IVF0026910.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0026910.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposase
Location	chr04: 22347907 .. 22348302 (-)
Sequence length	396
RNA-Seq Expression	IVF0026910.1
Synteny	IVF0026910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTTCTGAAACAGTTTCAATACAAGGCCATGTTTTCTGAGGATGATTTTGTGGAACGAAGCACGTTCCATAAAATACAAAGTAGAGAGGAAACGAATAAAAGATTTAAGAAAGAAGAATGCTCACGGCAAGCTGAGCAACCCAATAAGGAAGTTCCTGAATCCTTCCTCAAATTTCAAGAATTAATGATGGCCAAAAATCAAGCATTGAACATGAAATTGAACAAACTGATTTTAGAGGTTGAAGGTTTGAAAAATATGTTGAAAGAGAAGGAAAGGACAACAGTGGAACCAAATGAAACCATACAGAGGGATGAGAATGATGAGAATGATGGAGATGAAGTTGATAGAAATAATGGTGAAGAAAGGGGAAGGAGGGATAAAGGAGAATAG

mRNA sequence

ATGTCATTTCTGAAACAGTTTCAATACAAGGCCATGTTTTCTGAGGATGATTTTGTGGAACGAAGCACGTTCCATAAAATACAAAGTAGAGAGGAAACGAATAAAAGATTTAAGAAAGAAGAATGCTCACGGCAAGCTGAGCAACCCAATAAGGAAGTTCCTGAATCCTTCCTCAAATTTCAAGAATTAATGATGGCCAAAAATCAAGCATTGAACATGAAATTGAACAAACTGATTTTAGAGGTTGAAGGTTTGAAAAATATGTTGAAAGAGAAGGAAAGGACAACAGTGGAACCAAATGAAACCATACAGAGGGATGAGAATGATGAGAATGATGGAGATGAAGTTGATAGAAATAATGGTGAAGAAAGGGGAAGGAGGGATAAAGGAGAATAG

Coding sequence (CDS)

ATGTCATTTCTGAAACAGTTTCAATACAAGGCCATGTTTTCTGAGGATGATTTTGTGGAACGAAGCACGTTCCATAAAATACAAAGTAGAGAGGAAACGAATAAAAGATTTAAGAAAGAAGAATGCTCACGGCAAGCTGAGCAACCCAATAAGGAAGTTCCTGAATCCTTCCTCAAATTTCAAGAATTAATGATGGCCAAAAATCAAGCATTGAACATGAAATTGAACAAACTGATTTTAGAGGTTGAAGGTTTGAAAAATATGTTGAAAGAGAAGGAAAGGACAACAGTGGAACCAAATGAAACCATACAGAGGGATGAGAATGATGAGAATGATGGAGATGAAGTTGATAGAAATAATGGTGAAGAAAGGGGAAGGAGGGATAAAGGAGAATAG

Protein sequence

MSFLKQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELMMAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEERGRRDKGE

Homology

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BLAST of IVF0026910.1 vs. ExPASy TrEMBL
Match: A0A5A7TWM9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.0e-34
Identity = 86/120 (71.67%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 5   KQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELM 64
           +QFQYKAMF +D+FVERS FH+ QS +ET+KRFKK ECSRQA+  N EVP+ FLKFQEL+
Sbjct: 301 EQFQYKAMFPDDNFVERSMFHERQSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELI 360

Query: 65  MAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEER 124
           MA NQALN+KL+KL+L++EGLKN+LKEKE  TVEPNE IQR   DENDGD+ DRNNGEE+
Sbjct: 361 MANNQALNVKLDKLLLKIEGLKNLLKEKESATVEPNENIQR---DENDGDQGDRNNGEEK 417

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BLAST of IVF0026910.1 vs. ExPASy TrEMBL
Match: A0A5D3DQK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00170 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.0e-33
Identity = 83/112 (74.11%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 4   LKQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQEL 63
           +K+FQYKAMF +DDFVERSTFH+ + REETN+RF++ ECSRQ E+ N+EVP+ FLKFQE+
Sbjct: 91  IKKFQYKAMFPDDDFVERSTFHETKMREETNERFERGECSRQPEKSNEEVPKYFLKFQEV 150

Query: 64  MMAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDE 116
           MMA NQ+LN+KL+KLILEVEGLKNMLKEKER TVE NETI+RDEN  NDG E
Sbjct: 151 MMANNQSLNIKLDKLILEVEGLKNMLKEKERKTVENNETIERDEN--NDGGE 200

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BLAST of IVF0026910.1 vs. ExPASy TrEMBL
Match: A0A5D3DV63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00030 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 19  VERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELMMAKNQALNMKLNKL 78
           +  STFH+ +SREETN+RFKK ECS+QAE  NKEV E FLKF EL+M  NQALNMKL+KL
Sbjct: 104 IMNSTFHETKSREETNERFKKGECSQQAELSNKEVAEYFLKFPELIMINNQALNMKLDKL 163

Query: 79  ILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEERGRRDKGE 132
           ILEVEGLK+MLKEKER TVE NETIQRDEN+ENDG E  RNNGEE G RDKGE
Sbjct: 164 ILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGE 216

[Close]

BLAST of IVF0026910.1 vs. ExPASy TrEMBL
Match: A0A5A7UQS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001240 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 19  VERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELMMAKNQALNMKLNKL 78
           +  STFH+ +SREETN+RFKK ECS+QAE  NKEV E FLKF EL+M  NQALNMKL+KL
Sbjct: 142 IMNSTFHETKSREETNERFKKGECSQQAELSNKEVAEYFLKFPELIMINNQALNMKLDKL 201

Query: 79  ILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEERGRRDKGE 132
           ILEVEGLK+MLKEKER TVE NETIQRDEN+ENDG E  RNNGEE G RDKGE
Sbjct: 202 ILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGE 254

[Close]

BLAST of IVF0026910.1 vs. ExPASy TrEMBL
Match: A0A5A7V8N4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003890 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.8e-25
Identity = 68/119 (57.14%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 5   KQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELM 64
           +QF++K MF E+DF+E+STFH+ +  +ET KR +K ECSRQAE  + EVP+ F +FQEL+
Sbjct: 24  EQFEFKVMFLEEDFIEQSTFHERKPTKETRKRLEKGECSRQAEHTDVEVPKYFFRFQELI 83

Query: 65  MAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEE 124
           MA N+ALN+K++K+++EVEGLK +LKEK   TVE  E  +RD+ND NDG    RNNGEE
Sbjct: 84  MASNEALNLKMDKMLVEVEGLKKLLKEKNSQTVEETENKERDDNDGNDGGNNLRNNGEE 142

[Close]

BLAST of IVF0026910.1 vs. NCBI nr
Match: TYK25812.1 (uncharacterized protein E5676_scaffold436G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 1.39e-42
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 4   LKQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQEL 63
           +K+FQYKAMF +DDFVERSTFH+ + REETN+RF++ ECSRQ E+ N+EVP+ FLKFQE+
Sbjct: 91  IKKFQYKAMFPDDDFVERSTFHETKMREETNERFERGECSRQPEKSNEEVPKYFLKFQEV 150

Query: 64  MMAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDG 113
           MMA NQ+LN+KL+KLILEVEGLKNMLKEKER TVE NETI+RDEN  NDG
Sbjct: 151 MMANNQSLNIKLDKLILEVEGLKNMLKEKERKTVENNETIERDEN--NDG 198

[Close]

BLAST of IVF0026910.1 vs. NCBI nr
Match: KAA0047364.1 (transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 5.15e-41
Identity = 86/120 (71.67%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 5   KQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELM 64
           +QFQYKAMF +D+FVERS FH+ QS +ET+KRFKK ECSRQA+  N EVP+ FLKFQEL+
Sbjct: 301 EQFQYKAMFPDDNFVERSMFHERQSTKETHKRFKKGECSRQAKHTNVEVPKYFLKFQELI 360

Query: 65  MAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEER 124
           MA NQALN+KL+KL+L++EGLKN+LKEKE  TVEPNE IQRDEND   GD+ DRNNGEE+
Sbjct: 361 MANNQALNVKLDKLLLKIEGLKNLLKEKESATVEPNENIQRDEND---GDQGDRNNGEEK 417

[Close]

BLAST of IVF0026910.1 vs. NCBI nr
Match: TYK27677.1 (uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 2.99e-39
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 22  STFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELMMAKNQALNMKLNKLILE 81
           STFH+ +SREETN+RFKK ECS+QAE  NKEV E FLKF EL+M  NQALNMKL+KLILE
Sbjct: 107 STFHETKSREETNERFKKGECSQQAELSNKEVAEYFLKFPELIMINNQALNMKLDKLILE 166

Query: 82  VEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEERGRRDKGE 131
           VEGLK+MLKEKER TVE NETIQRDEN+ENDG E  RNNGEE G RDKGE
Sbjct: 167 VEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGE 216

[Close]

BLAST of IVF0026910.1 vs. NCBI nr
Match: KAA0055985.1 (uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 7.65e-39
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 22  STFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELMMAKNQALNMKLNKLILE 81
           STFH+ +SREETN+RFKK ECS+QAE  NKEV E FLKF EL+M  NQALNMKL+KLILE
Sbjct: 145 STFHETKSREETNERFKKGECSQQAELSNKEVAEYFLKFPELIMINNQALNMKLDKLILE 204

Query: 82  VEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEERGRRDKGE 131
           VEGLK+MLKEKER TVE NETIQRDEN+ENDG E  RNNGEE G RDKGE
Sbjct: 205 VEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGE 254

[Close]

BLAST of IVF0026910.1 vs. NCBI nr
Match: KAA0062049.1 (uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 4.41e-32
Identity = 68/119 (57.14%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 5   KQFQYKAMFSEDDFVERSTFHKIQSREETNKRFKKEECSRQAEQPNKEVPESFLKFQELM 64
           +QF++K MF E+DF+E+STFH+ +  +ET KR +K ECSRQAE  + EVP+ F +FQEL+
Sbjct: 24  EQFEFKVMFLEEDFIEQSTFHERKPTKETRKRLEKGECSRQAEHTDVEVPKYFFRFQELI 83

Query: 65  MAKNQALNMKLNKLILEVEGLKNMLKEKERTTVEPNETIQRDENDENDGDEVDRNNGEE 123
           MA N+ALN+K++K+++EVEGLK +LKEK   TVE  E  +RD+ND NDG    RNNGEE
Sbjct: 84  MASNEALNLKMDKMLVEVEGLKKLLKEKNSQTVEETENKERDDNDGNDGGNNLRNNGEE 142

The following BLAST results are available for this feature:

BLAST of IVF0026910.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWM9	7.0e-34	71.67	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE...	[more]
A0A5D3DQK4	6.0e-33	74.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DV63	1.9e-31	76.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQS8	1.9e-31	76.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V8N4	7.8e-25	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0026910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25812.1	1.39e-42	74.55	uncharacterized protein E5676_scaffold436G00170 [Cucumis melo var. makuwa]	[more]
KAA0047364.1	5.15e-41	71.67	transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var...	[more]
TYK27677.1	2.99e-39	78.18	uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa]	[more]
KAA0055985.1	7.65e-39	78.18	uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa]	[more]
KAA0062049.1	4.41e-32	57.14	uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026910.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..106

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0026910	IVF0026910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026910.1-exon	IVF0026910.1-exon-chr04:22347907..22348302	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026910.1-cds	IVF0026910.1-cds-chr04:22347907..22348302	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0026910.1	IVF0026910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0046983	protein dimerization activity