IVF0023144.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0023144.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr05: 13403110 .. 13403583 (-)
Sequence length	474
RNA-Seq Expression	IVF0023144.1
Synteny	IVF0023144.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

mRNA sequence

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGAAGATACATAATATATACGATTTACCTATTGTACCTCCACCAGTTCATAGGGAACGTTTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGTCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCAGTATAGGATATTATGATGCAGTGGTCGGTCCATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGTATGGACACGGACGTGGCTATGGGGAACATAATGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTCGAAATCGACAATGTTCGGGTTGTGGAACACATTGA

Protein sequence

MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH

Homology

[Close]

BLAST of IVF0023144.1 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 158
           QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH
Sbjct: 464 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of IVF0023144.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.1e-71
Identity = 136/157 (86.62%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+YDLPIVPPPVHR   RVEEAELD+VYHNVEEVP TTQTQSQTGYGSPMTMMPT
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           F AGYCD EV IGYYDA VGP SSY+DV PSTSYM+GH RGYGEHNEYLYHEAP DVSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 158
           QEYQQEP+NQEDREQHRVQSRRRQP RNR+C GCGTH
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of IVF0023144.1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.3e-70
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+YDLPIVPPPVHR   RVEEAELD+VYHNVEEVP TTQTQSQTGYGSPMTMMPT
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           F AGYCD EV IGYYDA VGP SSY+DV PSTSYM+GH RGYGEHNEYLYHEAP DVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 158
           QEYQQEP+NQEDREQHRVQSRRRQP RNR+  GCGTH
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of IVF0023144.1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.7e-69
Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 7   IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           +YDLPIVPP VHR R RVEE ELDEVYHNVEEVPPTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQE 126
           DSEVS GYYDA +GPLSSYMDVGPS SYM+GHGRGYGEHNEYLYHEAP DVSDRQEYQQE
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQE 120

Query: 127 PKNQEDREQHRVQSRRRQPARNRQCSGCGTH 158
           P+NQEDREQHRVQSRRRQP RNR+   CGTH
Sbjct: 121 PENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of IVF0023144.1 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.1e-57
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+Y LPIVPP +HR R +VEEAELDEVYHNVEE+ PTTQ Q+QTGYGSPM MMPT
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           FG GYCD EV+  YYD+ VGP SSYMDVGPSTSYM+GH   YGEHNEYLYHEAPT+VSDR
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182

Query: 121 QEYQQEPKNQEDREQHRVQSR 142
           QEYQQEP+NQE+ EQHRVQSR
Sbjct: 183 QEYQQEPENQEELEQHRVQSR 203

[Close]

BLAST of IVF0023144.1 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 321 bits (823), Expect = 6.92e-106
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 157
           QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH
Sbjct: 464 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of IVF0023144.1 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (706), Expect = 3.80e-92
Identity = 136/157 (86.62%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+YDLPIVPPPVHR   RVEEAELD+VYHNVEEVP TTQTQSQTGYGSPMTMMPT
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           F AGYCD EV IGYYDA VGP SSY+DV PSTSYM+GH RGYGEHNEYLYHEAP DVSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 157
           QEYQQEP+NQEDREQHRVQSRRRQP RNR+C GCGTH
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of IVF0023144.1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (690), Expect = 1.39e-90
Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 7   IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           +YDLPIVPP VHR R RVEE ELDEVYHNVEEVPPTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQE 126
           DSEVS GYYDA +GPLSSYMDVGPS SYM+GHGRGYGEHNEYLYHEAP DVSDRQEYQQE
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQE 120

Query: 127 PKNQEDREQHRVQSRRRQPARNRQCSGCGTH 157
           P+NQEDREQHRVQSRRRQP RNR+   CGTH
Sbjct: 121 PENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of IVF0023144.1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 1.90e-90
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+YDLPIVPPPVHR   RVEEAELD+VYHNVEEVP TTQTQSQTGYGSPMTMMPT
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           F AGYCD EV IGYYDA VGP SSY+DV PSTSYM+GH RGYGEHNEYLYHEAP DVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

Query: 121 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 157
           QEYQQEP+NQEDREQHRVQSRRRQP RNR+  GCGTH
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of IVF0023144.1 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 1.63e-73
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 60
           ME+IHN+Y LPIVPP +HR R +VEEAELDEVYHNVEE+ PTTQ Q+QTGYGSPM MMPT
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 61  FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 120
           FG GYCD EV+  YYD+ VGP SSYMDVGPSTSYM+GH   YGEHNEYLYHEAPT+VSDR
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182

Query: 121 QEYQQEPKNQEDREQHRVQSR 141
           QEYQQEP+NQE+ EQHRVQSR
Sbjct: 183 QEYQQEPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of IVF0023144.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023144.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJV7	1.4e-84	100.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BSG8	5.1e-71	86.62	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	7.3e-70	85.99	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CXX3	4.7e-69	88.08	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7SLF8	7.1e-57	79.43	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of IVF0023144.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23842.1	6.92e-106	100.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK01176.1	3.80e-92	86.62	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	1.39e-90	88.08	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	1.90e-90	85.99	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0025972.1	1.63e-73	79.43	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of IVF0023144.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0023144	IVF0023144	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023144.1-exon	IVF0023144.1-exon-chr05:13403110..13403583	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0023144.1-cds	IVF0023144.1-cds-chr05:13403110..13403583	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0023144.1	IVF0023144.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance