IVF0016205.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0016205.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr04: 7905329 .. 7907086 (+)
Sequence length	1641
RNA-Seq Expression	IVF0016205.2
Synteny	IVF0016205.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGAGGTAAACCTCGAAAGCACCCTGATGCAGAAGCTAGTAACGCTGCTAAAGAAGCAGCGATGGGAAGTGGGGAGTCTGATGCAGAATCTAGTCGCCCTCGTGTTGAGGAAAACGTGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAGTTTCAGGGATTAGATCGGCACAATCAGACCCTGAAAAGAAGTATGGGTTTGAGCGATTGAAAGCTTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCACCGATGTTGAAGCATGGCTTACTTTAATTGAAAAGTGCTTCAGAGTAACAAGATATCTGGAGGATAGGAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGACGCTGAAGATTGGTGGCGCATGGAAGAAAGTAGACGAAGAACTACAGGTGATATGAGTTGAGACGAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTCGCGATGCAAAACATAATGAGTTTGTAAGGCTCACTCAAGGGACAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGCCACTAGGGTGATTGTGGATGAAGGGGAAAGATGTAAGAGATTCGAAGAGGGGTTACGAGAGGAAATTCGTACTCCTGTAACAGCTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTAGAGGTAGCATTAAGGGTAGAAAAAAGTTTAAATGAAAGGAAGCGAGAAAGAGAGGCTTCCAAGAATTTACGTACATTCAGCTCGTCTATGCATCGAAATCGACCAGGTAAAGAAAGAAGTGGAAGATTTGTTCCCAGGGTGTCTAGCAGAGGAAGTTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGAGATCAGGCGGAGGAGCCCAGAGATCAAGTGACTCTAGTCATACCATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAAATAGGGTTGTGTCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCTGTCAGCTAGGACATTATCGTAGAGATTGTCCACATCTGATACCAGGGAGTAATACTATCTTGAAGACCACTTCTCAGACAGTAATCCAGCAGCTAAGAACCACAGGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACTAGTGGGTCGCTCCCGTCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACATTGTGACTGGTACGTCATCTATTTTCAATGAATCTGCGCATGTCCTAATGGATCCTGGTACAACACATTTTTTTGTCTCTATTATGTTTGTAGTTGGGGTTGTTAAAGAGTTAGAAAGTCTAACTGAGGAATTATTGATAAGTACACCTGTAGGAGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGATTCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAAGGAAGAGTGAAATCATTTTCCGCGGTGAAAGAAAGATACTTCCCACCTATGTGATCTCTGCTTTGAAGGCCAGTAAATTGTTAAGGAAGGGTTGTACGGCTTACCTAGCACATGTGATGGATACACAGATTAGTAAGCTAAACCTTGAAGATATACCAGGTAAGAGAATTCCTAGATGTATTTCCTGA

mRNA sequence

ATGCCTCGAGGTAAACCTCGAAAGCACCCTGATGCAGAAGCTAGTAACGCTGCTAAAGAAGCAGCGATGGGAAGTGGGGAGTCTGATGCAGAATCTAGTCGCCCTCGTGTTGAGGAAAACGTGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAGTTTCAGGGATTAGATCGGCACAATCAGACCCTGAAAAGAAGTATGGGTTTGAGCGATTGAAAGCTTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCACCGATGTTGAAGCATGGCTTACTTTAATTGAAAAGTGCTTCAGAGTAACAAGATATCTGGAGGATAGGAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGACGCTGAAGATTGGTGGCGCATGGAAGAAAACGAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTCGCGATGCAAAACATAATGAGTTTGTAAGGCTCACTCAAGGGACAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGCCACTAGGGTGATTGTGGATGAAGGGGAAAGATGTAAGAGATTCGAAGAGGGGTTACGAGAGGAAATTCGTACTCCTGTAACAGCTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTAGAGGTAGCATTAAGGGTAGAAAAAAGTTTAAATGAAAGGAAGCGAGAAAGAGAGGCTTCCAAGAATTTACGTACATTCAGCTCGTCTATGCATCGAAATCGACCAGGTAAAGAAAGAAGTGGAAGATTTGTTCCCAGGGTGTCTAGCAGAGGAAGTTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGAGATCAGGCGGAGGAGCCCAGAGATCAAGTGACTCTAGTCATACCATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAAATAGGGTTGTGTCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCTGTCAGCTAGGACATTATCGTAGAGATTGTCCACATCTGATACCAGGGAGTAATACTATCTTGAAGACCACTTCTCAGACAGTAATCCAGCAGCTAAGAACCACAGGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACTAGTGGGTCGCTCCCGTCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACATTGTGACTGTTGGGGTTGTTAAAGAGTTAGAAAGTCTAACTGAGGAATTATTGATAAGTACACCTGTAGGAGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGATTCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAAGGAAGAGTGAAATCATTTTCCGCGGTGAAAGAAAGATACTTCCCACCTATGTGATCTCTGCTTTGAAGGCCAGTAAATTGTTAAGGAAGGGTTGTACGGCTTACCTAGCACATGTGATGGATACACAGATTAGTAAGCTAAACCTTGAAGATATACCAGGTAAGAGAATTCCTAGATGTATTTCCTGA

Coding sequence (CDS)

ATGCCTCGAGGTAAACCTCGAAAGCACCCTGATGCAGAAGCTAGTAACGCTGCTAAAGAAGCAGCGATGGGAAGTGGGGAGTCTGATGCAGAATCTAGTCGCCCTCGTGTTGAGGAAAACGTGGAAGAACAATTGCTTGATAGATTGGCTCAAAGATTAGTTTCAGGGATTAGATCGGCACAATCAGACCCTGAAAAGAAGTATGGGTTTGAGCGATTGAAAGCTTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCACCGATGTTGAAGCATGGCTTACTTTAATTGAAAAGTGCTTCAGAGTAACAAGATATCTGGAGGATAGGAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGACGCTGAAGATTGGTGGCGCATGGAAGAAAACGAGTTTAAAAAGGCATTCTTTGATAAATTTTATCCACGCTCCTTTCGCGATGCAAAACATAATGAGTTTGTAAGGCTCACTCAAGGGACAATGACTGTTGCGGAATATGAGAAGAAGTATACAGAATTGTCTAAGTATGCCACTAGGGTGATTGTGGATGAAGGGGAAAGATGTAAGAGATTCGAAGAGGGGTTACGAGAGGAAATTCGTACTCCTGTAACAGCTTGTGCAGACTGGAATGATTTCTCTAAGTTAGTAGAGGTAGCATTAAGGGTAGAAAAAAGTTTAAATGAAAGGAAGCGAGAAAGAGAGGCTTCCAAGAATTTACGTACATTCAGCTCGTCTATGCATCGAAATCGACCAGGTAAAGAAAGAAGTGGAAGATTTGTTCCCAGGGTGTCTAGCAGAGGAAGTTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGAGATCAGGCGGAGGAGCCCAGAGATCAAGTGACTCTAGTCATACCATATCTTCTACAGGAGGTTCTCATGTTGCTCGATCAAATAGGGTTGTGTCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCTGTCAGCTAGGACATTATCGTAGAGATTGTCCACATCTGATACCAGGGAGTAATACTATCTTGAAGACCACTTCTCAGACAGTAATCCAGCAGCTAAGAACCACAGGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACTAGTGGGTCGCTCCCGTCAGGAAGGGAAGGTTTTTGCAATGACACAACAAGAGGCAGCAGATGCACCAAACATTGTGACTGTTGGGGTTGTTAAAGAGTTAGAAAGTCTAACTGAGGAATTATTGATAAGTACACCTGTAGGAGATAGTTTTATAGTCAATAGTGTGTACCGGAAATGTAGTATTCTTATTGATGGTGAAACTTTAGAAGTGGATTTGATTCCGTTAAACATTCAGGAGTTTGATGTTATCTTGGGAATGGATTTTCTATCTAATCACTATGCCTCCCTAAATTGTCATCAGAAAGAGATTGTTTTTAAACGTCCAAGGAAGAGTGAAATCATTTTCCGCGGTGAAAGAAAGATACTTCCCACCTATGTGATCTCTGCTTTGAAGGCCAGTAAATTGTTAAGGAAGGGTTGTACGGCTTACCTAGCACATGTGATGGATACACAGATTAGTAAGCTAAACCTTGAAGATATACCAGGTAAGAGAATTCCTAGATGTATTTCCTGA

Protein sequence

MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQNDAEDWWRMEENEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKELESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIPGKRIPRCIS

Homology

[Close]

BLAST of IVF0016205.2 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 979.2 bits (2530), Expect = 7.2e-282
Identity = 518/551 (94.01%), Postives = 520/551 (94.37%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEE-----------NEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           NDAEDWWRMEE           +EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE
Sbjct: 121 NDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN
Sbjct: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA
Sbjct: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT
Sbjct: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT       
Sbjct: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT----GTS 420

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
               E   +    GDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY
Sbjct: 421 SIFNESAHVLMDPGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540
           ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS
Sbjct: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540

[Close]

BLAST of IVF0016205.2 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 919.8 bits (2376), Expect = 5.2e-264
Identity = 491/537 (91.43%), Postives = 493/537 (91.81%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEENEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYEKKYTELSKYAT 180
           NDAEDWWRMEE+                        R T GTMTVAEYEKKYTELSKYAT
Sbjct: 121 NDAEDWWRMEESR-----------------------RRTTGTMTVAEYEKKYTELSKYAT 180

Query: 181 RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN 240
           RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN
Sbjct: 181 RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN 240

Query: 241 LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS 300
           LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS
Sbjct: 241 LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS 300

Query: 301 STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT 360
           STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT
Sbjct: 301 STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT 360

Query: 361 TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKELESLTEELLIST 420
           TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT           E   +  
Sbjct: 361 TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT----GTSSIFNESAHVLM 420

Query: 421 PVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV 480
             GDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV
Sbjct: 421 DPGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV 480

Query: 481 FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP 538
           FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP
Sbjct: 481 FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP 510

[Close]

BLAST of IVF0016205.2 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 831.6 bits (2147), Expect = 1.9e-237
Identity = 447/548 (81.57%), Postives = 467/548 (85.22%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MP+G+PRKHPDAEASNAA+EAAMGSGE                               S 
Sbjct: 20  MPQGRPRKHPDAEASNAAREAAMGSGE-------------------------------ST 79

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYG ERLKALGATTFAGTTNP D EAWLTLIEKCFRVTR  EDRKVELAAFLLQ
Sbjct: 80  QSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQ 139

Query: 121 NDAEDWWRMEE-----------NEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWWRMEE           NEFKKAFFDKFYPRSFRDAK NEF+RLTQG+MT+AEYE
Sbjct: 140 NGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTIAEYE 199

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELS YATRVI DE ERCKRFEEGLREEIRTPVTACADWNDFSKLVE ALRVEKSLN
Sbjct: 200 KKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRVEKSLN 259

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERK+ERE SKN+ TFSSSMHRNR GKERSGRFVP VSSRG+FKSQY+GSSFSKS S GGA
Sbjct: 260 ERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGA 319

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSS SSH ISSTGGSH+ARS+RVVSES KSSVCYNC Q GHYRRDCPHLIPG NTILKT
Sbjct: 320 QRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKT 379

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTV QQ R T TSGEGSSGGKQKG VGRSRQEGKVFAMTQQEAADAPN+VTVG+ KEL
Sbjct: 380 TSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPNVVTVGIDKEL 439

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
           ESLTEELLIST +GDSFIVNSVYRKCSILIDGETLEVDL PLNIQEFDVILGMDFLSNHY
Sbjct: 440 ESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVILGMDFLSNHY 499

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 538
           ASLNCHQKEIVFKRP  SEI+FRG+RKIL T VISALKASKLLRKGCT YL +V+DTQ+S
Sbjct: 500 ASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVYLVNVIDTQVS 536

[Close]

BLAST of IVF0016205.2 vs. ExPASy TrEMBL
Match: A0A5D3DS52 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00670 PE=4 SV=1)

HSP 1 Score: 674.1 bits (1738), Expect = 4.9e-190
Identity = 378/548 (68.98%), Postives = 399/548 (72.81%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRG+PRKHPDA+ASNAA+EAAMGSGESD  S                            
Sbjct: 79  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSK--------------------------- 138

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
              PEKKYG ERLK LGATTF GT NPTD EAWL L EKCF+VTRY EDRKVELAAFLL+
Sbjct: 139 ---PEKKYGIERLKVLGATTFVGTKNPTDAEAWLILFEKCFKVTRYPEDRKVELAAFLLE 198

Query: 121 NDAEDWWRMEE-----------NEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWW MEE           +EFK AFFDKFYPRSFRDAKHNEF+RLTQG+MT+AEYE
Sbjct: 199 NGAEDWWCMEESRQRTTDDISWDEFKTAFFDKFYPRSFRDAKHNEFLRLTQGSMTIAEYE 258

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELSKYAT+VI DE ERCK  EEGL                                
Sbjct: 259 KKYTELSKYATKVIEDEVERCKSLEEGL-------------------------------- 318

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
                                                  G+FKSQYSGSSFSKS  GG A
Sbjct: 319 ---------------------------------------GNFKSQYSGSSFSKSGLGGRA 378

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSS S+H ISST GSH+ARS+RV+S+SGKSSVCYNC QLGHYRRDCPHLIPG NTILKT
Sbjct: 379 QRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGHYRRDCPHLIPGGNTILKT 438

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTV QQLRTT TSGEGSSG KQ GLVGRSRQEGKV AMTQQEAADAPN+VT+GV KEL
Sbjct: 439 TSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQQEAADAPNVVTIGVDKEL 498

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
           ESLTEELLIST VGDSFIVNSVYRKCSILID ETLEVDLIPLNIQEFDVILGMDFLSNHY
Sbjct: 499 ESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPLNIQEFDVILGMDFLSNHY 525

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 538
           ASLNCH+KEIVFKRPRKSEIIF G+RKILPTYVIS LKASKLLRKGCTAYLA+VMDTQIS
Sbjct: 559 ASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKLLRKGCTAYLANVMDTQIS 525

[Close]

BLAST of IVF0016205.2 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 671.4 bits (1731), Expect = 3.2e-189
Identity = 380/547 (69.47%), Postives = 398/547 (72.76%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MP+G+PRKHPDAEASNAA+EAAMGSGESDAESSRP VE NVEEQLLDRLAQRL+ GIR A
Sbjct: 1   MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSD EKKYG ERLKALGATTF GTTNP D E WLTLIEKCF+VTR  EDRKVELAAFLLQ
Sbjct: 61  QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEEN-----------EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWW MEE+           EFKKAFFDKFYP SF DAKHN                
Sbjct: 121 NGAEDWWHMEESRRRTTGDMIWGEFKKAFFDKFYPPSFHDAKHN---------------- 180

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
                      +VI D+ ERCKRFEEGLREEIRTPVTACADWNDFSKLV  ALRV+KSLN
Sbjct: 181 -----------KVIEDKVERCKRFEEGLREEIRTPVTACADWNDFSKLVNAALRVQKSLN 240

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERKRERE SKN+ TFS SMHRNR GK RSGRFVP VSSRG+FKSQY+GSSFSKSRSGGGA
Sbjct: 241 ERKRERETSKNVHTFSLSMHRNRQGKGRSGRFVPGVSSRGNFKSQYNGSSFSKSRSGGGA 300

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QR S SSH ISSTGGSH+ARS+RVV ESGKSSVCYNC QL HYRRDCPHLIPG       
Sbjct: 301 QRWSGSSHPISSTGGSHIARSDRVVLESGKSSVCYNCGQLEHYRRDCPHLIPG------- 360

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
                                    G +GRSRQEGKVFAMTQQEAADAPN+VT       
Sbjct: 361 -------------------------GPLGRSRQEGKVFAMTQQEAADAPNVVT------- 420

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
                                              EVDLI LNIQ+FDVILGMDFLSNHY
Sbjct: 421 -----------------------------------EVDLISLNIQKFDVILGMDFLSNHY 446

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 537
           ASLNCHQKEIVFKRP KSEIIFRG+RKILPTYVI ALKASKLLRKGCTAYLAHVMDTQIS
Sbjct: 481 ASLNCHQKEIVFKRPGKSEIIFRGDRKILPTYVIFALKASKLLRKGCTAYLAHVMDTQIS 446

[Close]

BLAST of IVF0016205.2 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 981 bits (2537), Expect = 0.0
Identity = 518/551 (94.01%), Postives = 520/551 (94.37%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEEN-----------EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           NDAEDWWRMEE+           EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE
Sbjct: 121 NDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN
Sbjct: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA
Sbjct: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT
Sbjct: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT       
Sbjct: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT----GTS 420

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
               E   +    GDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY
Sbjct: 421 SIFNESAHVLMDPGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540
           ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS
Sbjct: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540

[Close]

BLAST of IVF0016205.2 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 920 bits (2378), Expect = 0.0
Identity = 491/537 (91.43%), Postives = 493/537 (91.81%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEENEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYEKKYTELSKYAT 180
           NDAEDWWRMEE+                        R T GTMTVAEYEKKYTELSKYAT
Sbjct: 121 NDAEDWWRMEESR-----------------------RRTTGTMTVAEYEKKYTELSKYAT 180

Query: 181 RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN 240
           RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN
Sbjct: 181 RVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKN 240

Query: 241 LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS 300
           LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS
Sbjct: 241 LRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTIS 300

Query: 301 STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT 360
           STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT
Sbjct: 301 STGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRT 360

Query: 361 TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKELESLTEELLIST 420
           TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT           E   +  
Sbjct: 361 TGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVT----GTSSIFNESAHVLM 420

Query: 421 PVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV 480
             GDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV
Sbjct: 421 DPGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHYASLNCHQKEIV 480

Query: 481 FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP 537
           FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP
Sbjct: 481 FKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQISKLNLEDIP 510

[Close]

BLAST of IVF0016205.2 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 835 bits (2157), Expect = 3.18e-300
Identity = 448/551 (81.31%), Postives = 468/551 (84.94%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MP+G+PRKHPDAEASNAA+EAAMGSGE                               S 
Sbjct: 20  MPQGRPRKHPDAEASNAAREAAMGSGE-------------------------------ST 79

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSDPEKKYG ERLKALGATTFAGTTNP D EAWLTLIEKCFRVTR  EDRKVELAAFLLQ
Sbjct: 80  QSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQ 139

Query: 121 NDAEDWWRMEE-----------NEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWWRMEE           NEFKKAFFDKFYPRSFRDAK NEF+RLTQG+MT+AEYE
Sbjct: 140 NGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMTIAEYE 199

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELS YATRVI DE ERCKRFEEGLREEIRTPVTACADWNDFSKLVE ALRVEKSLN
Sbjct: 200 KKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRVEKSLN 259

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERK+ERE SKN+ TFSSSMHRNR GKERSGRFVP VSSRG+FKSQY+GSSFSKS S GGA
Sbjct: 260 ERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGA 319

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSS SSH ISSTGGSH+ARS+RVVSES KSSVCYNC Q GHYRRDCPHLIPG NTILKT
Sbjct: 320 QRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKT 379

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTV QQ R T TSGEGSSGGKQKG VGRSRQEGKVFAMTQQEAADAPN+VTVG+ KEL
Sbjct: 380 TSQTVSQQPRITITSGEGSSGGKQKGPVGRSRQEGKVFAMTQQEAADAPNVVTVGIDKEL 439

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
           ESLTEELLIST +GDSFIVNSVYRKCSILIDGETLEVDL PLNIQEFDVILGMDFLSNHY
Sbjct: 440 ESLTEELLISTRIGDSFIVNSVYRKCSILIDGETLEVDLNPLNIQEFDVILGMDFLSNHY 499

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540
           ASLNCHQKEIVFKRP  SEI+FRG+RKIL T VISALKASKLLRKGCT YL +V+DTQ+S
Sbjct: 500 ASLNCHQKEIVFKRPGMSEILFRGDRKILLTCVISALKASKLLRKGCTVYLVNVIDTQVS 539

[Close]

BLAST of IVF0016205.2 vs. NCBI nr
Match: KAA0067055.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 679 bits (1752), Expect = 9.43e-239
Identity = 379/551 (68.78%), Postives = 400/551 (72.60%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MPRG+PRKHPDA+ASNAA+EAAMGSGESD                               
Sbjct: 79  MPRGRPRKHPDAKASNAAREAAMGSGESD------------------------------V 138

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
            S PEKKYG ERLK LGATTF GT NPTD EAWL L EKCF+VTRY EDRKVELAAFLL+
Sbjct: 139 VSKPEKKYGIERLKVLGATTFVGTKNPTDAEAWLILFEKCFKVTRYPEDRKVELAAFLLE 198

Query: 121 NDAEDWWRMEEN-----------EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWW MEE+           EFK AFFDKFYPRSFRDAKHNEF+RLTQG+MT+AEYE
Sbjct: 199 NGAEDWWCMEESRQRTTDDISWDEFKTAFFDKFYPRSFRDAKHNEFLRLTQGSMTIAEYE 258

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
           KKYTELSKYAT+VI DE ERCK  EEGL                                
Sbjct: 259 KKYTELSKYATKVIEDEVERCKSLEEGL-------------------------------- 318

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
                                                  G+FKSQYSGSSFSKS  GG A
Sbjct: 319 ---------------------------------------GNFKSQYSGSSFSKSGLGGRA 378

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QRSS S+H ISST GSH+ARS+RV+S+SGKSSVCYNC QLGHYRRDCPHLIPG NTILKT
Sbjct: 379 QRSSGSNHPISSTAGSHIARSDRVLSKSGKSSVCYNCGQLGHYRRDCPHLIPGGNTILKT 438

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
           TSQTV QQLRTT TSGEGSSG KQ GLVGRSRQEGKV AMTQQEAADAPN+VT+GV KEL
Sbjct: 439 TSQTVSQQLRTTRTSGEGSSGEKQNGLVGRSRQEGKVCAMTQQEAADAPNVVTIGVDKEL 498

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
           ESLTEELLIST VGDSFIVNSVYRKCSILID ETLEVDLIPLNIQEFDVILGMDFLSNHY
Sbjct: 499 ESLTEELLISTLVGDSFIVNSVYRKCSILIDDETLEVDLIPLNIQEFDVILGMDFLSNHY 528

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 540
           ASLNCH+KEIVFKRPRKSEIIF G+RKILPTYVIS LKASKLLRKGCTAYLA+VMDTQIS
Sbjct: 559 ASLNCHRKEIVFKRPRKSEIIFHGDRKILPTYVISTLKASKLLRKGCTAYLANVMDTQIS 528

[Close]

BLAST of IVF0016205.2 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 674 bits (1738), Expect = 2.28e-235
Identity = 380/547 (69.47%), Postives = 398/547 (72.76%), Query Frame = 0


Query: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
           MP+G+PRKHPDAEASNAA+EAAMGSGESDAESSRP VE NVEEQLLDRLAQRL+ GIR A
Sbjct: 1   MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLA 60

Query: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120
           QSD EKKYG ERLKALGATTF GTTNP D E WLTLIEKCF+VTR  EDRKVELAAFLLQ
Sbjct: 61  QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQ 120

Query: 121 NDAEDWWRMEEN-----------EFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAEYE 180
           N AEDWW MEE+           EFKKAFFDKFYP SF DAKHN                
Sbjct: 121 NGAEDWWHMEESRRRTTGDMIWGEFKKAFFDKFYPPSFHDAKHN---------------- 180

Query: 181 KKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLN 240
                      +VI D+ ERCKRFEEGLREEIRTPVTACADWNDFSKLV  ALRV+KSLN
Sbjct: 181 -----------KVIEDKVERCKRFEEGLREEIRTPVTACADWNDFSKLVNAALRVQKSLN 240

Query: 241 ERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGA 300
           ERKRERE SKN+ TFS SMHRNR GK RSGRFVP VSSRG+FKSQY+GSSFSKSRSGGGA
Sbjct: 241 ERKRERETSKNVHTFSLSMHRNRQGKGRSGRFVPGVSSRGNFKSQYNGSSFSKSRSGGGA 300

Query: 301 QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKT 360
           QR S SSH ISSTGGSH+ARS+RVV ESGKSSVCYNC QL HYRRDCPHLIPG       
Sbjct: 301 QRWSGSSHPISSTGGSHIARSDRVVLESGKSSVCYNCGQLEHYRRDCPHLIPG------- 360

Query: 361 TSQTVIQQLRTTGTSGEGSSGGKQKGLVGRSRQEGKVFAMTQQEAADAPNIVTVGVVKEL 420
                                    G +GRSRQEGKVFAMTQQEAADAPN+VT       
Sbjct: 361 -------------------------GPLGRSRQEGKVFAMTQQEAADAPNVVT------- 420

Query: 421 ESLTEELLISTPVGDSFIVNSVYRKCSILIDGETLEVDLIPLNIQEFDVILGMDFLSNHY 480
                                              EVDLI LNIQ+FDVILGMDFLSNHY
Sbjct: 421 -----------------------------------EVDLISLNIQKFDVILGMDFLSNHY 446

Query: 481 ASLNCHQKEIVFKRPRKSEIIFRGERKILPTYVISALKASKLLRKGCTAYLAHVMDTQIS 536
           ASLNCHQKEIVFKRP KSEIIFRG+RKILPTYVI ALKASKLLRKGCTAYLAHVMDTQIS
Sbjct: 481 ASLNCHQKEIVFKRPGKSEIIFRGDRKILPTYVIFALKASKLLRKGCTAYLAHVMDTQIS 446

The following BLAST results are available for this feature:

BLAST of IVF0016205.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016205.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BB91	7.2e-282	94.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	5.2e-264	91.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7UZM6	1.9e-237	81.57	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DS52	4.9e-190	68.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7SJ99	3.2e-189	69.47	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0016205.2 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95881.1	0.0	94.01	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0036813.1	0.0	91.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0060484.1	3.18e-300	81.31	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0067055.1	9.43e-239	68.78	reverse transcriptase [Cucumis melo var. makuwa] >TYK26292.1 reverse transcripta...	[more]
KAA0026280.1	2.28e-235	69.47	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]

BLAST of IVF0016205.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 409..485 e-value: 2.7E-21 score: 75.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 88..338
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 88..338
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 418..465 e-value: 9.37208E-6 score: 42.3236
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 399..496 e-value: 7.5E-10 score: 40.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 322..338 e-value: 2.6E-4 score: 21.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 323..337 score: 10.081271
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 115..199 e-value: 5.3E-9 score: 36.2
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 317..344

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0016205	IVF0016205	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016205.2-exon	IVF0016205.2-exon-chr04:7905329..7905722	exon
IVF0016205.2-exon	IVF0016205.2-exon-chr04:7905756..7906568	exon
IVF0016205.2-exon	IVF0016205.2-exon-chr04:7906653..7907086	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016205.2-cds	IVF0016205.2-cds-chr04:7905329..7905722	CDS
IVF0016205.2-cds	IVF0016205.2-cds-chr04:7905756..7906568	CDS
IVF0016205.2-cds	IVF0016205.2-cds-chr04:7906653..7907086	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0016205.2	IVF0016205.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008233	peptidase activity