IVF0018361.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0018361.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr04: 16409781 .. 16409978 (+)
Sequence length	198
RNA-Seq Expression	IVF0018361.1
Synteny	IVF0018361.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTGCGAGTAGTGCCACGACCTTGACGCAATCCATGGTAGAGCTTCAATTATGGTTTGAGCTTGATGAAGCTAAGCGAGCAATTGAAGAACATACAAGAAAGCAAGATATGTTAGCTTCACAAGTGGAACAAATGTGGAAGGTCATAGAAGACATGACTCCGGCGCAACCAAGACCACCTTATGATCCCTAG

mRNA sequence

ATGGCTAGTGCGAGTAGTGCCACGACCTTGACGCAATCCATGGTAGAGCTTCAATTATGGTTTGAGCTTGATGAAGCTAAGCGAGCAATTGAAGAACATACAAGAAAGCAAGATATGTTAGCTTCACAAGTGGAACAAATGTGGAAGGTCATAGAAGACATGACTCCGGCGCAACCAAGACCACCTTATGATCCCTAG

Coding sequence (CDS)

ATGGCTAGTGCGAGTAGTGCCACGACCTTGACGCAATCCATGGTAGAGCTTCAATTATGGTTTGAGCTTGATGAAGCTAAGCGAGCAATTGAAGAACATACAAGAAAGCAAGATATGTTAGCTTCACAAGTGGAACAAATGTGGAAGGTCATAGAAGACATGACTCCGGCGCAACCAAGACCACCTTATGATCCCTAG

Protein sequence

MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPRPPYDP

Homology

[Close]

BLAST of IVF0018361.1 vs. ExPASy TrEMBL
Match: A0A5A7UJ43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2359G00030 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 60
           MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR
Sbjct: 48  MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 107

Query: 61  PPYDP 66
           PPYDP
Sbjct: 108 PPYDP 112

[Close]

BLAST of IVF0018361.1 vs. ExPASy TrEMBL
Match: A0A5D3BXI8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00610 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 60
           MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR
Sbjct: 413 MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 472

Query: 61  PPYDP 66
           PPYDP
Sbjct: 473 PPYDP 477

[Close]

BLAST of IVF0018361.1 vs. ExPASy TrEMBL
Match: A0A5D3CLB0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001370 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASASSATT-LTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQP 60
          MAS SSATT   QSMVELQL   L+EAKRAIEE TR  ++LAS+VE++WK+I+DMT AQ 
Sbjct: 24 MASVSSATTSCLQSMVELQLRVNLNEAKRAIEEQTRNHNVLASEVERIWKLIKDMTRAQQ 83

Query: 61 RPPYDP 66
           PP+DP
Sbjct: 84 GPPHDP 89

[Close]

BLAST of IVF0018361.1 vs. ExPASy TrEMBL
Match: A0A5A7THJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001050 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MASASSA-TTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQP 60
           MA ASSA T+  QS VELQL  EL EAKRAIEE TRKQD LAS+VE+  K+IEDMT AQ 
Sbjct: 88  MARASSAMTSCLQSTVELQLRVELYEAKRAIEEQTRKQDTLASEVERTRKLIEDMTGAQQ 147

Query: 61  RPPYDP 66
            PP+DP
Sbjct: 148 GPPHDP 153

[Close]

BLAST of IVF0018361.1 vs. ExPASy TrEMBL
Match: A0A5D3C3P5 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00010 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2   ASASSATT-LTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 61
           A+ S+ATT   QS VELQLW  LDE+   IE+  +  D+LAS+VEQMWK+IEDMT AQ  
Sbjct: 48  ANVSNATTSCLQSTVELQLWAALDESMPRIEQQIKNHDVLASEVEQMWKLIEDMTRAQQE 107

Query: 62  PPYDP 66
           PP++P
Sbjct: 108 PPHNP 112

[Close]

BLAST of IVF0018361.1 vs. NCBI nr
Match: KAA0055174.1 (hypothetical protein E6C27_scaffold2359G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 1.60e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 60
           MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR
Sbjct: 48  MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 107

Query: 61  PPYDP 65
           PPYDP
Sbjct: 108 PPYDP 112

[Close]

BLAST of IVF0018361.1 vs. NCBI nr
Match: TYK03698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 4.54e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 60
           MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR
Sbjct: 413 MASASSATTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 472

Query: 61  PPYDP 65
           PPYDP
Sbjct: 473 PPYDP 477

[Close]

BLAST of IVF0018361.1 vs. NCBI nr
Match: TYK11954.1 (uncharacterized protein E5676_scaffold177G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.06e-16
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASASSATT-LTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQP 60
          MAS SSATT   QSMVELQL   L+EAKRAIEE TR  ++LAS+VE++WK+I+DMT AQ 
Sbjct: 24 MASVSSATTSCLQSMVELQLRVNLNEAKRAIEEQTRNHNVLASEVERIWKLIKDMTRAQQ 83

Query: 61 RPPYDP 65
           PP+DP
Sbjct: 84 GPPHDP 89

[Close]

BLAST of IVF0018361.1 vs. NCBI nr
Match: KAA0042882.1 (uncharacterized protein E6C27_scaffold44G003990 [Cucumis melo var. makuwa] >TYK05285.1 uncharacterized protein E5676_scaffold108G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.20e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MASASSA-TTLTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQP 60
           MA ASSA T+  QS VELQL  EL EAKRAIEE TRKQD LAS+VE+  K+IEDMT AQ 
Sbjct: 88  MARASSAMTSCLQSTVELQLRVELYEAKRAIEEQTRKQDTLASEVERTRKLIEDMTGAQQ 147

Query: 61  RPPYDP 65
            PP+DP
Sbjct: 148 GPPHDP 153

[Close]

BLAST of IVF0018361.1 vs. NCBI nr
Match: KAA0025322.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK06447.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.04e-13
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2   ASASSATT-LTQSMVELQLWFELDEAKRAIEEHTRKQDMLASQVEQMWKVIEDMTPAQPR 61
           A+ S+ATT   QS VELQLW  LDE+   IE+  +  D+LAS+VEQMWK+IEDMT AQ  
Sbjct: 48  ANVSNATTSCLQSTVELQLWAALDESMPRIEQQIKNHDVLASEVEQMWKLIEDMTRAQQE 107

Query: 62  PPYDP 65
           PP++P
Sbjct: 108 PPHNP 112

The following BLAST results are available for this feature:

BLAST of IVF0018361.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018361.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ43	1.2e-26	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BXI8	1.2e-26	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CLB0	2.4e-11	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7THJ4	2.7e-10	69.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C3P5	3.0e-09	58.46	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of IVF0018361.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055174.1	1.60e-36	100.00	hypothetical protein E6C27_scaffold2359G00030 [Cucumis melo var. makuwa]	[more]
TYK03698.1	4.54e-33	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK11954.1	1.06e-16	66.67	uncharacterized protein E5676_scaffold177G001370 [Cucumis melo var. makuwa]	[more]
KAA0042882.1	1.20e-14	69.70	uncharacterized protein E6C27_scaffold44G003990 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0025322.1	1.04e-13	58.46	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK06447.1 zin...	[more]

BLAST of IVF0018361.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0018361	IVF0018361	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018361.1-exon	IVF0018361.1-exon-chr04:16409781..16409978	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0018361.1-cds	IVF0018361.1-cds-chr04:16409781..16409978	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0018361.1	IVF0018361.1-protein	polypeptide