IVF0021669.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0021669.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Trafficking protein particle complex subunit
Location	chr05: 22476733 .. 22478918 (+)
Sequence length	1055
RNA-Seq Expression	IVF0021669.1
Synteny	IVF0021669.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTTTAGCGTAGAAATTGAGAAAGGAAAAACAAATCGGCTATCAAAGTCGTCGTAATTACATTTGATCCGCCACTAGCAACCAGTCTCGCTCCCCCGAAACTCTCCCCTTAAGATCGGCGTTCACTGAAACTGGATTTTGCGCTTTCCAATCTACGTTCTTCCCCACACTTAATCCCTATTCACACCATATTATACTCATTTCCTTCATAATTCTTCAAAATTTGGGTAGATCGAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCAACCAATTCAAACTACCTGGTCATGCAATTGGAAACACAAATTTCCGATAATTCCTACCTGGATGTAGAATTTTATGCTTTATTTCGTTTCTGGGAACCCCAAATCAAGATTTCAGTTTTTTCATCTCATGTTGCAAAGGTATATAATTCGGTATGTGGGTATTCTATATGGATTGAGTCTCTTATTGGGTTTGTTTTAAAATTTAGGATTATGGGTCTGCTGGACGGATGGATACGAATGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGTACGTTTTTCCTTCCTGTATTTTGTTTACTTTTTTGCTTCAAACACATGGTTTCTGCCTCAAAATCTGTGATTCCAAAGATAAGCAGTTAAGTGAATCCCAAAATGGGAAAGCACAGCTGAAGTTCTAGAACTTTATTGATCTTTGTTTAGTTTCTTATTGAGTTCGAGAATTTATGAGAATGGGGATTCAAACATACCTTTGGTTGAAATTATTGTGCCTTAATTGGTTGAGTTTTGCTTGATTGTAAAAATGATATTGATGCTCTAGTTGAAAAATGTAGCCTTTTTTTCTTTTTTTAATCATGCTATAGTCTCCATAGATATGAGAGTGGGGATTCAAATATAAATTTTGGTTATTGAAATTGATGTTTGTTCAGTTTCTTGTTTCAAGTTTAAGAATGTATGAGAGTGGTGATTCAAACATAAATTTTGGTTGAGATTATTATGTCTTGATTAGTTGAGTTGTACTCAGATAGGTAGAAATGGCATTAATCCTTTATTAGAAAAATGTACCTTTTTATAGCCATACTAATATACTATAGTCTCCTTCGCAAATATTTTTGTGCTGTCAAACTTTTGGAGGAAAAAACTAGCATGTGGTGCAACAGAAACCACAAAATTAGTTTTTTGAAATCTCGATTCTGTAACTGTTTGTGTTTAATCTTTTGTCATTACACTTTGCTGCTTGCATAGGGGGAGGAGAGTTAAAGATTGTTTTGATATGGATATGAATGGCTTTTGGTGTGGAGGATTAATAATTTCTTCATTATCAACCAACCTACATAAGAAATAGAAATGCTTGTTCCGTAGTATAATTTTATATTTCCTTGTTCAAATTTTCTTTTTATCTCTGCAAAGTCTCACGGCAGTAACTTCATAAAGAACCAGAATCATGGATGGAAATTGTCTGTTGCAGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAAGGAGGCTCATGATATTATTGTGCAAAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGAATCACGTGAGATTTGGTGGAAAAAGAATGTTTCTTTTCATTGTTCATCAGGAAGTCAGGGTTAATTTTATACCCATTTTTTGTCAATTGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTATTACATTTTACTTCGACCTATTTAGATGAATGAAAGCATCAACTTCAGGATGTTCATCGTTGAAATATAACTACAAAGAAATACAAGATAAACCACC

mRNA sequence

TCTATTTTAGCGTAGAAATTGAGAAAGGAAAAACAAATCGGCTATCAAAGTCGTCGTAATTACATTTGATCCGCCACTAGCAACCAGTCTCGCTCCCCCGAAACTCTCCCCTTAAGATCGGCGTTCACTGAAACTGGATTTTGCGCTTTCCAATCTACGTTCTTCCCCACACTTAATCCCTATTCACACCATATTATACTCATTTCCTTCATAATTCTTCAAAATTTGGGTAGATCGAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGGATGGATACGAATGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAAGGAGGCTCATGATATTATTGTGCAAAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGAATCACGTGAGATTTGGTGGAAAAAGAATGTTTCTTTTCATTGTTCATCAGGAAGTCAGGGTTAATTTTATACCCATTTTTTGTCAATTGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTATTACATTTTACTTCGACCTATTTAGATGAATGAAAGCATCAACTTCAGGATGTTCATCGTTGAAATATAACTACAAAGAAATACAAGATAAACCACC

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGGATGGATACGAATGATAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGAACGTGTTGCTTTGCTTGGCCGATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKERVALLGR

Homology

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BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGVELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G  SG+E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

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BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-31
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

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BLAST of IVF0021669.1 vs. ExPASy TrEMBL
Match: A0A5A7TWY1 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00730 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. ExPASy TrEMBL
Match: A0A1S3BVQ7 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103494018 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.3e-73
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINL+QAVQK+RVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]

BLAST of IVF0021669.1 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. NCBI nr
Match: XP_008453237.1 (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA0048113.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa] >TYJ96439.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (734), Expect = 1.01e-97
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQKERVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. NCBI nr
Match: XP_004144741.1 (trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1 trafficking protein particle complex subunit 4 [Benincasa hispida])

HSP 1 Score: 286 bits (731), Expect = 2.88e-97
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 280 bits (716), Expect = 5.60e-95
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL+QAVQK+RVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]

BLAST of IVF0021669.1 vs. NCBI nr
Match: XP_041018648.1 (trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 277 bits (709), Expect = 6.54e-94
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKAIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. NCBI nr
Match: XP_031132245.1 (trafficking protein particle complex subunit 4-like [Ipomoea triloba])

HSP 1 Score: 276 bits (707), Expect = 1.32e-93
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPI GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPIMGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEPLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 141
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLGQAVQKDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 266.9 bits (681), Expect = 9.0e-72
Identity = 127/141 (90.07%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HMESLL+YIYELYTD+VLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLAQAVQKERVALLGR 142
           ELFDINL QAVQ +RVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]

BLAST of IVF0021669.1 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of IVF0021669.1 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:

BLAST of IVF0021669.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54UU1	4.3e-34	52.00	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44...	[more]
Q2TBL9	2.0e-31	58.49	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ...	[more]
Q9ES56	2.0e-31	58.49	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q69BT7	2.0e-31	58.49	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q9Y296	4.4e-31	57.55	Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of IVF0021669.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWY1	6.8e-75	100.00	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVQ7	6.8e-75	100.00	Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0LJ20	1.5e-74	99.29	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A6J1DUU4	8.3e-73	95.74	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KK16	1.2e-71	95.04	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of IVF0021669.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453237.1	1.01e-97	100.00	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA004...	[more]
XP_004144741.1	2.88e-97	99.29	trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1...	[more]
XP_022156391.1	5.60e-95	95.74	trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563...	[more]
XP_041018648.1	6.54e-94	95.04	trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans reg...	[more]
XP_031132245.1	1.32e-93	94.33	trafficking protein particle complex subunit 4-like [Ipomoea triloba]	[more]

BLAST of IVF0021669.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02280.1	9.0e-72	90.07	SNARE-like superfamily protein	[more]
AT1G51160.1	6.8e-11	27.08	SNARE-like superfamily protein	[more]
AT1G51160.2	6.8e-11	27.08	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 4..134 e-value: 2.3E-69 score: 246.4
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 4..133 e-value: 1.6E-53 score: 180.5
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..141
None	No IPR available	GENE3D	3.30.450.70		coord: 2..133 e-value: 8.6E-49 score: 167.5
None	No IPR available	PANTHER	PTHR23249:SF17	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED	coord: 1..141
None	No IPR available	CDD	cd14856	TRAPPC4_synbindin	coord: 5..130 e-value: 1.20819E-84 score: 241.653
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0021669	IVF0021669	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0021669.1-five_prime_utr	IVF0021669.1-five_prime_utr-chr05:22476733..22476976	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0021669.1-exon	IVF0021669.1-exon-chr05:22476733..22477036	exon
IVF0021669.1-exon	IVF0021669.1-exon-chr05:22477250..22477418	exon
IVF0021669.1-exon	IVF0021669.1-exon-chr05:22478337..22478918	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0021669.1-cds	IVF0021669.1-cds-chr05:22476977..22477036	CDS
IVF0021669.1-cds	IVF0021669.1-cds-chr05:22477250..22477418	CDS
IVF0021669.1-cds	IVF0021669.1-cds-chr05:22478337..22478533	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0021669.1-three_prime_utr	IVF0021669.1-three_prime_utr-chr05:22478534..22478918	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0021669.1	IVF0021669.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0030008	TRAPP complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus