IVF0009076.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0009076.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 19871136 .. 19871390 (-)
Sequence length	255
RNA-Seq Expression	IVF0009076.1
Synteny	IVF0009076.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGACCGGAGAAGGTCCGTTGACGGCGCTATCGTCCGGCGAACAACGGCGTTGCGCGGATGGTCAGCTCGGGCAACGCGGCTAGGCTTGCAACGACAGCTGATGGAAAGCTCGAACGAATGGATGCGCTCCACTCCCGGCACCGAGGATGGAATGGTCCACGGCTGGCTTCGGCTTGGTTGCGTCAGACGACTGGCTGACCGAGACGACGGTGCGGCAATTAGGGTGGCGGGTCGCGGCGGCCGACGATGA

mRNA sequence

ATGAACGACCGGAGAAGGTCCGTTGACGGCGCTATCGTCCGGCGAACAACGGCGTTGCGCGGATGGTCAGCTCGGGCAACGCGGCTAGGCTTGCAACGACAGCTGATGGAAAGCTCGAACGAATGGATGCGCTCCACTCCCGGCACCGAGGATGGAATGGTCCACGGCTGGCTTCGGCTTGGTTGCGTCAGACGACTGGCTGACCGAGACGACGGTGCGGCAATTAGGGTGGCGGGTCGCGGCGGCCGACGATGA

Coding sequence (CDS)

ATGAACGACCGGAGAAGGTCCGTTGACGGCGCTATCGTCCGGCGAACAACGGCGTTGCGCGGATGGTCAGCTCGGGCAACGCGGCTAGGCTTGCAACGACAGCTGATGGAAAGCTCGAACGAATGGATGCGCTCCACTCCCGGCACCGAGGATGGAATGGTCCACGGCTGGCTTCGGCTTGGTTGCGTCAGACGACTGGCTGACCGAGACGACGGTGCGGCAATTAGGGTGGCGGGTCGCGGCGGCCGACGATGA

Protein sequence

MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRLGCVRRLADRDDGAAIRVAGRGGRR

Homology

[Close]

BLAST of IVF0009076.1 vs. ExPASy TrEMBL
Match: A0A5A7VLK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00430 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 60
           MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL
Sbjct: 143 MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 202

Query: 61  GCVRRLADRDDGAAIRVAGRGGRR 85
           GCVRRLADRDDGAAIRVAGRGGRR
Sbjct: 203 GCVRRLADRDDGAAIRVAGRGGRR 226

[Close]

BLAST of IVF0009076.1 vs. ExPASy TrEMBL
Match: A0A5D3DQZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00300 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 60
           MNDRRRSVDGAIVRRTTAL GWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL
Sbjct: 143 MNDRRRSVDGAIVRRTTALSGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 202

Query: 61  GCVRRLADRDDGAAIRVAGRGGRR 85
           GCVRRLADRDDGAAIRVAGRGGRR
Sbjct: 203 GCVRRLADRDDGAAIRVAGRGGRR 226

[Close]

BLAST of IVF0009076.1 vs. ExPASy TrEMBL
Match: A0A5A7UB87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00240 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-04
Identity = 36/80 (45.00%), Postives = 37/80 (46.25%), Query Frame = 0


Query: 1   MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 60
           M+ RRRSVD AI R                                 G EDG V  WLRL
Sbjct: 59  MDGRRRSVDDAIARL--------------------------------GDEDGRVRVWLRL 106

Query: 61  GCVRRLADRDDGAAIRVAGR 81
           GCV RLA RDDGAA RVAGR
Sbjct: 119 GCVGRLATRDDGAAFRVAGR 106

[Close]

BLAST of IVF0009076.1 vs. NCBI nr
Match: KAA0068090.1 (hypothetical protein E6C27_scaffold238G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 1.19e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 60
           MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL
Sbjct: 143 MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 202

Query: 61  GCVRRLADRDDGAAIRVAGRGGRR 84
           GCVRRLADRDDGAAIRVAGRGGRR
Sbjct: 203 GCVRRLADRDDGAAIRVAGRGGRR 226

[Close]

BLAST of IVF0009076.1 vs. NCBI nr
Match: TYK26073.1 (hypothetical protein E5676_scaffold1185G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 9.68e-50
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MNDRRRSVDGAIVRRTTALRGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 60
           MNDRRRSVDGAIVRRTTAL GWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL
Sbjct: 143 MNDRRRSVDGAIVRRTTALSGWSARATRLGLQRQLMESSNEWMRSTPGTEDGMVHGWLRL 202

Query: 61  GCVRRLADRDDGAAIRVAGRGGRR 84
           GCVRRLADRDDGAAIRVAGRGGRR
Sbjct: 203 GCVRRLADRDDGAAIRVAGRGGRR 226

[Close]

BLAST of IVF0009076.1 vs. NCBI nr
Match: KAA0053203.1 (hypothetical protein E6C27_scaffold1192G00300 [Cucumis melo var. makuwa] >TYK00138.1 hypothetical protein E5676_scaffold2510G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.30e-07
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 48  GTEDGMVHGWLRLGCVRRLADRDDGAAIRVAGR 80
           G EDG V  WLRLGCV RLA RDDGAA RVAGR
Sbjct: 74  GDEDGRVRVWLRLGCVGRLATRDDGAAFRVAGR 106

The following BLAST results are available for this feature:

BLAST of IVF0009076.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009076.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLK1	3.6e-39	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DQZ2	1.8e-38	98.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UB87	2.9e-04	45.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0009076.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068090.1	1.19e-50	100.00	hypothetical protein E6C27_scaffold238G00430 [Cucumis melo var. makuwa]	[more]
TYK26073.1	9.68e-50	98.81	hypothetical protein E5676_scaffold1185G00300 [Cucumis melo var. makuwa]	[more]
KAA0053203.1	3.30e-07	78.79	hypothetical protein E6C27_scaffold1192G00300 [Cucumis melo var. makuwa] >TYK001...	[more]

BLAST of IVF0009076.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0009076	IVF0009076	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0009076.1-exon	IVF0009076.1-exon-chr04:19871136..19871390	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0009076.1-cds	IVF0009076.1-cds-chr04:19871136..19871390	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0009076.1	IVF0009076.1-protein	polypeptide