IVF0018809.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0018809.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr12: 11597536 .. 11597811 (-)
Sequence length	276
RNA-Seq Expression	IVF0018809.1
Synteny	IVF0018809.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACAGGCTGAGCTCAAGGACTTCTGTTGTTCGTCCCAAGAAAACGAGAGCGAGAACGCCCCGGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCTCCCGACGGTTTCGTCCTTTTGCTCCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTTGTACTCCGAGGAATTGAACCCACACTTCTGGCATGTTCTCTGA

mRNA sequence

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACAGGCTGAGCTCAAGGACTTCTGTTGTTCGTCCCAAGAAAACGAGAGCGAGAACGCCCCGGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCTCCCGACGGTTTCGTCCTTTTGCTCCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTTGTACTCCGAGGAATTGAACCCACACTTCTGGCATGTTCTCTGA

Coding sequence (CDS)

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACAGGCTGAGCTCAAGGACTTCTGTTGTTCGTCCCAAGAAAACGAGAGCGAGAACGCCCCGGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCTCCCGACGGTTTCGTCCTTTTGCTCCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTTGTACTCCGAGGAATTGAACCCACACTTCTGGCATGTTCTCTGA

Protein sequence

MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPDGFVLLLRIDHKSFDLRGLYSEELNPHFWHVL

Homology

[Close]

BLAST of IVF0018809.1 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
          MANASNEW+TLV CQKPLEM+LQRRKQ ELKDF CSSQEN S+NAPDS FSSWGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 GFVLLLRIDHKSFDLRGLYSEELNPHFWH 90
          GF  LLRI HKSFDL+G Y E+ N H WH
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWH 89

[Close]

BLAST of IVF0018809.1 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.4e-26
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
           MANASNEWR LV CQKPLEMHLQRRK+ EL+DF CSSQEN SENAPDS FSSWGKKRSPD
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFVLLLRIDHKS 73
           GF  LLRI HKS
Sbjct: 225 GFFPLLRIGHKS 236

[Close]

BLAST of IVF0018809.1 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 62/101 (61.39%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQ---------------ENESENA 60
           + NAS EWRTLV CQKPL+MHLQ+RK AEL+DF CSSQ               EN SENA
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSSWGKKRSPDGFVLLLRIDHKSFDLRGLYSEELNPH 87
            DSVFSS G+K+  D F  LLRI H+SFDLRG YSE+ NPH
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPH 384

[Close]

BLAST of IVF0018809.1 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.3e-22
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
          M +ASNEWRTLV CQKPLEMHLQ+RK+AEL+DF   SQEN SENA + VFSSWGKK SP+
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 GFVLLLRIDHKSFDL 76
          GF  L RI HKSFDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]

BLAST of IVF0018809.1 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 22   LQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPDGFVLLLRIDHKSFDLRGLYSE 81
            ++RR +A+LKDF CSSQEN SEN  DSVFSSW KK +PDGF  LLRI HKSFDLRG YSE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   ELNPHFWH 90
            + NPH WH
Sbjct: 1077 DFNPHSWH 1084

[Close]

BLAST of IVF0018809.1 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 8.09e-39
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
          MANASNEW+TLV CQKPLEM+LQRRKQ ELKDF CSSQEN S+NAPDS FSSWGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 GFVLLLRIDHKSFDLRGLYSEELNPHFWH 89
          GF  LLRI HKSFDL+G Y E+ N H WH
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWH 89

[Close]

BLAST of IVF0018809.1 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 7.50e-31
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
           MANASNEWR LV CQKPLEMHLQRRK+ EL+DF CSSQEN SENAPDS FSSWGKKRSPD
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFVLLLRIDHKS 72
           GF  LLRI HKS
Sbjct: 225 GFFPLLRIGHKS 236

[Close]

BLAST of IVF0018809.1 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 3.40e-28
Identity = 62/101 (61.39%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQ---------------ENESENA 60
           + NAS EWRTLV CQKPL+MHLQ+RK AEL+DF CSSQ               EN SENA
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSSWGKKRSPDGFVLLLRIDHKSFDLRGLYSEELNPH 86
            DSVFSS G+K+  D F  LLRI H+SFDLRG YSE+ NPH
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPH 384

[Close]

BLAST of IVF0018809.1 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.24e-27
Identity = 58/87 (66.67%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPD 60
          M +ASNEWRTLV CQKPLEMHLQ+RK+AEL+DF   SQEN SENA + VFSSWGKK SP+
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 GFVLLLRIDHKSFDLRG--LYSEELNP 85
          GF  L RI HKSFDL    L +  + P
Sbjct: 61 GFFPLFRIGHKSFDLEDHTLKTSTITP 87

[Close]

BLAST of IVF0018809.1 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 1.02e-23
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 22   LQRRKQAELKDFCCSSQENESENAPDSVFSSWGKKRSPDGFVLLLRIDHKSFDLRGLYSE 81
            ++RR +A+LKDF CSSQEN SEN  DSVFSSW KK +PDGF  LLRI HKSFDLRG YSE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   ELNPHFWHV 90
            + NPH WH 
Sbjct: 1077 DFNPHSWHA 1085

The following BLAST results are available for this feature:

BLAST of IVF0018809.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018809.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVV0	2.1e-32	78.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFP2	8.4e-26	84.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGX3	1.1e-22	61.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E5W4	4.3e-22	74.67	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V5J2	2.6e-19	72.06	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]

BLAST of IVF0018809.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057641.1	8.09e-39	78.65	hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]	[more]
TYK22521.1	7.50e-31	84.72	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0040927.1	3.40e-28	61.39	hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061...	[more]
KAA0035524.1	1.24e-27	66.67	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0062888.1	1.02e-23	71.01	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]

BLAST of IVF0018809.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..57

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0018809	IVF0018809	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018809.1-exon	IVF0018809.1-exon-chr12:11597536..11597811	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018809.1-cds	IVF0018809.1-cds-chr12:11597536..11597811	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0018809.1	IVF0018809.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity