IVF0024378.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0024378.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L44
Location	chr04: 22603520 .. 22604466 (-)
Sequence length	947
RNA-Seq Expression	IVF0024378.1
Synteny	IVF0024378.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTTCTCATTTTCCTCTGCTTCATTTTCCCTCTCCCATGGCCGATTCTTCTCAAAAAAACCCTCCCTCCAAATCCCCATTCCGTTTCCTCTTCACTTGCTTCCGATCTTCCTCCAAACTTCCTGCAAAAAAGCCTTCTTCTATCGCCCCACGCAACCGCCGGACTTTCTCACTTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCTATCCATCTCACGATGAGCTCTCTTTTTCGCCGGACTTCAAGAAACCGCCTCCTCTTTCGTTGATTACGCCGAAAGCGCCACAGGTCGTAGGTGAGATCGTTGTGGATTCGGGTTATGAGTCACTTAAGCCAAGTCAAACTCGGAAGAAGCCCGAGTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAATCGCTGCGTCGTTGCACTCTGTATCTCCTCCCTCTCAGCTATTGACCCGCCAGAAAGATTTCAAAAGATCAGTCTCTGAACATCTCCCCGCCGCCGTCGCAACCACCTCCCCGGCGTTCTCAGACGGTAATAAACCCACCCCGAAGTTGGCGACGAATTATCCGGTCAAGAATTTGGATCGGGTGATTATGGTTGTTATGGTGGCTATTATGGTGCTATGGGGACGACTATGCGCCATACTGTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATGGAAGTGGGCGGCGGCGGCGGCAGAGGTGGGTTTGGCGGGAATTCTTGAGAAGGTTAGGGGAAAATACGTTGGTGAATTGGATATGGATAGGGTTAGGGAAAACCGCCATGCGAGAGAAAGGTTGGAGAAGAGGTTTTTGTTTTGATGAGGGAAGTAATAATTTGACTAATTCCTATCATACATTTACATATATGTAAACCAAAATTTGCACTCTTTAATTAAGTGCCC

mRNA sequence

GCCCTTCTCATTTTCCTCTGCTTCATTTTCCCTCTCCCATGGCCGATTCTTCTCAAAAAAACCCTCCCTCCAAATCCCCATTCCGTTTCCTCTTCACTTGCTTCCGATCTTCCTCCAAACTTCCTGCAAAAAAGCCTTCTTCTATCGCCCCACGCAACCGCCGGACTTTCTCACTTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCTATCCATCTCACGATGAGCTCTCTTTTTCGCCGGACTTCAAGAAACCGCCTCCTCTTTCGTTGATTACGCCGAAAGCGCCACAGGTCGTAGGTGAGATCGTTGTGGATTCGGGTTATGAGTCACTTAAGCCAAGTCAAACTCGGAAGAAGCCCGAGTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAATCGCTGCGTCGTTGCACTCTGTATCTCCTCCCTCTCAGCTATTGACCCGCCAGAAAGATTTCAAAAGATCAGTCTCTGAACATCTCCCCGCCGCCGTCGCAACCACCTCCCCGGCGTTCTCAGACGGTAATAAACCCACCCCGAAGTTGGCGACGAATTATCCGGTCAAGAATTTGGATCGGGTGATTATGGTTGTTATGGTGGCTATTATGGTGCTATGGGGACGACTATGCGCCATACTGTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATGGAAGTGGGCGGCGGCGGCGGCAGAGGTGGGTTTGGCGGGAATTCTTGAGAAGGTTAGGGGAAAATACGTTGGTGAATTGGATATGGATAGGGTTAGGGAAAACCGCCATGCGAGAGAAAGGTTGGAGAAGAGGTTTTTGTTTTGATGAGGGAAGTAATAATTTGACTAATTCCTATCATACATTTACATATATGTAAACCAAAATTTGCACTCTTTAATTAAGTGCCC

Coding sequence (CDS)

ATGGCCGATTCTTCTCAAAAAAACCCTCCCTCCAAATCCCCATTCCGTTTCCTCTTCACTTGCTTCCGATCTTCCTCCAAACTTCCTGCAAAAAAGCCTTCTTCTATCGCCCCACGCAACCGCCGGACTTTCTCACTTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCTATCCATCTCACGATGAGCTCTCTTTTTCGCCGGACTTCAAGAAACCGCCTCCTCTTTCGTTGATTACGCCGAAAGCGCCACAGGTCGTAGGTGAGATCGTTGTGGATTCGGGTTATGAGTCACTTAAGCCAAGTCAAACTCGGAAGAAGCCCGAGTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAATCGCTGCGTCGTTGCACTCTGTATCTCCTCCCTCTCAGCTATTGACCCGCCAGAAAGATTTCAAAAGATCAGTCTCTGAACATCTCCCCGCCGCCGTCGCAACCACCTCCCCGGCGTTCTCAGACGGTAATAAACCCACCCCGAAGTTGGCGACGAATTATCCGGTCAAGAATTTGGATCGGGTGATTATGGTTGTTATGGTGGCTATTATGGTGCTATGGGGACGACTATGCGCCATACTGTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATGGAAGTGGGCGGCGGCGGCGGCAGAGGTGGGTTTGGCGGGAATTCTTGA

Protein sequence

MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVDVAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGGNS

Homology

[Close]

BLAST of IVF0024378.1 vs. ExPASy TrEMBL
Match: A0A5A7UA28 (60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00090 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.5e-127
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
           VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG 240
           ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG
Sbjct: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG 240

Query: 241 NS 243
           NS
Sbjct: 241 NS 242

[Close]

BLAST of IVF0024378.1 vs. ExPASy TrEMBL
Match: A0A0A0LCZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.5e-95
Identity = 200/243 (82.30%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MADSS+  PPSKSP  FLF+CFRSSSKLP KK SSIAPR RRT S TFRFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
           VA PSHDELSF P+FKK PPLS I PKAPQV GEIVVDS   SLKPSQTRKKP STQSNF
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSNF 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           TTKKLSPTRK AA LHSVS PSQ LTRQK FK+ VS HLPAAVATTSPAFSDGNKPTPKL
Sbjct: 121 TTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKL 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEV-GGGGGRGGFG 240
            T YPVKN DRVIMVV+VAI++LWGRLCAILCTTALFYLGRRMRSE+E  GGG GRG   
Sbjct: 181 PTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLS 240

Query: 241 GNS 243
           GNS
Sbjct: 241 GNS 240

[Close]

BLAST of IVF0024378.1 vs. ExPASy TrEMBL
Match: A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 7.6e-50
Identity = 129/238 (54.20%), Postives = 160/238 (67.23%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA++S+K  PSK P  FL  CF SS K+  KK  +   R+ R  S  FRFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAYPS-----HDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPES 120
           VA P       D+ SFSP+FKKPPP  LI  +AP V  +IV     E +KPSQ  KK ES
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIV-----ELIKPSQPWKKTES 120

Query: 121 TQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNK 180
           T+S+F    L+P ++ AA LHS+S PS+ L RQKDFK++VS HL +AV T +P  S+  K
Sbjct: 121 TRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRK 180

Query: 181 PTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGG 234
           P  K   N P K LD +I++V VAI+VLWG+LCAILCTTALFY  RR+RSE E+ GGG
Sbjct: 181 PADKPPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG 227

[Close]

BLAST of IVF0024378.1 vs. ExPASy TrEMBL
Match: A0A6J1IZW6 (uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 124/240 (51.67%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA+SS      K    FLF CFRSS  +  +K   IA  NRRT SL FRFKK SATVP+D
Sbjct: 1   MAESS-----DKPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
            A P HDELSFSP+F  PPP S        + GEI+VDSG +++K S+TRKK ESTQSN 
Sbjct: 61  AAVPCHDELSFSPEFNTPPPPS-------PIKGEIIVDSGCKTIKQSKTRKKSESTQSNP 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           T +KL P +K + SLHS          +K  K+S+S HLP AVA   P  S  +  + K 
Sbjct: 121 TVEKLPPAKKTSPSLHS----------EKGLKKSIS-HLPIAVADADPTTSLASSDSWKA 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEME----VGGGGGRG 237
            TN P    D V ++V VAI+VLWGRLCAILCT ALFYL R +RS+ E    V GGG  G
Sbjct: 181 PTNSPTIKFDLVTVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFG 217

[Close]

BLAST of IVF0024378.1 vs. ExPASy TrEMBL
Match: A0A6J1F3C2 (uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC111441760 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 126/246 (51.22%), Postives = 149/246 (60.57%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA+SS      K    FLF CFRSS  +  +K   IA  NRRT SL FRFKKSSATVP+D
Sbjct: 1   MAESS-----DKPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSN- 120
            A P HDELS SP+F  PPP        P + GEI+VDSG +++KPS+TRKK ESTQSN 
Sbjct: 61  AAVPCHDELSLSPEFNTPPP-------PPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNP 120

Query: 121 ---FTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVA--TTSPAFSDGN 180
               T    +  +K + SLHS          +K  K+S+S HLP A A  TTS   SD  
Sbjct: 121 KSESTQSNSTAEKKTSPSLHS----------EKGLKKSIS-HLPTAAAALTTSLPSSDRW 180

Query: 181 KPTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEME----VG 237
           KP     TN P K  D VI++V VAI+VLWGRLCAILCT ALFYL R +RS+ E    + 
Sbjct: 181 KP----PTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVIH 219

[Close]

BLAST of IVF0024378.1 vs. NCBI nr
Match: KAA0052773.1 (60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal protein L44 [Cucumis melo var. makuwa])

HSP 1 Score: 459 bits (1182), Expect = 1.08e-162
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
           VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG 240
           ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG
Sbjct: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGGGRGGFGG 240

Query: 241 NS 242
           NS
Sbjct: 241 NS 242

[Close]

BLAST of IVF0024378.1 vs. NCBI nr
Match: KGN58547.1 (hypothetical protein Csa_002056 [Cucumis sativus])

HSP 1 Score: 353 bits (906), Expect = 1.12e-120
Identity = 200/243 (82.30%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MADSS+  PPSKSP  FLF+CFRSSSKLP KK SSIAPR RRT S TFRFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
           VA PSHDELSF P+FKK PPLS I PKAPQV GEIVVDS   SLKPSQTRKKP STQSNF
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSNF 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           TTKKLSPTRK AA LHSVS PSQ LTRQK FK+ VS HLPAAVATTSPAFSDGNKPTPKL
Sbjct: 121 TTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKL 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEV-GGGGGRGGFG 240
            T YPVKN DRVIMVV+VAI++LWGRLCAILCTTALFYLGRRMRSE+E  GGG GRG   
Sbjct: 181 PTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLS 240

Query: 241 GNS 242
           GNS
Sbjct: 241 GNS 240

[Close]

BLAST of IVF0024378.1 vs. NCBI nr
Match: XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])

HSP 1 Score: 203 bits (517), Expect = 2.04e-61
Identity = 129/238 (54.20%), Postives = 160/238 (67.23%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA++S+K  PSK P  FL  CF SS K+  KK  +   R+ R  S  FRFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAYPS-----HDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPES 120
           VA P       D+ SFSP+FKKPPP  LI  +AP V  +IV     E +KPSQ  KK ES
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIV-----ELIKPSQPWKKTES 120

Query: 121 TQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNK 180
           T+S+F    L+P ++ AA LHS+S PS+ L RQKDFK++VS HL +AV T +P  S+  K
Sbjct: 121 TRSDF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRK 180

Query: 181 PTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGG 233
           P  K   N P K LD +I++V VAI+VLWG+LCAILCTTALFY  RR+RSE E+ GGG
Sbjct: 181 PADKPPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGG 227

[Close]

BLAST of IVF0024378.1 vs. NCBI nr
Match: KAG6606901.1 (60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (494), Expect = 1.21e-56
Identity = 126/238 (52.94%), Postives = 156/238 (65.55%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA++S+K  PSK P  FL  CF SS K+  KK  +    + R  S  FRFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60

Query: 61  VAYPS-----HDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPES 120
           VA P       D+ SFSP+FKKPPP  LI  +AP V  +IV     E +KPSQT KK ES
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIV-----ELIKPSQTWKKTES 120

Query: 121 TQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNK 180
           T+ +     L+P ++ AA LHS+S PS+ L RQKD K++VS HL +AV T +P  S+  K
Sbjct: 121 TRYDS----LTPAKRTAALLHSISLPSRRLNRQKDLKKTVS-HL-SAVKTPTPTSSERRK 180

Query: 181 PTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEVGGGG 233
           P  K   N P K LD +I++V VAI+VLWG+LCAILCTTALFY  RR+RSE E  GGG
Sbjct: 181 PADKAPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEGGG 227

[Close]

BLAST of IVF0024378.1 vs. NCBI nr
Match: XP_022982640.1 (uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharacterized protein LOC111481455 [Cucurbita maxima])

HSP 1 Score: 188 bits (478), Expect = 5.89e-56
Identity = 120/229 (52.40%), Postives = 144/229 (62.88%), Query Frame = 0


Query: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
           MA+SS K         FLF CFRSS  +  +K   IA  NRRT SL FRFKK SATVP+D
Sbjct: 1   MAESSDKPR-----LHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60

Query: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
            A P HDELSFSP+F  PPP S I        GEI+VDSG +++K S+TRKK ESTQSN 
Sbjct: 61  AAVPCHDELSFSPEFNTPPPPSPIK-------GEIIVDSGCKTIKQSKTRKKSESTQSNP 120

Query: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
           T +KL P +K + SLHS          +K  K+S+S HLP AVA   P  S  +  + K 
Sbjct: 121 TVEKLPPAKKTSPSLHS----------EKGLKKSIS-HLPIAVADADPTTSLASSDSWKA 180

Query: 181 ATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMRSEMEV 229
            TN P    D V ++V VAI+VLWGRLCAILCT ALFYL R +RS+ E+
Sbjct: 181 PTNSPTIKFDLVTVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAEL 206

The following BLAST results are available for this feature:

BLAST of IVF0024378.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024378.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UA28	4.5e-127	100.00	60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LCZ2	4.5e-95	82.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1	[more]
A0A6J1GBH7	7.6e-50	54.20	uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]
A0A6J1IZW6	5.6e-45	51.67	uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455...	[more]
A0A6J1F3C2	1.3e-41	51.22	uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]

BLAST of IVF0024378.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052773.1	1.08e-162	100.00	60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal p...	[more]
KGN58547.1	1.12e-120	82.30	hypothetical protein Csa_002056 [Cucumis sativus]	[more]
XP_022949237.1	2.04e-61	54.20	uncharacterized protein LOC111452650 [Cucurbita moschata]	[more]
KAG6606901.1	1.21e-56	52.94	60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022982640.1	5.89e-56	52.40	uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharac...	[more]

BLAST of IVF0024378.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	PANTHER	PTHR34379:SF3	PROTEIN, PUTATIVE-RELATED	coord: 1..233
IPR040411	Uncharacterized protein At5g23160-like	PANTHER	PTHR34379	OS07G0553800 PROTEIN	coord: 1..233

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0024378	IVF0024378	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024378.1-exon	IVF0024378.1-exon-chr04:22603520..22604466	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024378.1-three_prime_utr	IVF0024378.1-three_prime_utr-chr04:22603520..22603699	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024378.1-cds	IVF0024378.1-cds-chr04:22603700..22604428	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0024378.1-five_prime_utr	IVF0024378.1-five_prime_utr-chr04:22604429..22604466	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0024378.1	IVF0024378.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome