IVF0019240.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0019240.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Kinesin-like protein KIN12B
Location	chr04: 21297261 .. 21297455 (+)
Sequence length	195
RNA-Seq Expression	IVF0019240.1
Synteny	IVF0019240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCAAGAAACCCTATTTTGCTATGTACCCATGTTGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGAGCGGCAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTTGCCGACTAAGTTGA

mRNA sequence

ATGCACCCAAGAAACCCTATTTTGCTATGTACCCATGTTGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGAGCGGCAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTTGCCGACTAAGTTGA

Coding sequence (CDS)

ATGCACCCAAGAAACCCTATTTTGCTATGTACCCATGTTGCCGATCCACTGCCATCTTCTATTCCTAGCGCTAACGGCGCCGGAATCAAGAGCGGCAGACCCCTCGGAAACCTACGTCGTCTTCCAAAGAAAATGCTTCACCGTCCGATCCCAATTCCATGGTTCCCGATTCCAAACCCTTGCCGACTAAGTTGA

Protein sequence

MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNPCRLS

Homology

[Close]

BLAST of IVF0019240.1 vs. ExPASy TrEMBL
Match: A0A5D3D6M1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75377G00020 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60

Query: 61 CRLS 65
          CRLS
Sbjct: 61 CRLS 64

[Close]

BLAST of IVF0019240.1 vs. ExPASy TrEMBL
Match: A0A5A7TWJ0 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001820 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.5e-26
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILL THVADPLPSSIPSANGAGIK GRPLGNLRRLPKKMLHRP+PIPWFPIP P
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPVPIPWFPIPKP 60

Query: 61 CRL 64
           RL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0019240.1 vs. ExPASy TrEMBL
Match: A0A5A7TTI5 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001120 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILL THVADPLPSSIPSANGAGIK GRPLGNLRRLPKKMLHRPIPIP FPIPNP
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPIPIPRFPIPNP 60

Query: 61 CRL 64
           RL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0019240.1 vs. ExPASy TrEMBL
Match: A0A5D3C3G4 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00260 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIP 52
          +HPRNPILL TH+ADPLP SIP ANGAGIK GRPLGNL RLPKKMLHR IP
Sbjct: 4  IHPRNPILLNTHLADPLPFSIPCANGAGIKGGRPLGNLCRLPKKMLHRQIP 54

[Close]

BLAST of IVF0019240.1 vs. ExPASy TrEMBL
Match: A0A5A7UMK9 (Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00630 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRR-------LPKKMLHRPIP-- 55
          MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLR+       L +K+    +P  
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRQPAPSSNPLKRKLSMETVPEN 60

[Close]

BLAST of IVF0019240.1 vs. NCBI nr
Match: TYK19211.1 (hypothetical protein E5676_scaffold75377G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 4.08e-41
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60

Query: 61 CRLS 64
          CRLS
Sbjct: 61 CRLS 64

[Close]

BLAST of IVF0019240.1 vs. NCBI nr
Match: KAA0046426.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 3.67e-35
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILL THVADPLPSSIPSANGAGIK GRPLGNLRRLPKKMLHRP+PIPWFPIP P
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPVPIPWFPIPKP 60

Query: 61 CRL 63
           RL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0019240.1 vs. NCBI nr
Match: KAA0046374.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0046381.1 kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 4.30e-34
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIPIPWFPIPNP 60
          MHPRNPILL THVADPLPSSIPSANGAGIK GRPLGNLRRLPKKMLHRPIPIP FPIPNP
Sbjct: 1  MHPRNPILLYTHVADPLPSSIPSANGAGIKGGRPLGNLRRLPKKMLHRPIPIPRFPIPNP 60

Query: 61 CRL 63
           RL
Sbjct: 61 RRL 63

[Close]

BLAST of IVF0019240.1 vs. NCBI nr
Match: TYK05870.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 9.36e-21
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRRLPKKMLHRPIP 51
          +HPRNPILL TH+ADPLP SIP ANGAGIK GRPLGNL RLPKKMLHR IP
Sbjct: 4  IHPRNPILLNTHLADPLPFSIPCANGAGIKGGRPLGNLCRLPKKMLHRQIP 54

[Close]

BLAST of IVF0019240.1 vs. NCBI nr
Match: KAA0031762.1 (kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0054855.1 kinesin-like protein KIN12B [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.71e-19
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRR-------LPKKMLHRPIP-- 54
          MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLR+       L +K+    +P  
Sbjct: 1  MHPRNPILLCTHVADPLPSSIPSANGAGIKSGRPLGNLRQPAPSSNPLKRKLSMETVPEN 60

The following BLAST results are available for this feature:

BLAST of IVF0019240.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6M1	1.4e-30	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWJ0	4.5e-26	92.06	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TTI5	2.9e-25	93.65	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3C3G4	2.1e-15	84.31	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMK9	1.8e-14	70.31	Kinesin-like protein KIN12B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of IVF0019240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19211.1	4.08e-41	100.00	hypothetical protein E5676_scaffold75377G00020 [Cucumis melo var. makuwa]	[more]
KAA0046426.1	3.67e-35	92.06	kinesin-like protein KIN12B [Cucumis melo var. makuwa]	[more]
KAA0046374.1	4.30e-34	93.65	kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0046381.1 kinesin-lik...	[more]
TYK05870.1	9.36e-21	84.31	kinesin-like protein KIN12B [Cucumis melo var. makuwa]	[more]
KAA0031762.1	1.71e-19	70.31	kinesin-like protein KIN12B [Cucumis melo var. makuwa] >KAA0054855.1 kinesin-lik...	[more]

BLAST of IVF0019240.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0019240	IVF0019240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019240.1-exon	IVF0019240.1-exon-chr04:21297261..21297455	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0019240.1-cds	IVF0019240.1-cds-chr04:21297261..21297455	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0019240.1	IVF0019240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007018	microtubule-based movement
cellular_component	GO:0005871	kinesin complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0008574	plus-end-directed microtubule motor activity
molecular_function	GO:0030955	potassium ion binding
molecular_function	GO:0004743	pyruvate kinase activity