IVF0016586.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0016586.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 11659025 .. 11659556 (+)
Sequence length	429
RNA-Seq Expression	IVF0016586.1
Synteny	IVF0016586.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCAAACTGGTTTCAAAACTGGTGGATGTATTTTGGACTCTCCGAGGAAATATTTCCGGTAGAAGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

mRNA sequence

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

Coding sequence (CDS)

ATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAAGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCGTCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTACATTGTATTCTGGCTCCAAGCTTACAACCATTCTTGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCGTCACCACTTTCGAAGACGTTTAG

Protein sequence

MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSCSTFVPPFPTKYLFVTTFEDV

Homology

[Close]

BLAST of IVF0016586.1 vs. ExPASy TrEMBL
Match: A0A0A0LWK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 125/144 (86.81%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSV EVC Q+FPHGFNFLPEDLSKTRTFYE+ILVDSKSAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIF+VLTPSYWKQGMFVG++FS PFKPPSYNYRDYTKAWYI+FWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 121 SC--STFVPPFPTKYLFVTTFEDV 143
           SC  STF+P  PTKYL V++ +DV
Sbjct: 121 SCRSSTFIPSLPTKYLLVSSLKDV 144

[Close]

BLAST of IVF0016586.1 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0016586.1 vs. ExPASy TrEMBL
Match: A0A5D3C4Q3 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00040 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0016586.1 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0016586.1 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.4e-66
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPKFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

Query: 121 S 122
           S
Sbjct: 220 S 220

[Close]

BLAST of IVF0016586.1 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 2.55e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0016586.1 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 2.55e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0016586.1 vs. NCBI nr
Match: KAA0041673.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK06294.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 4.12e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0016586.1 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 1.02e-82
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEP+FDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPKFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 219

[Close]

BLAST of IVF0016586.1 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (660), Expect = 1.45e-82
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN
Sbjct: 100 MVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKN 159

Query: 61  DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 120
           DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWL AYNH
Sbjct: 160 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNH 219

The following BLAST results are available for this feature:

BLAST of IVF0016586.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016586.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWK6	6.6e-70	86.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385050 PE=4 SV=1	[more]
A0A5A7UVN1	1.5e-66	100.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3C4Q3	1.5e-66	100.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6D1	1.5e-66	100.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VIK9	4.4e-66	99.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0016586.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063832.1	2.55e-83	100.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	2.55e-83	100.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0041673.1	4.12e-83	100.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK06294.1 Retrotransp...	[more]
KAA0068172.1	1.02e-82	99.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28077.1	1.45e-82	99.17	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0016586.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 4..125
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 4..125

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0016586	IVF0016586	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016586.1-exon	IVF0016586.1-exon-chr04:11659025..11659389	exon
IVF0016586.1-exon	IVF0016586.1-exon-chr04:11659493..11659556	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016586.1-cds	IVF0016586.1-cds-chr04:11659025..11659389	CDS
IVF0016586.1-cds	IVF0016586.1-cds-chr04:11659493..11659556	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0016586.1	IVF0016586.1-protein	polypeptide