IVF0010105.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0010105.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 17701770 .. 17702048 (+)
Sequence length	279
RNA-Seq Expression	IVF0010105.1
Synteny	IVF0010105.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGGTTCGCTGAGACATTCGCCGAAGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAGGAGTTTCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAAGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCAAGACTTTGATGTTGAACCCATACTTCTAGCGCTCGACCAAACAAATGAGCAACTCAGGTAG

mRNA sequence

ATGGGTCGGTTCGCTGAGACATTCGCCGAAGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAGGAGTTTCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAAGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCAAGACTTTGATGTTGAACCCATACTTCTAGCGCTCGACCAAACAAATGAGCAACTCAGGTAG

Coding sequence (CDS)

ATGGGTCGGTTCGCTGAGACATTCGCCGAAGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAATGAGGAGTTTCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAAGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCAAGACTTTGATGTTGAACCCATACTTCTAGCGCTCGACCAAACAAATGAGCAACTCAGGTAG

Protein sequence

MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQQDFDVEPILLALDQTNEQLR

Homology

[Close]

BLAST of IVF0010105.1 vs. ExPASy TrEMBL
Match: A0A5A7U2A0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001890 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.8e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT 60
           MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT
Sbjct: 311 MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT 370

Query: 61  GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR 93
           GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR
Sbjct: 371 GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR 402

[Close]

BLAST of IVF0010105.1 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.1e-39
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 93
           SSGSKRKRGSQ+DFDVE I LALDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233

[Close]

BLAST of IVF0010105.1 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.1e-39
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 93
           SSGSKRKRGSQ+DFDVE I LALDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233

[Close]

BLAST of IVF0010105.1 vs. ExPASy TrEMBL
Match: A0A5A7VHM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00480 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 93
           SSGSKRKRGSQ+DFDVE I L LDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIYLVLDQTNEQLR 233

[Close]

BLAST of IVF0010105.1 vs. ExPASy TrEMBL
Match: A0A5A7V480 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004010 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 83/91 (91.21%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEG+TG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGKTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 93
           SSGSKRKRGSQ+DFDVE I LALDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233

[Close]

BLAST of IVF0010105.1 vs. NCBI nr
Match: KAA0047721.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08375.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 9.51e-54
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT 60
           MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT
Sbjct: 311 MGRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRT 370

Query: 61  GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR 92
           GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR
Sbjct: 371 GSSGSKRKRGSQQDFDVEPILLALDQTNEQLR 402

[Close]

BLAST of IVF0010105.1 vs. NCBI nr
Match: TYK21946.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (415), Expect = 4.07e-50
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 36  GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 95

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 92
           SSGSKRKR SQ+DFDV+ I LALDQTNEQLR
Sbjct: 96  SSGSKRKRESQRDFDVKAIHLALDQTNEQLR 126

[Close]

BLAST of IVF0010105.1 vs. NCBI nr
Match: KAA0065692.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 8.92e-50
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 49  GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 108

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 92
           SSGSKRKRGSQ+DF++E I LALDQTNEQLR
Sbjct: 109 SSGSKRKRGSQRDFELEAIHLALDQTNEQLR 139

[Close]

BLAST of IVF0010105.1 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (427), Expect = 1.10e-49
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 92
           SSGSKRKRGSQ+DFDVE I LALDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233

[Close]

BLAST of IVF0010105.1 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (427), Expect = 1.10e-49
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 2   GRFAETFAEVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLSQDDVRASRPSRASEGRTG 61
           GRFAETFA+VGSNEPGGGYDRFDMGDGNE+FPPVYSQG+D+SQDDVRASRPSRASEGRTG
Sbjct: 143 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTG 202

Query: 62  SSGSKRKRGSQQDFDVEPILLALDQTNEQLR 92
           SSGSKRKRGSQ+DFDVE I LALDQTNEQLR
Sbjct: 203 SSGSKRKRGSQRDFDVEAIHLALDQTNEQLR 233

The following BLAST results are available for this feature:

BLAST of IVF0010105.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010105.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2A0	5.8e-43	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6Q9	5.1e-39	92.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VES2	5.1e-39	92.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VHM3	8.7e-39	91.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V480	1.1e-38	91.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0010105.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047721.1	9.51e-54	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK08375.1 retrotransposon p...	[more]
TYK21946.1	4.07e-50	90.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065692.1	8.92e-50	90.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066208.1	1.10e-49	92.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064022.1	1.10e-49	92.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010105.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0010105	IVF0010105	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010105.1-exon	IVF0010105.1-exon-chr05:17701770..17702048	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0010105.1-cds	IVF0010105.1-cds-chr05:17701770..17702048	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0010105.1	IVF0010105.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding