IVF0017356.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0017356.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	chr04: 29273397 .. 29275232 (+)
Sequence length	966
RNA-Seq Expression	IVF0017356.2
Synteny	IVF0017356.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTTATTCTCTGGCTGCTGCTGCTGCTGCAGCTTCAGCTTCTTCATCTCCACTCTACAAGAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACAAATTGAAGCTTCTCAACCTCACAATCCATTTACCCAATTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATATCCACTGTGCGCCTCCGGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGAGACGTACAAGAATCGGATGGTGAAGAACAAACCCAAGAAGAAGATGAACAAAAAATATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCAAGTGGTTTCTGTGCAGGTTTGTGATTGAGCTTGTTTTTTTAGGGCTAATTAGAACTGCTTGACCATTGTGGGTTCTCATGTGATTTATCTTCTGCATCTTATGTTAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTGTAACTTACTTATATTCTCTCTTTTTTCTTTCATTTTCTTTTAGCTTAACAATTGTGGAGATTTTTTGCATACTTTCTAACTTGTGAGTTTGAAAGCAGTGGTTAGAAACTAGGGTTGGATATAATAGTTTGTTTTAGCTGTTAGCTTAACTTACTAGCGGTTGTTACTTTCATATGCGTTGATAGAAGGGCAGAGTTTTTTGGCAGTTCTTTAAGAGTAATTTATTTAGAAAGGTAGAGAAGTTGTGTGAAGGTTTTTGTAGAATTAGGTGATATTAGTGTTAGTGATACACATTAGAGGGTGCTGATGATTCTAACAGAATGGAGCATACAAATAGATTCTAAATGCTTAAGTGTAATAGTTTTGGTACCACGGTACAATGTCTATATATGATAGACAAATTTATTGACAGTGTGTAAGATATTCAAGATTGCTATGATGTTACTAATGGTTGCACTACTTGTCAGCAAATCGGCGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGTGAAAAGGAAGTAATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGCCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGGTCATCTATGATAGGGCATCCGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGTAAGGAAGTGGAGTTACTTTCTAAAAGATTGCGAATCTAGAATTAATTATTTAAATAGAGTAGTTGGCAATTTGATTCTAGAGATTAGAAAACTTGAACCTGTGACAGAATTTACTGATGTGATTGATCCCTAACTACATTATTACTTTTCAACTACTTCAAAATGGGCCCATATTAACATAAACCTTGCAAACCAGAATTACATTATTTGAGAAATAGCCATGAAAAAATGTACCTGCATTTTGTATGTTTAGCCCTGTGTTATAGATACAAGTCACACATTAACCTCCTCCTATGCACATGCCTACAGGAAGTTGAAGGGCGGCCGCTGCGTTTGAATATTGCTGCAGAACGGGCCCCAACTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGA

mRNA sequence

ATGTCGGCTTATTCTCTGGCTGCTGCTGCTGCTGCAGCTTCAGCTTCTTCATCTCCACTCTACAAGAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACAAATTGAAGCTTCTCAACCTCACAATCCATTTACCCAATTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATATCCACTGTGCGCCTCCGGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGAGACGTACAAGAATCGGATGGTGAAGAACAAACCCAAGAAGAAGATGAACAAAAAATATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCAAGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGCGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGTGAAAAGGAAGTAATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGCCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGGTCATCTATGATAGGGCATCCGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTGCGTTTGAATATTGCTGCAGAACGGGCCCCAACTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGA

Coding sequence (CDS)

ATGTCGGCTTATTCTCTGGCTGCTGCTGCTGCTGCAGCTTCAGCTTCTTCATCTCCACTCTACAAGAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACAAATTGAAGCTTCTCAACCTCACAATCCATTTACCCAATTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATATCCACTGTGCGCCTCCGGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGAGACGTACAAGAATCGGATGGTGAAGAACAAACCCAAGAAGAAGATGAACAAAAAATATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCAAGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGCGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGTGAAAAGGAAGTAATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGCCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGGTCATCTATGATAGGGCATCCGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTGCGTTTGAATATTGCTGCAGAACGGGCCCCAACTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGA

Protein sequence

MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPAAFPRTENTIDSKELLTSISA

Homology

[Close]

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.7e-84
Identity = 178/329 (54.10%), Postives = 232/329 (70.52%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPK------HNKLKLLNLTIHLP 60
           MS    + AA A+++S+S LY    FTQ P     H S        + K+    L  H P
Sbjct: 1   MSGCCFSFAATASTSSTSLLY---LFTQKPKFSVDHLSLSTYNTHFNFKINSTKLKAHFP 60

Query: 61  NFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGK 120
               L  SS+    CA  + D +E+   + E      ++ EE+ +E++E+  S S E G+
Sbjct: 61  -ISSLYRSSIFLSTCASVS-DGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGR 120

Query: 121 LYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LY+GNLP++MTSSQLSE+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+F
Sbjct: 121 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 180

Query: 181 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRD 240
           DGSQ+GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LRD
Sbjct: 181 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRD 240

Query: 241 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAE 300
           AF +QPG +SAKVIYDR+SG+SRGFGF++F +AE   SAL++MN VE+EGRPLRLN+A +
Sbjct: 241 AFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQ 300

Query: 301 RAPTS--PAAFPRTENTIDSKELLTSISA 322
           +AP S  P      EN  D+ ELL+S+S+
Sbjct: 301 KAPVSSPPVVETSPENDSDNSELLSSLSS 324

[Close]

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.8e-81
Identity = 178/335 (53.13%), Postives = 233/335 (69.55%), Query Frame = 0


Query: 2   SAY--SLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPL 61
           SAY  S  A +AAA+ASS+  +     +   +Q+   F+PK  K     L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFK-----LVANCPN--PL 62

Query: 62  SFSSVSHIH---C-----APPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSRE 121
              S    H   C     A  A DE++ S  E E  + +  +GEE+  EE++Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAER-----APTSPAAFPRTENTIDSKELLTSISA 322
           A+ER     +P S       E +++S E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-38
Identity = 103/281 (36.65%), Postives = 156/281 (55.52%), Query Frame = 0


Query: 32  QIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQE 91
           Q PS   P ++ L   +L     N   LS SS S   C+   F+    +       D  E
Sbjct: 17  QTPSSLKP-NSTLSFFSLPSSSLN---LSLSSSSTGLCSIKPFESSFSTRVALSGFDQLE 76

Query: 92  SDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTD 151
            D E   Q    + +       KL++GNLP+++ S+ L+ +F  AG V  V+VIYDK+T 
Sbjct: 77  DDVEVAEQPRFSEDL-------KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTG 136

Query: 152 RSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP-----------RGGEKEVM 211
           RSRGF FVTM+T EE + A + F+G +I GR +RVN    P           RGG     
Sbjct: 137 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 196

Query: 212 GPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASG 271
           G +  +S        + VDS +++Y GNL WG+   +L++ F  Q  ++ AKV+YDR SG
Sbjct: 197 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 256

Query: 272 KSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAER 296
           +SRGFGFV++ ++++   A++S+NGV+++GR +R++ A ER
Sbjct: 257 RSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286

[Close]

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-38
Identity = 101/282 (35.82%), Postives = 157/282 (55.67%), Query Frame = 0


Query: 31  NQIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQ 90
           +Q PS   P ++ L   +L     N   LS SS+ H     P           +++ D  
Sbjct: 16  SQTPSSLKP-NSTLSFFSLPSSSLNL-SLSSSSIGHSASIKPFESSFSTRVALSDF-DQL 75

Query: 91  ESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVT 150
           E D E   Q    + +       KL++GNLP+++ S+ L+ +F  AG V  V+VIYDK++
Sbjct: 76  EDDVEVAEQPRFSEDL-------KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLS 135

Query: 151 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP-----------RGGEKEV 210
            RSRGF FVTM+T EE + A + F+G +I GR +RVN    P           RGG    
Sbjct: 136 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 195

Query: 211 MGPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRAS 270
            G +  +S        + VDS +++Y GNL WG+   +L++ F  Q  ++ AKV+YDR S
Sbjct: 196 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 255

Query: 271 GKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAER 296
           G+SRGFGFV++ +A++   A++S+NG++++GR +R++ A ER
Sbjct: 256 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287

[Close]

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.2e-37
Identity = 104/286 (36.36%), Postives = 158/286 (55.24%), Query Frame = 0


Query: 12  AASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVSHIHCAP 71
           A+SASS      HF +  P  +P       ++   L+     P+   LS SS S   C  
Sbjct: 2   ASSASS-----LHFLSLTPQTLP--LPKPTSQTTSLSFFSLPPSSLNLSLSSSS--SCFS 61

Query: 72  PAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSE 131
             F          +  DV+  DG++  +EE      +     K+++GNLP++  S+ L+E
Sbjct: 62  SRFVRKVTLSDFDQIEDVE--DGDDGVEEERNFSPDL-----KIFVGNLPFSADSAALAE 121

Query: 132 VFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEV 191
           +F  AG V  V+VIYDK+T RSRGF FVTM++ EE + A + F+G ++ GR +RVN    
Sbjct: 122 LFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 181

Query: 192 PRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDR 251
           P   E        R   +   DS +++Y GNL WG+   +L   F  Q  ++ AKV+YDR
Sbjct: 182 PEKRENSSFRGGSRGGGS--FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 241

Query: 252 ASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAP 298
            SG+SRGFGFV++ +AE+  +A+ES++GV++ GR +R++ A  R P
Sbjct: 242 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269

[Close]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 4.2e-173
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300

Query: 301 AAFPRTENTIDSKELLTSISA 322
           AAFPRTENTIDSKELLTSISA
Sbjct: 301 AAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 5.5e-173
Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSH+HCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 61  FSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300

Query: 301 AAFPRTENTIDSKELLTSISA 322
           AAFPRTENTIDSKELLTSISA
Sbjct: 301 AAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 5.5e-173
Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 48  MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 107

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSH+HCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 108 FSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 167

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 168 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 227

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 228 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 287

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 288 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 347

Query: 301 AAFPRTENTIDSKELLTSISA 322
           AAFPRTENTIDSKELLTSISA
Sbjct: 348 AAFPRTENTIDSKELLTSISA 368

[Close]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL
Match: A0A0A0LBL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 4.0e-163
Identity = 302/323 (93.50%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60
           MSAYSL  AAAAAAA+ SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSLSMAAAAAAAAVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDSKELLTSISA 322
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.6e-143
Identity = 274/328 (83.54%), Postives = 296/328 (90.24%), Query Frame = 0


Query: 1   MSAYSLAAAAAAA-------SASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHL 60
           MSA SL  AAAAA       S+SSSP  K  FFTQ PN+IPSHFSPK   LKLL L IHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAG 120
           PNFYPL+FSS SH++CAPPAF+ LE+SDP +E  + +ESDG+E+++EEDEQK+S SR+AG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 300
           +AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 ERAPTSPAAFPRTENTIDSKELLTSISA 322
           +RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of IVF0017356.2 vs. NCBI nr
Match: XP_008442930.1 (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 616 bits (1588), Expect = 6.22e-222
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300

Query: 301 AAFPRTENTIDSKELLTSISA 321
           AAFPRTENTIDSKELLTSISA
Sbjct: 301 AAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of IVF0017356.2 vs. NCBI nr
Match: TYK25330.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 615 bits (1587), Expect = 8.84e-222
Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSH+HCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 61  FSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300

Query: 301 AAFPRTENTIDSKELLTSISA 321
           AAFPRTENTIDSKELLTSISA
Sbjct: 301 AAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of IVF0017356.2 vs. NCBI nr
Match: KAA0043803.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 615 bits (1587), Expect = 5.06e-221
Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 60
           MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS
Sbjct: 48  MSAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLS 107

Query: 61  FSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 120
           FSSVSH+HCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL
Sbjct: 108 FSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNL 167

Query: 121 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 180
           PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG
Sbjct: 168 PYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 227

Query: 181 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 240
           GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP
Sbjct: 228 GRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 287

Query: 241 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 300
           GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP
Sbjct: 288 GILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSP 347

Query: 301 AAFPRTENTIDSKELLTSISA 321
           AAFPRTENTIDSKELLTSISA
Sbjct: 348 AAFPRTENTIDSKELLTSISA 368

[Close]

BLAST of IVF0017356.2 vs. NCBI nr
Match: XP_004136521.3 (33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothetical protein Csa_001333 [Cucumis sativus])

HSP 1 Score: 584 bits (1505), Expect = 2.99e-209
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDSKELLTSISA 321
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of IVF0017356.2 vs. NCBI nr
Match: XP_038904039.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 561 bits (1446), Expect = 2.92e-200
Identity = 293/320 (91.56%), Postives = 304/320 (95.00%), Query Frame = 0


Query: 2   SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 61
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFSPK N LKLLNLTIHLPNFYPLSF
Sbjct: 4   SSVSMAAAAAPSVSSSSPLSKKLFFTQHPNQIPSHFSPKQNPLKLLNLTIHLPNFYPLSF 63

Query: 62  SSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 121
           SS SH+H  PPAFD LE+SDPETEY ++QESD EE+TQEEDEQK+SVSREAGKLYIGNLP
Sbjct: 64  SSPSHLHSVPPAFDGLEVSDPETEYAEIQESDAEEETQEEDEQKVSVSREAGKLYIGNLP 123

Query: 122 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 181
           YAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 124 YAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183

Query: 182 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 241
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFENQPG
Sbjct: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPG 243

Query: 242 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 301
           ILSAKVIYDRASGKSRGFGFVSFETAEDAE ALESMNGVEVEGRPLRLNIAA RAPTSPA
Sbjct: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAEFALESMNGVEVEGRPLRLNIAAGRAPTSPA 303

Query: 302 AFPRTENTIDSKELLTSISA 321
           AFPRTENTIDSKELLTSISA
Sbjct: 304 AFPRTENTIDSKELLTSISA 323

[Close]

BLAST of IVF0017356.2 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 302.8 bits (774), Expect = 3.4e-82
Identity = 178/335 (53.13%), Postives = 233/335 (69.55%), Query Frame = 0


Query: 2   SAY--SLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPL 61
           SAY  S  A +AAA+ASS+  +     +   +Q+   F+PK  K     L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFK-----LVANCPN--PL 62

Query: 62  SFSSVSHIH---C-----APPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSRE 121
              S    H   C     A  A DE++ S  E E  + +  +GEE+  EE++Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAER-----APTSPAAFPRTENTIDSKELLTSISA 322
           A+ER     +P S       E +++S E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of IVF0017356.2 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 5.1e-38
Identity = 84/219 (38.36%), Postives = 135/219 (61.64%), Query Frame = 0


Query: 91  ESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVT 150
           E DG        EQ  S      KL++GNLP+ + S+QL+++F  AG V  V+VIYDK+T
Sbjct: 72  EEDGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKIT 131

Query: 151 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNF-PEVPRGGEKEVMGPKIRSSYN 210
            RSRGF FVTM+++ E + A + F+G ++ GR +RVN  P  P+  +    GP  RSS+ 
Sbjct: 132 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGP--RSSFG 191

Query: 211 KF-----------VDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRG 270
                          S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR SG+S+G
Sbjct: 192 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG 251

Query: 271 FGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAP 298
           FGFV+++++++ ++A++S++G +++GR +R++ A  R P
Sbjct: 252 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

[Close]

BLAST of IVF0017356.2 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-34
Identity = 68/179 (37.99%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 114 KLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 173
           KLY GNLPY + S+ L+++  +      V+V+Y++ T +SRGFAFVTM+ +E+    I  
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 174 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 233
            DG++  GR ++VNF + P+  ++ +           + ++ HK++ GNL W +TS+SL 
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPL-----------YPETEHKLFVGNLSWTVTSESLA 205

Query: 234 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 293
            AF     ++ A+V++D  +G+SRG+GFV + +  + E+ALES++G E+EGR +R+N+A
Sbjct: 206 GAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of IVF0017356.2 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-33
Identity = 80/222 (36.04%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 76  ELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAE 135
           E + S+ +   GD  E D  E    E  +    S EA KL++GNL Y + S  L+ +F +
Sbjct: 114 EGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEA-KLFVGNLAYDVNSQALAMLFEQ 173

Query: 136 AGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGG 195
           AG V   +VIY++ TD+SRGF FVTM++++EA+ A+  F+   + GR + VN    PRG 
Sbjct: 174 AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGS 233

Query: 196 EKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGK 255
             E   P++        +   ++Y GNL W + +  L   F     ++ A+V+YDR +G+
Sbjct: 234 RPE-RAPRV-------YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 293

Query: 256 SRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAP 298
           SRGFGFV+    ++   A+ +++G  +EGR +R+N+A ER P
Sbjct: 294 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325

[Close]

BLAST of IVF0017356.2 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-33
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 0


Query: 95  EEQTQEEDEQKISVSREAGKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSR 154
           +E  + ED        E  KL++GNLPY + S  L+ +F +AG V   +VIY++ TD+SR
Sbjct: 95  DESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSR 154

Query: 155 GFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDS 214
           GF FVTM+T+EEA++A+  F+  ++ GR + VN    PRG   E   P++        D+
Sbjct: 155 GFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVN-RAAPRGSRPE-RQPRV-------YDA 214

Query: 215 PHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESAL 274
             +IY GNL W + S  L   F     ++ A+V+ DR +G+SRGFGFV      +   A+
Sbjct: 215 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 274

Query: 275 ESMNGVEVEGRPLRLNIAAER 296
            +++G  +EGR +++N+A ER
Sbjct: 275 AALDGQNLEGRAIKVNVAEER 286

The following BLAST results are available for this feature:

BLAST of IVF0017356.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	2.7e-84	54.10	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	4.8e-81	53.13	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08937	2.2e-38	36.65	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49314	2.9e-38	35.82	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08935	4.2e-37	36.36	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of IVF0017356.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7N1	4.2e-173	100.00	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	5.5e-173	99.69	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TK11	5.5e-173	99.69	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A0A0LBL6	4.0e-163	93.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1	[more]
A0A6J1J651	1.6e-143	83.54	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]

BLAST of IVF0017356.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442930.1	6.22e-222	100.00	PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
TYK25330.1	8.84e-222	99.69	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
KAA0043803.1	5.06e-221	99.69	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
XP_004136521.3	2.99e-209	93.81	33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothet...	[more]
XP_038904039.1	2.92e-200	91.56	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]

BLAST of IVF0017356.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	3.4e-82	53.13	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	5.1e-38	38.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	4.5e-34	37.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	2.9e-33	36.04	31-kDa RNA binding protein	[more]
AT5G50250.1	6.5e-33	37.81	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 114..187 e-value: 1.1E-27 score: 108.0 coord: 217..290 e-value: 6.8E-26 score: 102.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 218..288 e-value: 3.4E-19 score: 68.4 coord: 115..185 e-value: 6.9E-21 score: 73.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..191 score: 19.570105
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 216..294 score: 19.143719
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 75..198 e-value: 2.1E-29 score: 104.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 201..302 e-value: 6.4E-25 score: 89.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..100
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..304
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 1..304
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 114..190 e-value: 3.70677E-35 score: 120.796
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 211..300
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 110..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0017356	IVF0017356	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017356.2-exon	IVF0017356.2-exon-chr04:29273397..29273825	exon
IVF0017356.2-exon	IVF0017356.2-exon-chr04:29273917..29274018	exon
IVF0017356.2-exon	IVF0017356.2-exon-chr04:29274487..29274795	exon
IVF0017356.2-exon	IVF0017356.2-exon-chr04:29275107..29275232	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017356.2-cds	IVF0017356.2-cds-chr04:29273397..29273825	CDS
IVF0017356.2-cds	IVF0017356.2-cds-chr04:29273917..29274018	CDS
IVF0017356.2-cds	IVF0017356.2-cds-chr04:29274487..29274795	CDS
IVF0017356.2-cds	IVF0017356.2-cds-chr04:29275107..29275232	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0017356.2	IVF0017356.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding