IVF0015644.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015644.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cytochrome P450 77A3-like
Location	chr04: 6606839 .. 6607079 (+)
Sequence length	201
RNA-Seq Expression	IVF0015644.1
Synteny	IVF0015644.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACCAAACGGTTGTGAAAATGGATGAGATTTTGAAATCCATATTGATCGTTGACAGCGACGACTGGAGAATCCGAATTCGTTGTTGAGTTAATTAATCGATGGCGAAGAGAACTGGAGAATCCAGCTTCTTACGGCTATGCGACGCTGTTTTCGTACATGGACACGCTTTGGATTTTAAAATCGACGGGCATGGTAGCGAAGGGAATTCGCGGACAATGGACAGGAAATTGGTGA

mRNA sequence

ATGGAAGACCAAACGGTTGTGAAAATGGATGAGATTTTGAAATCCATATTGATCTTAATTAATCGATGGCGAAGAGAACTGGAGAATCCAGCTTCTTACGGCTATGCGACGCTGTTTTCGTACATGGACACGCTTTGGATTTTAAAATCGACGGGCATGGTAGCGAAGGGAATTCGCGGACAATGGACAGGAAATTGGTGA

Coding sequence (CDS)

ATGGAAGACCAAACGGTTGTGAAAATGGATGAGATTTTGAAATCCATATTGATCTTAATTAATCGATGGCGAAGAGAACTGGAGAATCCAGCTTCTTACGGCTATGCGACGCTGTTTTCGTACATGGACACGCTTTGGATTTTAAAATCGACGGGCATGGTAGCGAAGGGAATTCGCGGACAATGGACAGGAAATTGGTGA

Protein sequence

MEDQTVVKMDEILKSILILINRWRRELENPASYGYATLFSYMDTLWILKSTGMVAKGIRGQWTGNW

Homology

[Close]

BLAST of IVF0015644.1 vs. ExPASy TrEMBL
Match: A0A5A7UUQ5 (Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00660 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MEDQTVVKMDEILKSILI------------LINRWRRELENPASYGYATLFSYMDTLWIL 60
          MEDQTVVKMDEILKSILI            LINR RRELEN      ATLF Y+DTL IL
Sbjct: 1  MEDQTVVKMDEILKSILIDDDDHWRKFVVELINRRRRELENTTFDDDATLFWYLDTLSIL 60

Query: 61 KSTGMVAKGIRGQWTGNW 67
          KS G+VA+GIR + TGNW
Sbjct: 61 KSRGVVAEGIRRRRTGNW 78

[Close]

BLAST of IVF0015644.1 vs. ExPASy TrEMBL
Match: A0A0A0KWN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615280 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 40/94 (42.55%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILI-------------------------------------LINRW 58
           MED+TVVKMDEILKS+LI                                     LINR 
Sbjct: 194 MEDETVVKMDEILKSVLIALDPRIDDYFPILSPFFSRERNRANLVRRKQVEFVVELINRR 253

[Close]

BLAST of IVF0015644.1 vs. ExPASy TrEMBL
Match: A0A5A7V7L0 (Glucose-induced degradation protein 8-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00130 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-05
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILILINRWRRELENPASYGYATLFSYMDTLWILKSTGMVAKGIRG 60
           MEDQTV+KMDEILK                 S G AT F Y+DTL ILKSTG+ A+ IR 
Sbjct: 233 MEDQTVMKMDEILK-----------------SDGDATPFLYLDTLSILKSTGVAAEEIRR 281

Query: 61  QWTGNW 67
           + TGNW
Sbjct: 293 RRTGNW 281

[Close]

BLAST of IVF0015644.1 vs. ExPASy TrEMBL
Match: A0A5D3C2H1 (Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00210 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-05
Identity = 37/89 (41.57%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 1  MEDQTVVKMDEILKSILI-------------------------------------LINRW 53
          MED+TVVKMDEILKS+LI                                     LINRW
Sbjct: 1  MEDETVVKMDEILKSVLITLDPRIDDYFLILTPFFSRQRNRANLVRKKQVEFVLELINRW 60

[Close]

BLAST of IVF0015644.1 vs. ExPASy TrEMBL
Match: A0A5D3CDE2 (Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002110 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-05
Identity = 39/94 (41.49%), Postives = 44/94 (46.81%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILI-------------------------------------LINRW 58
           MED+TVVKMDEILKS+LI                                     LINR 
Sbjct: 194 MEDETVVKMDEILKSVLITLDPRIDDYFPILTPFFSRERNRATLVRKKQVEFVVELINRR 253

[Close]

BLAST of IVF0015644.1 vs. NCBI nr
Match: KAA0059643.1 (cytochrome P450 77A3-like [Cucumis melo var. makuwa] >TYK08174.1 cytochrome P450 77A3-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.05e-19
Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1  MEDQTVVKMDEILKSILI------------LINRWRRELENPASYGYATLFSYMDTLWIL 60
          MEDQTVVKMDEILKSILI            LINR RRELEN      ATLF Y+DTL IL
Sbjct: 1  MEDQTVVKMDEILKSILIDDDDHWRKFVVELINRRRRELENTTFDDDATLFWYLDTLSIL 60

Query: 61 KSTGMVAKGIRGQWTGNW 66
          KS G+VA+GIR + TGNW
Sbjct: 61 KSRGVVAEGIRRRRTGNW 78

[Close]

BLAST of IVF0015644.1 vs. NCBI nr
Match: KAA0063230.1 (glucose-induced degradation protein 8-like protein [Cucumis melo var. makuwa] >TYK13480.1 glucose-induced degradation protein 8-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.89e-08
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILILINRWRRELENPASYGYATLFSYMDTLWILKSTGMVAKGIRG 60
           MEDQTV+KMDEILKS                  G AT F Y+DTL ILKSTG+ A+ IR 
Sbjct: 233 MEDQTVMKMDEILKSD-----------------GDATPFLYLDTLSILKSTGVAAEEIRR 281

Query: 61  QWTGNW 66
           + TGNW
Sbjct: 293 RRTGNW 281

[Close]

BLAST of IVF0015644.1 vs. NCBI nr
Match: TYK04616.1 (cytochrome P450 77A3-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 7.16e-08
Identity = 37/89 (41.57%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 1  MEDQTVVKMDEILKSILI-------------------------------------LINRW 52
          MED+TVVKMDEILKS+LI                                     LINRW
Sbjct: 1  MEDETVVKMDEILKSVLITLDPRIDDYFLILTPFFSRQRNRANLVRKKQVEFVLELINRW 60

[Close]

BLAST of IVF0015644.1 vs. NCBI nr
Match: XP_011655840.1 (cytochrome P450 77A3 [Cucumis sativus] >KGN52206.1 hypothetical protein Csa_008137 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 8.48e-08
Identity = 40/94 (42.55%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILI-------------------------------------LINRW 57
           MED+TVVKMDEILKS+LI                                     LINR 
Sbjct: 194 MEDETVVKMDEILKSVLIALDPRIDDYFPILSPFFSRERNRANLVRRKQVEFVVELINRR 253

[Close]

BLAST of IVF0015644.1 vs. NCBI nr
Match: KAA0034667.1 (cytochrome P450 77A3-like [Cucumis melo var. makuwa] >TYK09218.1 cytochrome P450 77A3-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.54e-07
Identity = 39/94 (41.49%), Postives = 44/94 (46.81%), Query Frame = 0


Query: 1   MEDQTVVKMDEILKSILI-------------------------------------LINRW 57
           MED+TVVKMDEILKS+LI                                     LINR 
Sbjct: 194 MEDETVVKMDEILKSVLITLDPRIDDYFPILTPFFSRERNRATLVRKKQVEFVVELINRR 253

The following BLAST results are available for this feature:

BLAST of IVF0015644.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015644.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUQ5	2.6e-13	64.10	Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KWN5	1.6e-05	42.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615280 PE=3 SV=1	[more]
A0A5A7V7L0	2.6e-05	53.03	Glucose-induced degradation protein 8-like protein OS=Cucumis melo var. makuwa O...	[more]
A0A5D3C2H1	4.5e-05	41.57	Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CDE2	7.7e-05	41.49	Cytochrome P450 77A3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of IVF0015644.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059643.1	1.05e-19	64.10	cytochrome P450 77A3-like [Cucumis melo var. makuwa] >TYK08174.1 cytochrome P450...	[more]
KAA0063230.1	4.89e-08	53.03	glucose-induced degradation protein 8-like protein [Cucumis melo var. makuwa] >T...	[more]
TYK04616.1	7.16e-08	41.57	cytochrome P450 77A3-like [Cucumis melo var. makuwa]	[more]
XP_011655840.1	8.48e-08	42.55	cytochrome P450 77A3 [Cucumis sativus] >KGN52206.1 hypothetical protein Csa_0081...	[more]
KAA0034667.1	5.54e-07	41.49	cytochrome P450 77A3-like [Cucumis melo var. makuwa] >TYK09218.1 cytochrome P450...	[more]

BLAST of IVF0015644.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015644	IVF0015644	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015644.1-exon	IVF0015644.1-exon-chr04:6606839..6606892	exon
IVF0015644.1-exon	IVF0015644.1-exon-chr04:6606933..6607079	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015644.1-cds	IVF0015644.1-cds-chr04:6606839..6606892	CDS
IVF0015644.1-cds	IVF0015644.1-cds-chr04:6606933..6607079	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015644.1	IVF0015644.1-protein	polypeptide