IVF0018868.2 (mRNA) Melon (IVF77) v1

Overview
NameIVF0018868.2
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposase
Locationchr11: 4888342 .. 4888542 (-)
Sequence length201
RNA-Seq ExpressionIVF0018868.2
SyntenyIVF0018868.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGGCGGCTCGCAGCTTGGGAGGACGAACTGGCTCGGGCAATGCGGATGACTCAGGTGGCTCGCATGCGTAGCTCGGATCTAAGGCTAGAAGCGACCCAACTGATCACTCCGTGGATCAGGCGGACGACTGAGGAAGAAGCGATTTGCACACTCACTGACTCGGATGACAACTCGGTTCAGTCTAACATTTGTTGA

mRNA sequence

ATGGGGTGGCGGCTCGCAGCTTGGGAGGACGAACTGGCTCGGGCAATGCGGATGACTCAGGTGGCTCGCATGCGTAGCTCGGATCTAAGGCTAGAAGCGACCCAACTGATCACTCCGTGGATCAGGCGGACGACTGAGGAAGAAGCGATTTGCACACTCACTGACTCGGATGACAACTCGGTTCAGTCTAACATTTGTTGA

Coding sequence (CDS)

ATGGGGTGGCGGCTCGCAGCTTGGGAGGACGAACTGGCTCGGGCAATGCGGATGACTCAGGTGGCTCGCATGCGTAGCTCGGATCTAAGGCTAGAAGCGACCCAACTGATCACTCCGTGGATCAGGCGGACGACTGAGGAAGAAGCGATTTGCACACTCACTGACTCGGATGACAACTCGGTTCAGTCTAACATTTGTTGA

Protein sequence

MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNSVQSNIC
Homology
[Close]
BLAST of IVF0018868.2 vs. ExPASy TrEMBL
Match: A0A5D3CTR1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00620 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.7e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS 60
          MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS
Sbjct: 1  MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS 60

[Close]
BLAST of IVF0018868.2 vs. ExPASy TrEMBL
Match: A0A5A7TS85 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005740 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 16 MRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSD 58
          MRMTQVAR RSSDLRLEATQLITP IRRTTEEEA+CTLTDSD
Sbjct: 1  MRMTQVARTRSSDLRLEATQLITPRIRRTTEEEAVCTLTDSD 42

[Close]
BLAST of IVF0018868.2 vs. NCBI nr
Match: TYK13579.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 2.38e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS 60
          MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS
Sbjct: 1  MGWRLAAWEDELARAMRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSDDNS 60

[Close]
BLAST of IVF0018868.2 vs. NCBI nr
Match: KAA0046010.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.85e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 16 MRMTQVARMRSSDLRLEATQLITPWIRRTTEEEAICTLTDSD 57
          MRMTQVAR RSSDLRLEATQLITP IRRTTEEEA+CTLTDSD
Sbjct: 1  MRMTQVARTRSSDLRLEATQLITPRIRRTTEEEAVCTLTDSD 42

The following BLAST results are available for this feature:
BLAST of IVF0018868.2 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018868.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CTR15.7e-24100.00Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00620 PE... [more]
A0A5A7TS852.1e-1092.86Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005740 P... [more]
BLAST of IVF0018868.2 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK13579.12.38e-32100.00transposase [Cucumis melo var. makuwa][more]
KAA0046010.11.85e-1492.86transposase [Cucumis melo var. makuwa][more]
BLAST of IVF0018868.2 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0018868IVF0018868gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018868.2-exonIVF0018868.2-exon-chr11:4888342..4888542exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0018868.2-cdsIVF0018868.2-cds-chr11:4888342..4888542CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0018868.2IVF0018868.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity