IVF0026679.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0026679.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Lon protease 2-like
Location	chr05: 21654148 .. 21654342 (+)
Sequence length	195
RNA-Seq Expression	IVF0026679.1
Synteny	IVF0026679.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGTGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGAAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCATGA

mRNA sequence

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGTGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGAAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCATGA

Coding sequence (CDS)

ATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAAAGAAGGCGTCGTTGGAGGCGGAAGAAGGTGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGAAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCATGA

Protein sequence

MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEEKFAP

Homology

[Close]

BLAST of IVF0026679.1 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.0e-25
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
           MTTGWR+KKASLEAKEG+VGGGRR RAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 158

Query: 61  KFAP 65
           KFAP
Sbjct: 159 KFAP 162

[Close]

BLAST of IVF0026679.1 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-17
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 5  WRRKKASLEAKEGVVGGGRRCRAEEGVL--ENGKAEEGRKSWRIYWRGRKSRRRMEEEKF 64
          WRRKK  LEA+EGVVGGGRR RA+EGVL  ENGK EEGRKSWRIYWRGRKSRR MEEEKF
Sbjct: 27 WRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKF 86

[Close]

BLAST of IVF0026679.1 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 56/90 (62.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 4  GWRRKKA----------------SLEAKEGVVGG-------------GRRCRAEEGVLEN 63
          GWRRKK                  LEA+EGVVGG             GRR RAEEGVLEN
Sbjct: 8  GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67

Query: 64 GKAEEGRKSWRIYWRGRKSRRRMEEEKFAP 65
          GKAEE RKSWRIYWRGRKSRRRMEEEKFAP
Sbjct: 68 GKAEEVRKSWRIYWRGRKSRRRMEEEKFAP 97

[Close]

BLAST of IVF0026679.1 vs. ExPASy TrEMBL
Match: A0A5A7TVG1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00760 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.2e-12
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
          MTTGWR+KK  LEA+EGV+            +ENGK E+GRKSWRIYWRGRKSRR MEEE
Sbjct: 1  MTTGWRQKKLWLEAEEGVLN-----------VENGKDEKGRKSWRIYWRGRKSRRGMEEE 53

Query: 61 KFAP 65
          KF P
Sbjct: 61 KFTP 53

[Close]

BLAST of IVF0026679.1 vs. ExPASy TrEMBL
Match: A0A5A7TUB6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00040 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVL 33
          MTTGWRRKKASLEA EGVVGGG R RAEEGV+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVV 53

[Close]

BLAST of IVF0026679.1 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 7.76e-34
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
           MTTGWR+KKASLEAKEG+VGGGRR RAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 158

Query: 61  KFAP 64
           KFAP
Sbjct: 159 KFAP 162

[Close]

BLAST of IVF0026679.1 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.34e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 5  WRRKKASLEAKEGVVGGGRRCRAEEGVL--ENGKAEEGRKSWRIYWRGRKSRRRMEEEKF 63
          WRRKK  LEA+EGVVGGGRR RA+EGVL  ENGK EEGRKSWRIYWRGRKSRR MEEEKF
Sbjct: 27 WRRKKTFLEAEEGVVGGGRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKF 86

[Close]

BLAST of IVF0026679.1 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.93e-19
Identity = 56/90 (62.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 4  GWRRKKASLE----------------AKEGVVGG-------------GRRCRAEEGVLEN 63
          GWRRKK  LE                A+EGVVGG             GRR RAEEGVLEN
Sbjct: 8  GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67

[Close]

BLAST of IVF0026679.1 vs. NCBI nr
Match: KAA0046136.1 (hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.70e-15
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEE 60
          MTTGWR+KK  LEA+EGV+            +ENGK E+GRKSWRIYWRGRKSRR MEEE
Sbjct: 1  MTTGWRQKKLWLEAEEGVLN-----------VENGKDEKGRKSWRIYWRGRKSRRGMEEE 53

Query: 61 KFAP 64
          KF P
Sbjct: 61 KFTP 53

[Close]

BLAST of IVF0026679.1 vs. NCBI nr
Match: KAA0047052.1 (hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 9.31e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1  MTTGWRRKKASLEAKEGVVGGGRRCRAEEGVL 32
          MTTGWRRKKASLEA EGVVGGG R RAEEGV+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVV 53

The following BLAST results are available for this feature:

BLAST of IVF0026679.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026679.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHI4	5.0e-25	95.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CTI7	3.8e-17	85.25	Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G...	[more]
A0A5D3CCS9	6.1e-15	62.22	50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TVG1	8.2e-12	65.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TUB6	5.7e-05	87.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0026679.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025306.1	7.76e-34	95.31	hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]	[more]
KAA0063229.1	3.34e-22	85.25	lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [...	[more]
KAA0034559.1	1.93e-19	62.22	50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p...	[more]
KAA0046136.1	1.70e-15	65.63	hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa]	[more]
KAA0047052.1	9.31e-08	87.50	hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026679.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0026679	IVF0026679	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026679.1-exon	IVF0026679.1-exon-chr05:21654148..21654342	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0026679.1-cds	IVF0026679.1-cds-chr05:21654148..21654342	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0026679.1	IVF0026679.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008233	peptidase activity