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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAAGGACTCAATGTAATGCATTTCTTAGGCTGTTGCTGACAGAAACAACCTCTTTCTCTCTCTCTCTTTCTCTCTTCCTCGACCAGTTCTCCGTCTCCTTCAACTGTTCCTGCAGATTCCCCCTCTTCTTCTTCAACCTACTCACGGCAGCTTCCTCCGGCTCCGACGACGCCAGTAACAAACCACTTCCTATCCTCCCTTCACCAACTATTCCCTAAAACTCCACCCACTATCCAATATGTTTCTAACCTTCCGGATCTGAATCAGACCCTAAATCTGAAACTGGCTTCTCTCTCTATATTTTGA mRNA sequence ATGAAAGGACTCAATGTAATGCATTTCTTAGGCTATTCCCCCTCTTCTTCTTCAACCTACTCACGGCAGCTTCCTCCGGCTCCGACGACGCCAGTAACAAACCACTTCCTATCCTCCCTTCACCAACTATTCCCTAAAACTCCACCCACTATCCAATATGTTTCTAACCTTCCGGATCTGAATCAGACCCTAAATCTGAAACTGGCTTCTCTCTCTATATTTTGA Coding sequence (CDS) ATGAAAGGACTCAATGTAATGCATTTCTTAGGCTATTCCCCCTCTTCTTCTTCAACCTACTCACGGCAGCTTCCTCCGGCTCCGACGACGCCAGTAACAAACCACTTCCTATCCTCCCTTCACCAACTATTCCCTAAAACTCCACCCACTATCCAATATGTTTCTAACCTTCCGGATCTGAATCAGACCCTAAATCTGAAACTGGCTTCTCTCTCTATATTTTGA Protein sequence MKGLNVMHFLGYSPSSSSTYSRQLPPAPTTPVTNHFLSSLHQLFPKTPPTIQYVSNLPDLNQTLNLKLASLSIF
Homology
BLAST of IVF0015620.1 vs. ExPASy TrEMBL
Match: A0A0A0L6S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G251900 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25 Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0 Query: 1 MKGLNVMHFLGYSPSSSSTYSRQLPPAPTTPVTNHFLSSLHQLFPKTPPTIQYVSNLPDL 60 MKGLNV+HFLGYSPSSSSTYSRQLPPA +TNHF SSLHQL PKTPPTI YVSNLPDL Sbjct: 1 MKGLNVLHFLGYSPSSSSTYSRQLPPA---RLTNHFRSSLHQLCPKTPPTIHYVSNLPDL 60
Query: 61 NQTLNLKLASLSIF 75 NQTLNLKLASLS+F Sbjct: 61 NQTLNLKLASLSVF 71
BLAST of IVF0015620.1 vs. NCBI nr
Match: KGN57680.1 (hypothetical protein Csa_010019 [Cucumis sativus]) HSP 1 Score: 123 bits (309), Expect = 4.76e-35 Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0 Query: 1 MKGLNVMHFLGYSPSSSSTYSRQLPPAPTTPVTNHFLSSLHQLFPKTPPTIQYVSNLPDL 60 MKGLNV+HFLGYSPSSSSTYSRQLPPA +TNHF SSLHQL PKTPPTI YVSNLPDL Sbjct: 1 MKGLNVLHFLGYSPSSSSTYSRQLPPAR---LTNHFRSSLHQLCPKTPPTIHYVSNLPDL 60
Query: 61 NQTLNLKLASLSIF 74 NQTLNLKLASLS+F Sbjct: 61 NQTLNLKLASLSVF 71
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L6S4 | 1.5e-25 | 86.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G251900 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN57680.1 | 4.76e-35 | 86.49 | hypothetical protein Csa_010019 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0015620 | IVF0015620 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0015620.1-exon | IVF0015620.1-exon-chr06:11406138..11406328 | exon |
IVF0015620.1-exon | IVF0015620.1-exon-chr06:11406413..11406446 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0015620.1-cds | IVF0015620.1-cds-chr06:11406138..11406328 | CDS |
IVF0015620.1-cds | IVF0015620.1-cds-chr06:11406413..11406446 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0015620.1 | IVF0015620.1-protein | polypeptide |
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