IVF0020967.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0020967.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	arabinogalactan peptide 13-like
Location	chr05: 159129 .. 159296 (+)
Sequence length	168
RNA-Seq Expression	IVF0020967.2
Synteny	IVF0020967.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAA

mRNA sequence

ATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAA

Coding sequence (CDS)

ATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAA

Protein sequence

MEAIKLKLFLVLLLLAFAATNAQPAAPAPAPASDAPLFYPTFLASLSALFFSFFL

Homology

[Close]

BLAST of IVF0020967.2 vs. ExPASy TrEMBL
Match: A0A6J1J5K6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 56
          MEAIKLKLFLV+LL+AFAAT AQPA    APAPAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of IVF0020967.2 vs. ExPASy TrEMBL
Match: A0A6J1FWG8 (arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 56
          MEAIKLKLFLV+LL+AFAAT AQPA    APAPAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of IVF0020967.2 vs. ExPASy TrEMBL
Match: A0A438JV44 (Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-05
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 56
          MEA+K+KLFL ++++  A +  QPA    APAPAPASDA +F PTF ASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

[Close]

BLAST of IVF0020967.2 vs. ExPASy TrEMBL
Match: F6GUN4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-05
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 56
          MEA+K+KLFL ++++  A +  QPA    APAPAPASDA +F PTF ASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

[Close]

BLAST of IVF0020967.2 vs. NCBI nr
Match: XP_022944304.1 (arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 5.55e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of IVF0020967.2 vs. NCBI nr
Match: XP_023513159.1 (arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 2.16e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP--APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKL LV+LL+AFAAT AQPAAP  APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLLLVMLLVAFAATTAQPAAPSEAPAPASDAPLFYPTFFASLSALVFAFFL 57

[Close]

BLAST of IVF0020967.2 vs. NCBI nr
Match: KAG6570311.1 (hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.06e-15
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
           MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLF PTF ASLSAL F+FFL
Sbjct: 83  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFNPTFFASLSALVFAFFL 141

[Close]

BLAST of IVF0020967.2 vs. NCBI nr
Match: XP_038902540.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 4.40e-15
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLVLLL+AFA T AQ A    APAPAPASDA LFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVLLLMAFAGTIAQSATPSEAPAPAPASDASLFYPTFFASLSALLFAFFL 59

[Close]

BLAST of IVF0020967.2 vs. NCBI nr
Match: KAG6605834.1 (Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.50e-09
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 1   MEAIKLKLFLVLLLL-AFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
           MEA+KLKLFLVLL+L AFA T AQ AAP    APAPASDAPL Y +F ASLS L F++FL
Sbjct: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107

[Close]

BLAST of IVF0020967.2 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFA-----ATNAQPAAPAPAPASDAPLFYPTFLASLSALFFSFF 55
          MEA+K+KL++V+L+   A      T A   APAP+P SDA  F PTF AS++ + F FF
Sbjct: 1  MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

[Close]

BLAST of IVF0020967.2 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 41.2 bits (95), Expect = 3.1e-04
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSF 54
          MEA+K++LF+ +L+ A A +  Q A    APAP+P SDA L  P F AS++ L F F
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

The following BLAST results are available for this feature:

BLAST of IVF0020967.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020967.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5K6	8.4e-13	83.05	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3...	[more]
A0A6J1FWG8	8.4e-13	83.05	arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE...	[more]
A0A438JV44	6.4e-05	57.63	Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1	[more]
F6GUN4	6.4e-05	57.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=...	[more]

BLAST of IVF0020967.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944304.1	5.55e-18	83.05	arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogala...	[more]
XP_023513159.1	2.16e-17	84.21	arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570311.1	1.06e-15	81.36	hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038902540.1	4.40e-15	79.66	arabinogalactan protein 13-like [Benincasa hispida]	[more]
KAG6605834.1	1.50e-09	70.00	Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of IVF0020967.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56540.1	1.4e-04	47.46	arabinogalactan protein 14	[more]
AT4G26320.1	3.1e-04	47.37	arabinogalactan protein 13	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0020967	IVF0020967	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020967.2-exon	IVF0020967.2-exon-chr05:159129..159296	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0020967.2-cds	IVF0020967.2-cds-chr05:159129..159296	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0020967.2	IVF0020967.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane