IVF0017272.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0017272.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr04: 28092755 .. 28095158 (+)
Sequence length	2008
RNA-Seq Expression	IVF0017272.1
Synteny	IVF0017272.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGGATCTGTTCTATAGGTTGTACATCTGTGTCCTTGAGTTCTAAGGAGACAAGAACCAAAGTCTGGTGGATGAATTCTCATGCCTTGAGGCTAGAGCGTGATTAACAGTTCAACAGACCTTCGTCTGGCGGCTGTAGAGGATCGTTCTTGGCAGGCTTCAACCTGCTGGGATGGCCACAAGGCGGCCTGACAGACCTTCAATTAAGTTTTTCGATTTATTCTTCTGTTAGGGGCGTTGGGTGTTTGATTTGAGGTTAATTCTTAAAGATGTTCTCTCTAGTTTTTTGCGTTCTTTGAATGGTGGTTTAGATTGCTGCTACTTTAGGGTGGGTGTTTGGTGTTTGCTCTTCAAGTGTTCGATGAAATGTCTCCAAAACAAATTCTTGAATTGTTGTTGTTCTTATAGTAATAGAAAATAGTAGGAAACATTCCCATTCCATAACATTACAACAGCCATATCCAAATCGGTGTATGAATTCCCTAGAACTCCATCTTTTTCCTCACTCCCTTCATTCCTGCAAATCCTTATCTCACCTCAAGCAAATCCATGGCGTCGCCATTAAAACACCCTCTCTCTCTCTCCCCAACCTCATTCCCAAGCTCATCTTTCTCTCCTCCTCCTCCTCCTCCTCCCCTGACCTTTTCTACATTCGCTCTATCCTTCTTACTCACTCCCATGATGCTCAATTCCGCCTTAATCTCTGCAACGCCATCGTCCGCAGCATTTCTCGCAACTCCACCAATCTCACGCCCATGGAATTCTTGAACGAAATGCTTCTCATCGGCCTCGAACCAGATGGGTTCACATTACCACTTGTTCTCAAGGCATTGGCTCGGACTCGAGGGATTAGAGAAGGCCAACAGATTCATGCTCGTTCAATCAAGACTGGAATGGTGGGGTTAAACGTTTATGTGACTAATACACTGATGAGACTTTATTCCGTCTGTGGCTCTATCCACGATGTCCAGAAGGTGTTCGACGAATGTCCTCACCGAGACTTAGTGTCTTGGACTATACTCATTCAAGCGTTTACGAAGGCCGGGCTATACAGCAGAGCAGTAGAAGCTTTTATGGAAATGTGTGATTTGAGGCTAAGAGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCAAAAGGTGCATTCCTACATCCGCTATTACATTGACATGAATGCAGATGTATTTGTGGGCAATGCTCTGATAGATATGTACTTGAAATGTGATGATCTGAACTCTGCTAACAAAGTGTTCGACGAAATGCCTGTGAGAAATGTTGTTACCTGGAATGCTATGATTTCGGGATTGGCTTACCAAGGTCGGTACAGGGAAGCTCTCGATACGTTCCGTATCATGCAAAACAAAGGGGTCAAGCCAGATGAAGTGACCTTAGTGGGGGTTTTGAATTCTTGTGCAAACCTTGGAGTCCTTGAAATAGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTAGCCGACGAATTTGTTGGTAATGCGCTTCTTGATATGTATGCAAAATGTGGAAGTATAGATGAAGCTTTTAGGGTGTTTGAGAGCATGAAAAAGAGGGATGTTTATTCATACACTGCCATGATTGTTGGTTTAGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCGAGATGTTTAGAGTTGGTATCGAGCCGAACGAAGTAACATTTTTAGGTCTTCTTATGGCTTGTAGCCATGGCGGATTGGTTGCTGAAGGGAAGAAGTATTTTTTTGAGATGTCAGATAAATATAAGCTTAGACCTCAATCAGAACATTACGGTTGCATGATTGACCTTCTTGGTCGTGTAGGGTTGGTGAAGGAAGCAGAAGAGATTGTTCACAAAATGGAAATCAGGCCCGATGTCTTTGCTTGTGGAGCGTTATTAGGTGCGTGCAGGATTCATGGAAATGTCGATATTGGTGAAAGTGTGATGCAAAAGTTGACGGAGATAGATCCGGATGAAGATGGTACGTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATCGAAATTAAGAAAGACAATGAAAATTAAGAAGATGAGAAAGACCCCTGGATGTAGTTCGATTGAAGTTGATGGTGTCGTTCATGAATTTCGAAAGGGTGACAAATCACATCCCAGGAGCAAAGTTATATACTTTGTATTGGAAGGAATTGCTACTCATTTAAAGAGCTATGGGATTGTGGAACATAGTACATTTTGTATATAAGTTTTCCCTACCAACTAAAATAAAAAAGCTTACAACTTAATCTTATTAGGGTAGAACTTGAACTAATCTAAGTAGCTTTCTTTTTATTATCACTTTTTCCATTTTTTTCCTATAGGTGG

mRNA sequence

ACAGGATCTGTTCTATAGGTTGTACATCTGTGTCCTTGAGTTCTAAGGAGACAAGAACCAAAGTCTGGTGGATGAATTCTCATGCCTTGAGGCTAGAGCGTGATTAACAGTTCAACAGACCTTCGTCTGGCGGCTGTAGAGGATCGTTCTTGGCAGGCTTCAACCTGCTGGGATGGCCACAAGGCGGCCTGACAGACCTTCAATTAAGTTTTTCGATTTATTCTTCTGTTAGGGGCGTTGGGTGTTTGATTTGAGGTTAATTCTTAAAGATGTTCTCTCTAGTTTTTTGCGTTCTTTGAATGGTGGTTTAGATTGCTGCTACTTTAGGGTGGGTGTTTGGTGTTTGCTCTTCAAGTGTTCGATGAAATGTCTCCAAAACAAATTCTTGAATTGTTGTTGTTCTTATAGTAATAGAAAATAGTAGGAAACATTCCCATTCCATAACATTACAACAGCCATATCCAAATCGGTGTATGAATTCCCTAGAACTCCATCTTTTTCCTCACTCCCTTCATTCCTGCAAATCCTTATCTCACCTCAAGCAAATCCATGGCGTCGCCATTAAAACACCCTCTCTCTCTCTCCCCAACCTCATTCCCAAGCTCATCTTTCTCTCCTCCTCCTCCTCCTCCTCCCCTGACCTTTTCTACATTCGCTCTATCCTTCTTACTCACTCCCATGATGCTCAATTCCGCCTTAATCTCTGCAACGCCATCGTCCGCAGCATTTCTCGCAACTCCACCAATCTCACGCCCATGGAATTCTTGAACGAAATGCTTCTCATCGGCCTCGAACCAGATGGGTTCACATTACCACTTGTTCTCAAGGCATTGGCTCGGACTCGAGGGATTAGAGAAGGCCAACAGATTCATGCTCGTTCAATCAAGACTGGAATGGTGGGGTTAAACGTTTATGTGACTAATACACTGATGAGACTTTATTCCGTCTGTGGCTCTATCCACGATGTCCAGAAGGTGTTCGACGAATGTCCTCACCGAGACTTAGTGTCTTGGACTATACTCATTCAAGCGTTTACGAAGGCCGGGCTATACAGCAGAGCAGTAGAAGCTTTTATGGAAATGTGTGATTTGAGGCTAAGAGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCAAAAGGTGCATTCCTACATCCGCTATTACATTGACATGAATGCAGATGTATTTGTGGGCAATGCTCTGATAGATATGTACTTGAAATGTGATGATCTGAACTCTGCTAACAAAGTGTTCGACGAAATGCCTGTGAGAAATGTTGTTACCTGGAATGCTATGATTTCGGGATTGGCTTACCAAGGTCGGTACAGGGAAGCTCTCGATACGTTCCGTATCATGCAAAACAAAGGGGTCAAGCCAGATGAAGTGACCTTAGTGGGGGTTTTGAATTCTTGTGCAAACCTTGGAGTCCTTGAAATAGGGTTGGTGAAGGAAGCAGAAGAGATTGTTCACAAAATGGAAATCAGGCCCGATGTCTTTGCTTGTGGAGCGTTATTAGGTGCGTGCAGGATTCATGGAAATGTCGATATTGGTGAAAGTGTGATGCAAAAGTTGACGGAGATAGATCCGGATGAAGATGGTACGTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATCGAAATTAAGAAAGACAATGAAAATTAAGAAGATGAGAAAGACCCCTGGATGTAGTTCGATTGAAGTTGATGGTGTCGTTCATGAATTTCGAAAGGGTGACAAATCACATCCCAGGAGCAAAGTTATATACTTTGTATTGGAAGGAATTGCTACTCATTTAAAGAGCTATGGGATTGTGGAACATAGTACATTTTGTATATAAGTTTTCCCTACCAACTAAAATAAAAAAGCTTACAACTTAATCTTATTAGGGTAGAACTTGAACTAATCTAAGTAGCTTTCTTTTTATTATCACTTTTTCCATTTTTTTCCTATAGGTGG

Coding sequence (CDS)

ATGAATTCCCTAGAACTCCATCTTTTTCCTCACTCCCTTCATTCCTGCAAATCCTTATCTCACCTCAAGCAAATCCATGGCGTCGCCATTAAAACACCCTCTCTCTCTCTCCCCAACCTCATTCCCAAGCTCATCTTTCTCTCCTCCTCCTCCTCCTCCTCCCCTGACCTTTTCTACATTCGCTCTATCCTTCTTACTCACTCCCATGATGCTCAATTCCGCCTTAATCTCTGCAACGCCATCGTCCGCAGCATTTCTCGCAACTCCACCAATCTCACGCCCATGGAATTCTTGAACGAAATGCTTCTCATCGGCCTCGAACCAGATGGGTTCACATTACCACTTGTTCTCAAGGCATTGGCTCGGACTCGAGGGATTAGAGAAGGCCAACAGATTCATGCTCGTTCAATCAAGACTGGAATGGTGGGGTTAAACGTTTATGTGACTAATACACTGATGAGACTTTATTCCGTCTGTGGCTCTATCCACGATGTCCAGAAGGTGTTCGACGAATGTCCTCACCGAGACTTAGTGTCTTGGACTATACTCATTCAAGCGTTTACGAAGGCCGGGCTATACAGCAGAGCAGTAGAAGCTTTTATGGAAATGTGTGATTTGAGGCTAAGAGCTGATGGGCGGACTCTGGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCAAAAGGTGCATTCCTACATCCGCTATTACATTGACATGAATGCAGATGTATTTGTGGGCAATGCTCTGATAGATATGTACTTGAAATGTGATGATCTGAACTCTGCTAACAAAGTGTTCGACGAAATGCCTGTGAGAAATGTTGTTACCTGGAATGCTATGATTTCGGGATTGGCTTACCAAGGTCGGTACAGGGAAGCTCTCGATACGTTCCGTATCATGCAAAACAAAGGGGTCAAGCCAGATGAAGTGACCTTAGTGGGGGTTTTGAATTCTTGTGCAAACCTTGGAGTCCTTGAAATAGGGTTGGTGAAGGAAGCAGAAGAGATTGTTCACAAAATGGAAATCAGGCCCGATGTCTTTGCTTGTGGAGCGTTATTAGGTGCGTGCAGGATTCATGGAAATGTCGATATTGGTGAAAGTGTGATGCAAAAGTTGACGGAGATAGATCCGGATGAAGATGGTACGTACATTCTTATGACAAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATCGAAATTAAGAAAGACAATGAAAATTAAGAAGATGAGAAAGACCCCTGGATGTAGTTCGATTGAAGTTGATGGTGTCGTTCATGAATTTCGAAAGGGTGACAAATCACATCCCAGGAGCAAAGTTATATACTTTGTATTGGAAGGAATTGCTACTCATTTAAAGAGCTATGGGATTGTGGAACATAGTACATTTTGTATATAA

Protein sequence

MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKALARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI

Homology

[Close]

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 282.7 bits (722), Expect = 7.5e-75
Identity = 160/485 (32.99%), Postives = 264/485 (54.43%), Query Frame = 0


Query: 14  HSCKSLSHLKQIHGVAIK-TPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 73
           +   S++ L+QIH  +I+   S+S   L   LIF   S  S P + Y   +      +  
Sbjct: 25  YGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVF--SKIEKP 84

Query: 74  FRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGL-EPDGFTLPLVLKALARTRGIREGQQ 133
             + + N ++R  +    +++      EM + GL EPD  T P ++KA+     +R G+ 
Sbjct: 85  INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGET 144

Query: 134 IHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAG 193
           IH+  I++G  G  +YV N+L+ LY+ CG +    KVFD+ P +DLV+W  +I  F + G
Sbjct: 145 IHSVVIRSGF-GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 204

Query: 194 LYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVG 253
               A+  + EM    ++ DG T+V +LSAC+ +G L LG++VH Y+   + +  ++   
Sbjct: 205 KPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSS 264

Query: 254 NALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQN-KGV 313
           N L+D+Y +C  +  A  +FDEM  +N V+W ++I GLA  G  +EA++ F+ M++ +G+
Sbjct: 265 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 324

Query: 314 KPDEVTLVGVLNSCANLGVLE-------------------------------IGLVKEAE 373
            P E+T VG+L +C++ G+++                                G VK+A 
Sbjct: 325 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 384

Query: 374 EIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVH 433
           E +  M ++P+V     LLGAC +HG+ D+ E    ++ +++P+  G Y+L++N+Y+S  
Sbjct: 385 EYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQ 444

Query: 434 RWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLK 465
           RW D  K+RK M    ++K PG S +EV   VHEF  GDKSHP+S  IY  L+ +   L+
Sbjct: 445 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 504

[Close]

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 3.7e-74
Identity = 148/419 (35.32%), Postives = 239/419 (57.04%), Query Frame = 0


Query: 79  NAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKALARTRGIREGQQIHARSIK 138
           NA++   +        +E   +M+   + PD  T+  V+ A A++  I  G+Q+H     
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294

Query: 139 TGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVE 198
            G  G N+ + N L+ LYS CG +     +F+  P++D++SW  LI  +T   LY  A+ 
Sbjct: 295 HGF-GSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 354

Query: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI--RYYIDMNADVFVGNALID 258
            F EM       +  T++ +L AC++LG +++G+ +H YI  R     NA   +  +LID
Sbjct: 355 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNAS-SLRTSLID 414

Query: 259 MYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVT 318
           MY KC D+ +A++VF+ +  +++ +WNAMI G A  GR   + D F  M+  G++PD++T
Sbjct: 415 MYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDIT 474

Query: 319 LVGVLNSCANLGVLEI-------------------------------GLVKEAEEIVHKM 378
            VG+L++C++ G+L++                               GL KEAEE+++ M
Sbjct: 475 FVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMM 534

Query: 379 EIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDAS 438
           E+ PD     +LL AC++HGNV++GES  + L +I+P+  G+Y+L++N+Y+S  RW + +
Sbjct: 535 EMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVA 594

Query: 439 KLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIV 465
           K R  +  K M+K PGCSSIE+D VVHEF  GDK HPR++ IY +LE +   L+  G V
Sbjct: 595 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

[Close]

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot
Match: Q0WQW5 (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 1.9e-70
Identity = 178/496 (35.89%), Postives = 252/496 (50.81%), Query Frame = 0


Query: 15  SCKSLSHLKQIHGVAIKTPSLSLPN---LIPKLIFLSSSSSSSPDLFYIRSILLTHSHDA 74
           +C  +S LKQ+H   ++T     P    L  K++ LSSS S     F +   +  HS   
Sbjct: 57  TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHS--- 116

Query: 75  QFRLN-LCNAIVRSISRNSTNLTPMEFLNEMLLIG-LEPDGFTLPLVLKALARTRGIREG 134
            F  N L  A    +SR            +ML  G   PD  T P VLKA A   G  EG
Sbjct: 117 SFMWNTLIRACAHDVSRKE---EAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEG 176

Query: 135 QQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTK 194
           +Q+H + +K G  G +VYV N L+ LY  CG +   +KVFDE P R LVSW  +I A  +
Sbjct: 177 KQVHCQIVKHGFGG-DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 236

Query: 195 AGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI--RYYIDMNAD 254
            G Y  A++ F EM       DG T+  VLSAC+ LG L+LG   H+++  +  +D+  D
Sbjct: 237 FGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMD 296

Query: 255 VFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQN 314
           V V N+LI+MY KC  L  A +VF  M  R++ +WNAMI G A  GR  EA++ F  M +
Sbjct: 297 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 356

Query: 315 K--GVKPDEVTLVGVLNSCANLG-------------------------------VLEIGL 374
           K   V+P+ VT VG+L +C + G                               +   G 
Sbjct: 357 KRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGY 416

Query: 375 VKEAEEIVHKMEIRPDVFACGALLGACRIHG-NVDIGESVMQKLTEIDPDED-------G 434
           + EA ++V  M ++PD     +LL AC   G +V++ E + + +     D +       G
Sbjct: 417 ITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSG 476

Query: 435 TYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKV 463
            Y+L++ +Y+S  RW D   +RK M    +RK PGCSSIE++G+ HEF  GD SHP++K 
Sbjct: 477 AYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQ 536

[Close]

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.7e-69
Identity = 175/535 (32.71%), Postives = 269/535 (50.28%), Query Frame = 0


Query: 8   LFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLI-FLSSSSSSSPDLFYIRSILLT 67
           LFP  +++C+++  L QIH V IK+  +       +++ F ++S     DL Y   I   
Sbjct: 26  LFP-QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF-- 85

Query: 68  HSHDAQFRLNLCNAIVRSISRNSTN--LTPMEFLNEMLLIG-LEPDGFTLPLVLKALART 127
            +   Q      N I+R  S +  +  L  +    EM+    +EP+ FT P VLKA A+T
Sbjct: 86  -NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 145

Query: 128 RGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHD------------------- 187
             I+EG+QIH  ++K G  G + +V + L+R+Y +CG + D                   
Sbjct: 146 GKIQEGKQIHGLALKYGFGG-DEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 205

Query: 188 --------------------------VQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVE 247
                                      + +FD+   R +VSW  +I  ++  G +  AVE
Sbjct: 206 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE 265

Query: 248 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMY 307
            F EM    +R +  TLV VL A S LG L LG+ +H Y      +  D  +G+ALIDMY
Sbjct: 266 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAE-DSGIRIDDVLGSALIDMY 325

Query: 308 LKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLV 367
            KC  +  A  VF+ +P  NV+TW+AMI+G A  G+  +A+D F  M+  GV+P +V  +
Sbjct: 326 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 385

Query: 368 GVLNSCANLGVLE-------------------------------IGLVKEAEEIVHKMEI 427
            +L +C++ G++E                                GL+ EAEE +  M I
Sbjct: 386 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 445

Query: 428 RPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKL 463
           +PD     ALLGACR+ GNV++G+ V   L ++ P + G Y+ ++N+Y+S   W + S++
Sbjct: 446 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEM 505

[Close]

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot
Match: Q9FIF7 (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-68
Identity = 160/498 (32.13%), Postives = 265/498 (53.21%), Query Frame = 0


Query: 13  LHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72
           L SCK+++H+  IH   I+T       ++ +LI + S+  S    + +       S+ + 
Sbjct: 36  LRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDV------FSYVSN 95

Query: 73  FRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKALARTRGIREGQQI 132
             + L  A++     +  +   +   + M+   + PD + +  VLKA      ++  ++I
Sbjct: 96  PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREI 155

Query: 133 HARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGL 192
           HA+ +K G  G +  V   +M +Y   G + + +K+FDE P RD V+ T++I  +++ G 
Sbjct: 156 HAQVLKLGF-GSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGF 215

Query: 193 -------------------------------YSRAVEAFMEMCDLRLRADGRTLVVVLSA 252
                                           ++A+E F EM    + A+  T V VLSA
Sbjct: 216 IKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSA 275

Query: 253 CSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVT 312
           CS+LG L LG+ VHS++     M    FVGNALI+MY +C D+N A +VF  M  ++V++
Sbjct: 276 CSDLGALELGRWVHSFVENQ-RMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVIS 335

Query: 313 WNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGL------- 372
           +N MISGLA  G   EA++ FR M N+G +P++VTLV +LN+C++ G+L+IGL       
Sbjct: 336 YNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMK 395

Query: 373 ------------------------VKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIG 432
                                   ++EA   +  + I PD    G LL AC+IHGN+++G
Sbjct: 396 RVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELG 455

Query: 433 ESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGV 449
           E + ++L E +  + GTY+L++NLY+S  +WK+++++R++M+   + K PGCS+IEVD  
Sbjct: 456 EKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQ 515

[Close]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL
Match: A0A1S4DUW1 (pentatricopeptide repeat-containing protein At4g21065 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486837 PE=4 SV=1)

HSP 1 Score: 941.8 bits (2433), Expect = 1.1e-270
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA 360

Query: 361 CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP 420
           CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP
Sbjct: 361 CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP 420

Query: 421 GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 472
           GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI
Sbjct: 421 GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 471

[Close]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL
Match: A0A1S4DVM9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486837 PE=4 SV=1)

HSP 1 Score: 909.1 bits (2348), Expect = 7.9e-261
Identity = 471/545 (86.42%), Postives = 471/545 (86.42%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI---------------------------- 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI                            
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIALHGEANWAFQVFSEMFRVGIEPNEVTF 360

Query: 361 ----------------------------------------------GLVKEAEEIVHKME 420
                                                         GLVKEAEEIVHKME
Sbjct: 361 LGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKME 420

Query: 421 IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK 472
           IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK
Sbjct: 421 IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK 480

[Close]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL
Match: A0A5A7UKB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006110 PE=4 SV=1)

HSP 1 Score: 886.7 bits (2290), Expect = 4.2e-254
Identity = 471/603 (78.11%), Postives = 471/603 (78.11%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI---------------------------- 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI                            
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADEFVGNALLDMYA 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 KCGSIDEAFRVFESMKKRDVYSYTAMIVGLALHGEANWAFQVFSEMFRVGIEPNEVTFLG 420

Query: 421 --------------------------------------------GLVKEAEEIVHKMEIR 472
                                                       GLVKEAEEIVHKMEIR
Sbjct: 421 LLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKMEIR 480

[Close]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL
Match: A0A6J1G7N7 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451544 PE=4 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 1.0e-196
Identity = 386/610 (63.28%), Postives = 411/610 (67.38%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPN--LIPKLIFLSSSSSSSPDLF 60
           MNS EL L PHSL+SC S++HLKQ+H VAIKTPSLSL N  L PKLI L SSSS SPDLF
Sbjct: 1   MNSQELRLLPHSLNSCTSIAHLKQLHAVAIKTPSLSLHNQLLFPKLISL-SSSSPSPDLF 60

Query: 61  YIRSILLTHSHDAQFRLNLCNAIVRSI-------SRNSTNLTPMEFLNEMLLIGLEPDGF 120
           YIRSILLT S DAQFRLNLCNA +  I       S NST L  MEFL EMLLIG++PDGF
Sbjct: 61  YIRSILLTSSADAQFRLNLCNAFIHRISANSNGESTNSTGLRAMEFLREMLLIGVQPDGF 120

Query: 121 TLPLVLKALARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDE 180
           TLP VLKALAR + IREGQQIHA SIK G+V  NVYV NTLMRLYSVCGSI  VQK+F E
Sbjct: 121 TLPHVLKALARIQRIREGQQIHAHSIKIGLVRFNVYVCNTLMRLYSVCGSIDAVQKLFGE 180

Query: 181 CPHRDLVSWTILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLG 240
           CPHRDLVSWT LIQAFTKAGLY +AV AFMEMCDL+LRADGRTLVVVLSACSNLGDLNLG
Sbjct: 181 CPHRDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTLVVVLSACSNLGDLNLG 240

Query: 241 QKVHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAY 300
           +KVHSYI +YID+NADVFVGNAL+DMYLKCDD NSA KVFDEMPVRNVVTWNAMI GLAY
Sbjct: 241 RKVHSYIHHYIDVNADVFVGNALLDMYLKCDDSNSAYKVFDEMPVRNVVTWNAMILGLAY 300

Query: 301 QGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI------------------- 360
           QGRY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE+                   
Sbjct: 301 QGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELGKWVHAYMRRNHILADKFV 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 GNALLDMYAKCGRIDEAFRVFEGMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGV 420

Query: 421 -----------------------------------------------------GLVKEAE 470
                                                                GLVKEAE
Sbjct: 421 EPNEVTFLGLLMACSHSGLVSDGKKCFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAE 480

[Close]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL
Match: A0A6J1I3M1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470240 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 1.6e-189
Identity = 373/607 (61.45%), Postives = 400/607 (65.90%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNS EL L PHSL+SC S++HLKQ+H VAIKTPSLSL N       +S SSSSSPDLFYI
Sbjct: 1   MNSQELLLLPHSLNSCTSIAHLKQLHAVAIKTPSLSLHNQFLFRKLISLSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSI-------SRNSTNLTPMEFLNEMLLIGLEPDGFTL 120
           RSILLT   DAQFRLNLCNA +  I       S NST L  MEFL EMLLIG++PDGFTL
Sbjct: 61  RSILLTSLADAQFRLNLCNAFIHRISANSNGESTNSTGLRAMEFLREMLLIGVQPDGFTL 120

Query: 121 PLVLKALARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECP 180
           P VLKALAR + IREGQQIHA SIK G+V  NVYV NTLMRLYSVCGSI  VQK+F E P
Sbjct: 121 PHVLKALARVQRIREGQQIHAHSIKIGLVRFNVYVCNTLMRLYSVCGSIDAVQKLFGEYP 180

Query: 181 HRDLVSWTILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQK 240
           H DLVSWT LIQAFTKAGLY +AV AFMEMCDL+LRADGRTLVVVLSACSNLGDLNLG+K
Sbjct: 181 HPDLVSWTTLIQAFTKAGLYRKAVGAFMEMCDLKLRADGRTLVVVLSACSNLGDLNLGRK 240

Query: 241 VHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQG 300
           +HSYI +YID+N DVFVGNAL+DMYLKCDD NSA KVFDEMPVRNVVTWNAMI GLAYQG
Sbjct: 241 MHSYIHHYIDVNVDVFVGNALLDMYLKCDDSNSAYKVFDEMPVRNVVTWNAMILGLAYQG 300

Query: 301 RYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI--------------------- 360
           RY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE+                     
Sbjct: 301 RYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELGRWVHAYMRRNYILADKFVGN 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 ALLDMYAKCGGIDEAFRVFESMKRRDVYSYTAMIVGLALHGEANWAFQVFSRMLREGVEP 420

Query: 421 ---------------------------------------------------GLVKEAEEI 469
                                                              GLVKEAEEI
Sbjct: 421 NEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEHYGCMIDLLGRAGLVKEAEEI 480

[Close]

BLAST of IVF0017272.1 vs. NCBI nr
Match: XP_016899771.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21065 isoform X2 [Cucumis melo])

HSP 1 Score: 940 bits (2430), Expect = 0.0
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLGA 360

Query: 361 CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP 420
           CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP
Sbjct: 361 CRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTP 420

Query: 421 GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 471
           GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI
Sbjct: 421 GCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 471

[Close]

BLAST of IVF0017272.1 vs. NCBI nr
Match: XP_016899770.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 907 bits (2345), Expect = 0.0
Identity = 471/545 (86.42%), Postives = 471/545 (86.42%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI---------------------------- 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI                            
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIALHGEANWAFQVFSEMFRVGIEPNEVTF 360

Query: 361 ----------------------------------------------GLVKEAEEIVHKME 420
                                                         GLVKEAEEIVHKME
Sbjct: 361 LGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKME 420

Query: 421 IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK 471
           IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK
Sbjct: 421 IRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASK 480

[Close]

BLAST of IVF0017272.1 vs. NCBI nr
Match: KAA0053939.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25465.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 885 bits (2287), Expect = 0.0
Identity = 471/603 (78.11%), Postives = 471/603 (78.11%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
           MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI
Sbjct: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYI 60

Query: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120
           RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL
Sbjct: 61  RSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKAL 120

Query: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180
           ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW
Sbjct: 121 ARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSW 180

Query: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240
           TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY
Sbjct: 181 TILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRY 240

Query: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300
           YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD
Sbjct: 241 YIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALD 300

Query: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG--------------------------- 360
           TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG                           
Sbjct: 301 TFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADEFVGNALLDMYA 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 KCGSIDEAFRVFESMKKRDVYSYTAMIVGLALHGEANWAFQVFSEMFRVGIEPNEVTFLG 420

Query: 421 ---------------------------------------------LVKEAEEIVHKMEIR 471
                                                        LVKEAEEIVHKMEIR
Sbjct: 421 LLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKMEIR 480

[Close]

BLAST of IVF0017272.1 vs. NCBI nr
Match: XP_011652147.2 (pentatricopeptide repeat-containing protein At4g21065 isoform X3 [Cucumis sativus])

HSP 1 Score: 877 bits (2266), Expect = 0.0
Identity = 437/472 (92.58%), Postives = 457/472 (96.82%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSS-PDLFY 60
           MNSL+LHLF HSL+SCKS+SHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSS PDLFY
Sbjct: 1   MNSLQLHLFSHSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSSPDLFY 60

Query: 61  IRSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKA 120
           IRSILLTHSHDAQF L+LCNAI+RSISRNS NL+PMEFLNEML++GLEPDGFT+PLVLKA
Sbjct: 61  IRSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKA 120

Query: 121 LARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVS 180
           LA  +GIREGQQIHARSIKTGMVG NVYV+NTLMRLYSVCGSIHDVQKVFDECPHRDLVS
Sbjct: 121 LALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVS 180

Query: 181 WTILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR 240
           WT LIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR
Sbjct: 181 WTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR 240

Query: 241 YYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREAL 300
           +YIDM ADVFVGNAL+DMYLKCDDLNSA KVFDEMPV+NVVTWNAMISGLAYQGRYREAL
Sbjct: 241 HYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREAL 300

Query: 301 DTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIVHKMEIRPDVFACGALLG 360
           DTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEI+HKMEIRPDVFACGALLG
Sbjct: 301 DTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGLVKEAEEIIHKMEIRPDVFACGALLG 360

Query: 361 ACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKT 420
           ACRIHGNVDIGESVMQKLTE+DPDE+GTYILMTNLYSSVHRWKDA K+RKTMK KKMRKT
Sbjct: 361 ACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKT 420

Query: 421 PGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 471
           PGCS IEVDGVVHEFRKGDKSHPRSKVIY VLEGIATHLKSYGI EHSTFCI
Sbjct: 421 PGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI 472

[Close]

BLAST of IVF0017272.1 vs. NCBI nr
Match: XP_031737802.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 835 bits (2156), Expect = 8.35e-302
Identity = 437/571 (76.53%), Postives = 457/571 (80.04%), Query Frame = 0


Query: 1   MNSLELHLFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSS-PDLFY 60
           MNSL+LHLF HSL+SCKS+SHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSS PDLFY
Sbjct: 1   MNSLQLHLFSHSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSSPDLFY 60

Query: 61  IRSILLTHSHDAQFRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKA 120
           IRSILLTHSHDAQF L+LCNAI+RSISRNS NL+PMEFLNEML++GLEPDGFT+PLVLKA
Sbjct: 61  IRSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKA 120

Query: 121 LARTRGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVS 180
           LA  +GIREGQQIHARSIKTGMVG NVYV+NTLMRLYSVCGSIHDVQKVFDECPHRDLVS
Sbjct: 121 LALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVS 180

Query: 181 WTILIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR 240
           WT LIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR
Sbjct: 181 WTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIR 240

Query: 241 YYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREAL 300
           +YIDM ADVFVGNAL+DMYLKCDDLNSA KVFDEMPV+NVVTWNAMISGLAYQGRYREAL
Sbjct: 241 HYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREAL 300

Query: 301 DTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI--------------------------- 360
           DTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEI                           
Sbjct: 301 DTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIDEAFRVFESMKRRDVYSYTAMIFGLAL 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAE 420

Query: 421 ------------GLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEI 471
                       GLVKEAEEI+HKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE+
Sbjct: 421 HYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEL 480

[Close]

BLAST of IVF0017272.1 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 282.7 bits (722), Expect = 5.3e-76
Identity = 160/485 (32.99%), Postives = 264/485 (54.43%), Query Frame = 0


Query: 14  HSCKSLSHLKQIHGVAIK-TPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 73
           +   S++ L+QIH  +I+   S+S   L   LIF   S  S P + Y   +      +  
Sbjct: 25  YGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVF--SKIEKP 84

Query: 74  FRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGL-EPDGFTLPLVLKALARTRGIREGQQ 133
             + + N ++R  +    +++      EM + GL EPD  T P ++KA+     +R G+ 
Sbjct: 85  INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGET 144

Query: 134 IHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAG 193
           IH+  I++G  G  +YV N+L+ LY+ CG +    KVFD+ P +DLV+W  +I  F + G
Sbjct: 145 IHSVVIRSGF-GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENG 204

Query: 194 LYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVG 253
               A+  + EM    ++ DG T+V +LSAC+ +G L LG++VH Y+   + +  ++   
Sbjct: 205 KPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLHSS 264

Query: 254 NALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQN-KGV 313
           N L+D+Y +C  +  A  +FDEM  +N V+W ++I GLA  G  +EA++ F+ M++ +G+
Sbjct: 265 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 324

Query: 314 KPDEVTLVGVLNSCANLGVLE-------------------------------IGLVKEAE 373
            P E+T VG+L +C++ G+++                                G VK+A 
Sbjct: 325 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 384

Query: 374 EIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVH 433
           E +  M ++P+V     LLGAC +HG+ D+ E    ++ +++P+  G Y+L++N+Y+S  
Sbjct: 385 EYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQ 444

Query: 434 RWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLK 465
           RW D  K+RK M    ++K PG S +EV   VHEF  GDKSHP+S  IY  L+ +   L+
Sbjct: 445 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 504

[Close]

BLAST of IVF0017272.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 280.4 bits (716), Expect = 2.6e-75
Identity = 148/419 (35.32%), Postives = 239/419 (57.04%), Query Frame = 0


Query: 79  NAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKALARTRGIREGQQIHARSIK 138
           NA++   +        +E   +M+   + PD  T+  V+ A A++  I  G+Q+H     
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294

Query: 139 TGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVE 198
            G  G N+ + N L+ LYS CG +     +F+  P++D++SW  LI  +T   LY  A+ 
Sbjct: 295 HGF-GSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 354

Query: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI--RYYIDMNADVFVGNALID 258
            F EM       +  T++ +L AC++LG +++G+ +H YI  R     NA   +  +LID
Sbjct: 355 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNAS-SLRTSLID 414

Query: 259 MYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVT 318
           MY KC D+ +A++VF+ +  +++ +WNAMI G A  GR   + D F  M+  G++PD++T
Sbjct: 415 MYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDIT 474

Query: 319 LVGVLNSCANLGVLEI-------------------------------GLVKEAEEIVHKM 378
            VG+L++C++ G+L++                               GL KEAEE+++ M
Sbjct: 475 FVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMM 534

Query: 379 EIRPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDAS 438
           E+ PD     +LL AC++HGNV++GES  + L +I+P+  G+Y+L++N+Y+S  RW + +
Sbjct: 535 EMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVA 594

Query: 439 KLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIV 465
           K R  +  K M+K PGCSSIE+D VVHEF  GDK HPR++ IY +LE +   L+  G V
Sbjct: 595 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

[Close]

BLAST of IVF0017272.1 vs. TAIR 10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 1.4e-71
Identity = 178/496 (35.89%), Postives = 252/496 (50.81%), Query Frame = 0


Query: 15  SCKSLSHLKQIHGVAIKTPSLSLPN---LIPKLIFLSSSSSSSPDLFYIRSILLTHSHDA 74
           +C  +S LKQ+H   ++T     P    L  K++ LSSS S     F +   +  HS   
Sbjct: 57  TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHS--- 116

Query: 75  QFRLN-LCNAIVRSISRNSTNLTPMEFLNEMLLIG-LEPDGFTLPLVLKALARTRGIREG 134
            F  N L  A    +SR            +ML  G   PD  T P VLKA A   G  EG
Sbjct: 117 SFMWNTLIRACAHDVSRKE---EAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEG 176

Query: 135 QQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTK 194
           +Q+H + +K G  G +VYV N L+ LY  CG +   +KVFDE P R LVSW  +I A  +
Sbjct: 177 KQVHCQIVKHGFGG-DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 236

Query: 195 AGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI--RYYIDMNAD 254
            G Y  A++ F EM       DG T+  VLSAC+ LG L+LG   H+++  +  +D+  D
Sbjct: 237 FGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMD 296

Query: 255 VFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQN 314
           V V N+LI+MY KC  L  A +VF  M  R++ +WNAMI G A  GR  EA++ F  M +
Sbjct: 297 VLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVD 356

Query: 315 K--GVKPDEVTLVGVLNSCANLG-------------------------------VLEIGL 374
           K   V+P+ VT VG+L +C + G                               +   G 
Sbjct: 357 KRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGY 416

Query: 375 VKEAEEIVHKMEIRPDVFACGALLGACRIHG-NVDIGESVMQKLTEIDPDED-------G 434
           + EA ++V  M ++PD     +LL AC   G +V++ E + + +     D +       G
Sbjct: 417 ITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSG 476

Query: 435 TYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKV 463
            Y+L++ +Y+S  RW D   +RK M    +RK PGCSSIE++G+ HEF  GD SHP++K 
Sbjct: 477 AYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQ 536

[Close]

BLAST of IVF0017272.1 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 263.5 bits (672), Expect = 3.3e-70
Identity = 175/535 (32.71%), Postives = 269/535 (50.28%), Query Frame = 0


Query: 8   LFPHSLHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLI-FLSSSSSSSPDLFYIRSILLT 67
           LFP  +++C+++  L QIH V IK+  +       +++ F ++S     DL Y   I   
Sbjct: 26  LFP-QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF-- 85

Query: 68  HSHDAQFRLNLCNAIVRSISRNSTN--LTPMEFLNEMLLIG-LEPDGFTLPLVLKALART 127
            +   Q      N I+R  S +  +  L  +    EM+    +EP+ FT P VLKA A+T
Sbjct: 86  -NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 145

Query: 128 RGIREGQQIHARSIKTGMVGLNVYVTNTLMRLYSVCGSIHD------------------- 187
             I+EG+QIH  ++K G  G + +V + L+R+Y +CG + D                   
Sbjct: 146 GKIQEGKQIHGLALKYGFGG-DEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 205

Query: 188 --------------------------VQKVFDECPHRDLVSWTILIQAFTKAGLYSRAVE 247
                                      + +FD+   R +VSW  +I  ++  G +  AVE
Sbjct: 206 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE 265

Query: 248 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMY 307
            F EM    +R +  TLV VL A S LG L LG+ +H Y      +  D  +G+ALIDMY
Sbjct: 266 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAE-DSGIRIDDVLGSALIDMY 325

Query: 308 LKCDDLNSANKVFDEMPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLV 367
            KC  +  A  VF+ +P  NV+TW+AMI+G A  G+  +A+D F  M+  GV+P +V  +
Sbjct: 326 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 385

Query: 368 GVLNSCANLGVLE-------------------------------IGLVKEAEEIVHKMEI 427
            +L +C++ G++E                                GL+ EAEE +  M I
Sbjct: 386 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 445

Query: 428 RPDVFACGALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKL 463
           +PD     ALLGACR+ GNV++G+ V   L ++ P + G Y+ ++N+Y+S   W + S++
Sbjct: 446 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEM 505

[Close]

BLAST of IVF0017272.1 vs. TAIR 10
Match: AT5G59200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 260.8 bits (665), Expect = 2.2e-69
Identity = 160/498 (32.13%), Postives = 265/498 (53.21%), Query Frame = 0


Query: 13  LHSCKSLSHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72
           L SCK+++H+  IH   I+T       ++ +LI + S+  S    + +       S+ + 
Sbjct: 36  LRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDV------FSYVSN 95

Query: 73  FRLNLCNAIVRSISRNSTNLTPMEFLNEMLLIGLEPDGFTLPLVLKALARTRGIREGQQI 132
             + L  A++     +  +   +   + M+   + PD + +  VLKA      ++  ++I
Sbjct: 96  PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREI 155

Query: 133 HARSIKTGMVGLNVYVTNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTILIQAFTKAGL 192
           HA+ +K G  G +  V   +M +Y   G + + +K+FDE P RD V+ T++I  +++ G 
Sbjct: 156 HAQVLKLGF-GSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGF 215

Query: 193 -------------------------------YSRAVEAFMEMCDLRLRADGRTLVVVLSA 252
                                           ++A+E F EM    + A+  T V VLSA
Sbjct: 216 IKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSA 275

Query: 253 CSNLGDLNLGQKVHSYIRYYIDMNADVFVGNALIDMYLKCDDLNSANKVFDEMPVRNVVT 312
           CS+LG L LG+ VHS++     M    FVGNALI+MY +C D+N A +VF  M  ++V++
Sbjct: 276 CSDLGALELGRWVHSFVENQ-RMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVIS 335

Query: 313 WNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIGL------- 372
           +N MISGLA  G   EA++ FR M N+G +P++VTLV +LN+C++ G+L+IGL       
Sbjct: 336 YNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMK 395

Query: 373 ------------------------VKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIG 432
                                   ++EA   +  + I PD    G LL AC+IHGN+++G
Sbjct: 396 RVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELG 455

Query: 433 ESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGV 449
           E + ++L E +  + GTY+L++NLY+S  +WK+++++R++M+   + K PGCS+IEVD  
Sbjct: 456 EKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQ 515

The following BLAST results are available for this feature:

BLAST of IVF0017272.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MQA3	7.5e-75	32.99	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	3.7e-74	35.32	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q0WQW5	1.9e-70	35.89	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
Q9FI80	4.7e-69	32.71	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
Q9FIF7	3.0e-68	32.13	Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS...	[more]

BLAST of IVF0017272.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUW1	1.1e-270	100.00	pentatricopeptide repeat-containing protein At4g21065 isoform X2 OS=Cucumis melo...	[more]
A0A1S4DVM9	7.9e-261	86.42	pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 ...	[more]
A0A5A7UKB6	4.2e-254	78.11	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1G7N7	1.0e-196	63.28	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]
A0A6J1I3M1	1.6e-189	61.45	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor...	[more]

BLAST of IVF0017272.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899771.1	0.0	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21065 isoform X2 [Cuc...	[more]
XP_016899770.1	0.0	86.42	PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic ...	[more]
KAA0053939.1	0.0	78.11	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25465...	[more]
XP_011652147.2	0.0	92.58	pentatricopeptide repeat-containing protein At4g21065 isoform X3 [Cucumis sativu...	[more]
XP_031737802.1	8.35e-302	76.53	pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 ...	[more]

BLAST of IVF0017272.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21065.1	5.3e-76	32.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	2.6e-75	35.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G59720.1	1.4e-71	35.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	3.3e-70	32.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G59200.1	2.2e-69	32.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 178..205 e-value: 3.0E-5 score: 24.0 coord: 150..172 e-value: 0.92 score: 9.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 178..209 e-value: 2.2E-4 score: 19.2 coord: 280..314 e-value: 3.2E-9 score: 34.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 277..326 e-value: 6.9E-14 score: 51.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 176..210 score: 9.722731
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 278..312 score: 13.26323
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 243..330 e-value: 4.8E-23 score: 84.0 coord: 331..445 e-value: 3.8E-9 score: 38.4 coord: 83..242 e-value: 1.9E-24 score: 88.6
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 333..470
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 14..333
None	No IPR available	PANTHER	PTHR47928:SF107	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 333..470 coord: 14..333

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0017272	IVF0017272	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017272.1-five_prime_utr	IVF0017272.1-five_prime_utr-chr04:28092755..28093227	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017272.1-exon	IVF0017272.1-exon-chr04:28092755..28094224	exon
IVF0017272.1-exon	IVF0017272.1-exon-chr04:28094621..28095158	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017272.1-cds	IVF0017272.1-cds-chr04:28093228..28094224	CDS
IVF0017272.1-cds	IVF0017272.1-cds-chr04:28094621..28095039	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0017272.1-three_prime_utr	IVF0017272.1-three_prime_utr-chr04:28095040..28095158	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0017272.1	IVF0017272.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding