IVF0024641.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0024641.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 23996511 .. 23996837 (+)
Sequence length294
RNA-Seq ExpressionIVF0024641.1
SyntenyIVF0024641.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGATGGTTATACATGTTCCCGATGCCATTAGCGATTCGTCGGGAATGTTTCAAACTATTCCTGACAAATCACTAATGGTGTTGAGAACAAGTAGGACCGCCCGACATCTTCGTGGTGCATCGGGAGTTCTCCTATATATTTCGTTTCAGTTTTGTGAAAGACAAAACTAAAATACGAAGAGAAGGAGAGGAGAAGAAGAAGAAAGGGAGAAATGCTTCGTCGTGATCATCGTGCCTTGCCCTAGCTACCGCGCCTCCATTGTTCCATTTCTGGTAAGTTTCAAACCATTTCTTGTTAGTTTTGAAGTTAGTTTAGATTAG

mRNA sequence

ATGGCATCGATGGTTATACATGTTCCCGATGCCATTAGCGATTCGTCGGGAATGTTTCAAACTATTCCTGACAAATCACTAATGGTGTTGAGAACAAGTAGGACCGCCCGACATCTTCGTGGTGCATCGGGAGTTCTCCTATATATTTCGTTTCAAAGGAGAGGAGAAGAAGAAGAAAGGGAGAAATGCTTCGTCGTGATCATCGTGCCTTGCCCTAGCTACCGCGCCTCCATTGTTCCATTTCTGGTAAGTTTCAAACCATTTCTTGTTAGTTTTGAAGTTAGTTTAGATTAG

Coding sequence (CDS)

ATGGCATCGATGGTTATACATGTTCCCGATGCCATTAGCGATTCGTCGGGAATGTTTCAAACTATTCCTGACAAATCACTAATGGTGTTGAGAACAAGTAGGACCGCCCGACATCTTCGTGGTGCATCGGGAGTTCTCCTATATATTTCGTTTCAAAGGAGAGGAGAAGAAGAAGAAAGGGAGAAATGCTTCGTCGTGATCATCGTGCCTTGCCCTAGCTACCGCGCCTCCATTGTTCCATTTCTGGTAAGTTTCAAACCATTTCTTGTTAGTTTTGAAGTTAGTTTAGATTAG

Protein sequence

MASMVIHVPDAISDSSGMFQTIPDKSLMVLRTSRTARHLRGASGVLLYISFQRRGEEEEREKCFVVIIVPCPSYRASIVPFLVSFKPFLVSFEVSLD
Homology
[Close]
BLAST of IVF0024641.1 vs. NCBI nr
Match: KAA0040362.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 8.24e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 2  ASMVIHVPDAISDSSGMFQTIPDKSLMVLRTSRTARHLRGASGVLLYI 49
          + M++ + DAISDSSGM   + D+SLM   T +++R+ RG SGV LYI
Sbjct: 51 SEMILTISDAISDSSGMLLAVSDESLMTSETWKSSRNFRGVSGVPLYI 98

The following BLAST results are available for this feature:
BLAST of IVF0024641.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024641.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024641.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040362.18.24e-0550.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0024641.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0024641IVF0024641gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0024641.1-exonIVF0024641.1-exon-chr01:23996511..23996665exon
IVF0024641.1-exonIVF0024641.1-exon-chr01:23996699..23996837exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0024641.1-cdsIVF0024641.1-cds-chr01:23996511..23996665CDS
IVF0024641.1-cdsIVF0024641.1-cds-chr01:23996699..23996837CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0024641.1IVF0024641.1-proteinpolypeptide