IVF0017810.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0017810.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr10: 12989359 .. 12989793 (+)
Sequence length	435
RNA-Seq Expression	IVF0017810.1
Synteny	IVF0017810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG

mRNA sequence

ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG

Coding sequence (CDS)

ATGCAAACACATCCTGTAGCAAAGGGCCTCCTTAACAAATCGTTTTCCTATTACGACGAACTTGCATATGTGTTTGGGAGGGATAGGGTGATGGGTCACTTTGTAGAGACGTTCATCGATGTCGGGTCCAATGACCCTAGCTGGTACGAAGGGTTTCAAACGACTGATGGAAACGATAAGGAGTTCCCCAGCATGTACAGTCAGGGGTTTGACATGTCCCAGGATGATGTACGTGCTTCACACCCTGCTTGCACATCGGAGTGTAGGACCGGATCGAATGGATCAAAGCAACGAAGGGAAGGGCAGTGGGTAGGTGAGATTGAGATGATACATGAGGCGCTGGAGTGTGAGAATGACCAGCTGAGGATGATTGCAGAGTGGCCTTCCCGCACGCTGCAGAATGAAACCACAATTTTCCAGGAAGTTCTACGCTAG

Protein sequence

MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRTLQNETTIFQEVLR

Homology

[Close]

BLAST of IVF0017810.1 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 7.9e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
           LRMIAEWPSRTLQNETTIFQEVLR
Sbjct: 206 LRMIAEWPSRTLQNETTIFQEVLR 229

[Close]

BLAST of IVF0017810.1 vs. ExPASy TrEMBL
Match: A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           MQ+HP AKGLLNK FSYYDELAYVF RDR  G F ETF+D+ SN+ + YEGF  +D ND 
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFP MYSQ   MSQDDVRAS P   S+ RTGS+GSK++RE QW GEIEMIH ALEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRMIAEWPSRTLQNETTI 139
           LR I EW +R L N+TT+
Sbjct: 189 LRTIVEWSARALANDTTV 206

[Close]

BLAST of IVF0017810.1 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.1e-43
Identity = 90/144 (62.50%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           +++HP AK LLNK FSYYDELAYVF  DR  G FVETF D+GSN+P+ YEGF  +DGND 
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFP MYSQG D+SQDDVR S PACTS+ R  S+ SK++R  Q  GE+++I+ AL+C NDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297

Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 145
           LR I EWP+R   NET + QE LR
Sbjct: 298 LRTIIEWPTRPFANETFVRQEFLR 321

[Close]

BLAST of IVF0017810.1 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43
Identity = 93/142 (65.49%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 3   THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
           +HP AKGL NK F YYDELAYVFG DR+M  FV+TF DVGSN P  Y+ F   DGN+ EF
Sbjct: 28  SHPAAKGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNE-EF 87

Query: 63  PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
           PSMYSQG DMSQ+DVRAS P+ TS+ R  S+GSK++RE Q  GEIE+IH A+EC NDQLR
Sbjct: 88  PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147

Query: 123 MIAEWPSRTLQNETTIFQEVLR 145
            IAEWP+R L N+T + QE+LR
Sbjct: 148 TIAEWPARALANDTHVRQELLR 168

[Close]

BLAST of IVF0017810.1 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.2e-40
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 3   THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
           +HPV KGLLNK F +YDEL YVFGRDR  GHF ETF DVGSN+P  YEGF   DGN KEF
Sbjct: 52  SHPVRKGLLNKLFPFYDELVYVFGRDRARGHFAETFTDVGSNEPIRYEGFDIPDGN-KEF 111

Query: 63  PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
           PS+Y+QG +MSQ+DVRAS P+   E R GS+GSK++R  Q   E+E+I+ A EC NDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171

Query: 123 MIAEWPSRTLQNETTIFQE 142
           ++AEWP+R L N+  + Q+
Sbjct: 172 IVAEWPARALANDNHVRQK 189

[Close]

BLAST of IVF0017810.1 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (770), Expect = 7.63e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 144
           LRMIAEWPSRTLQNETTIFQEVLR
Sbjct: 206 LRMIAEWPSRTLQNETTIFQEVLR 229

[Close]

BLAST of IVF0017810.1 vs. NCBI nr
Match: KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 1.20e-58
Identity = 93/138 (67.39%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           MQ+HP AKGLLNK FSYYDELAYVF RDR  G F ETF+D+ SN+ + YEGF  +D ND 
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFP MYSQ   MSQDDVRAS P   S+ RTGS+GSK++RE QW GEIEMIH ALEC NDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRMIAEWPSRTLQNETTI 138
           LR I EW +R L N+TT+
Sbjct: 189 LRTIVEWSARALANDTTV 206

[Close]

BLAST of IVF0017810.1 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 7.61e-55
Identity = 93/142 (65.49%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 3   THPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEF 62
           +HP AKGL NK F YYDELAYVFG DR+M  FV+TF DVGSN P  Y+ F   DGN+ EF
Sbjct: 28  SHPAAKGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNE-EF 87

Query: 63  PSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLR 122
           PSMYSQG DMSQ+DVRAS P+ TS+ R  S+GSK++RE Q  GEIE+IH A+EC NDQLR
Sbjct: 88  PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147

Query: 123 MIAEWPSRTLQNETTIFQEVLR 144
            IAEWP+R L N+T + QE+LR
Sbjct: 148 TIAEWPARALANDTHVRQELLR 168

[Close]

BLAST of IVF0017810.1 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (463), Expect = 1.89e-53
Identity = 90/144 (62.50%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           +++HP AK LLNK FSYYDELAYVF  DR  G FVETF D+GSN+P+ YEGF  +DGND 
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EFP MYSQG D+SQDDVR S PACTS+ R  S+ SK++R  Q  GE+++I+ AL+C NDQ
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQ 297

Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 144
           LR I EWP+R   NET + QE LR
Sbjct: 298 LRTIIEWPTRPFANETFVRQEFLR 321

[Close]

BLAST of IVF0017810.1 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 4.41e-51
Identity = 86/144 (59.72%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 1   MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 60
           MQ+HP AKGLLNKSF YYDELAY+F RDR    F+ETF D+GSN+P  YEGF  +DGN+ 
Sbjct: 1   MQSHPTAKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE- 60

Query: 61  EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 120
           EF S+YSQG DMSQ+DV AS PA TS  R  S+  K++R  Q  GEI++IH AL+C NDQ
Sbjct: 61  EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQ 120

Query: 121 LRMIAEWPSRTLQNETTIFQEVLR 144
           L+ I EW +R L N T + QE +R
Sbjct: 121 LKKIVEWHARALANNTHVHQEFIR 143

The following BLAST results are available for this feature:

BLAST of IVF0017810.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS68	7.9e-79	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DXB2	1.2e-45	67.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQI7	3.1e-43	62.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4I8	7.0e-43	65.49	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BD15	3.2e-40	60.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067019.1	7.63e-102	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p...	[more]
KAA0055946.1	1.20e-58	67.39	retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p...	[more]
KAA0050190.1	7.61e-55	65.49	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
KAA0033884.1	1.89e-53	62.50	retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p...	[more]
KAA0050806.1	4.41e-51	59.72	retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p...	[more]

BLAST of IVF0017810.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0017810	IVF0017810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017810.1-exon	IVF0017810.1-exon-chr10:12989359..12989793	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017810.1-cds	IVF0017810.1-cds-chr10:12989359..12989793	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0017810.1	IVF0017810.1-protein	polypeptide