IVF0007134.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0007134.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon, En/Spm-like protein
Location	chr06: 19927382 .. 19928229 (+)
Sequence length	459
RNA-Seq Expression	IVF0007134.1
Synteny	IVF0007134.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGTATGTATTATTTTCTATGTTAAATCTTCTAGTTTTCATACAAAATTAGATGTATTAATATTAATATTAATATTTCTTATGTAGGTTCTAGTACAAAAACAAAAGGCCGAGGAGCAACTAGAGGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCGAATTAGGATTGACTTTGAAGATAGAAAACCAATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGGAAAAGAGGTACGAGCGATAGTACCACTTGAATGCGAGCATTGGTCAGATGTATCGAAAGAGGTGAAAAGGGAGATAGTAGATAGACTTTCGGTAAGCTATTTAAGTTTAGTTTTAAGGAAATACTATGTAATTTGTTCTAGACCAAATATATACTAATTTGTTTTATTTCTTAATGCTAGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAAATGAGCGTGTTGTATAGAGACTTTCGTTGTTCACTACACAAAAGCTACAAAAAGTATGACTCTCCAGCTGAAGCATGAAAACACCGTGACAAACGAGTGGCACGAGATTCGGATTAGGCTCGTTTATGTGATCGATGGGAACGAGAAGATTTTAAGAGTAGATCTGAAGCAAATTCTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACAACATTTATTTTTGTATTGTAGTTATATATACTTTTTATATTTATAA

mRNA sequence

ATGAACGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGAGCAACTAGAGGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCGAATTAGGATTGACTTTGAAGATAGAAAACCAATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGGAAAAGAGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAAATGAGCGTGTTGTATAGAGACTTTCGTTGTTCACTACACAAAAGCTACAAAAATAGATCTGAAGCAAATTCTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACAACATTTATTTTTGTATTGTAGTTATATATACTTTTTATATTTATAA

Coding sequence (CDS)

ATGAACGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGAGCAACTAGAGGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCGAATTAGGATTGACTTTGAAGATAGAAAACCAATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGGAAAAGAGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAAATGAGCGTGTTGTATAGAGACTTTCGTTGTTCACTACACAAAAGCTACAAAAATAGATCTGAAGCAAATTCTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACAACATTTATTTTTGTATTGTAGTTATATATACTTTTTATATTTATAA

Protein sequence

MNEANNSNQNSIGEQEVVSIDSDIQRATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYKNRSEANSKARSKLPFTHRGGTSTFLRHKQKMVQHLFLYCSYIYFLYL

Homology

[Close]

BLAST of IVF0007134.1 vs. ExPASy TrEMBL
Match: A0A0A0LM17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.1e-49
Identity = 112/172 (65.12%), Postives = 125/172 (72.67%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQRATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSS 60
           M+++NNSNQNSIGEQEVV +DSDIQ+  R   LEKYVQANG I I+I+ +DRKPICKDSS
Sbjct: 1   MHQSNNSNQNSIGEQEVVFVDSDIQKGLR--ALEKYVQANGLIPIKIELKDRKPICKDSS 60

Query: 61  KLNSQIGKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSY---------------- 120
           K NSQIGKENYFILDL++PLVQDYL+HEMSVLYRDF CSLHKSY                
Sbjct: 61  KSNSQIGKENYFILDLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDKR 120

Query: 121 -------------------KNRSEANSKARSKLPFTHRGGTSTFLRHKQKMV 138
                              K+RSEAN+KARSKLPFTHRGGT TFLRHKQKMV
Sbjct: 121 VAQDSDWARLCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKMV 170

[Close]

BLAST of IVF0007134.1 vs. ExPASy TrEMBL
Match: A0A5D3BIG6 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00880 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNE +NSNQNSIGEQEVVSIDSDIQ          ATR VGLEKYVQ NGP RIRIDFED
Sbjct: 232 MNEPSNSNQNSIGEQEVVSIDSDIQSSSTKTKGQGATRRVGLEKYVQENGPSRIRIDFED 291

Query: 61  RKPICKDSSKLNSQI--GKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYKNRSE 116
           RKPI   S ++  +I  G  NYFILD+NEPLVQDYLEHEMSVLYRDFRCSLHKSYK + +
Sbjct: 292 RKPIYV-SKEVKREIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYK-KYD 351

[Close]

BLAST of IVF0007134.1 vs. ExPASy TrEMBL
Match: A0A5A7SQC8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00910 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNE +NSNQNSIGEQEVVSIDSDIQ          ATR VGLEKYVQ NGP RIRIDFED
Sbjct: 232 MNEPSNSNQNSIGEQEVVSIDSDIQSSSTKTKGQGATRRVGLEKYVQENGPSRIRIDFED 291

Query: 61  RKPICKDSSKLNSQI--GKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYKNRSE 116
           RKPI   S ++  +I  G  NYFILD+NEPLVQDYLEHEMSVLYRDFRCSLHKSYK + +
Sbjct: 292 RKPIYV-SKEVKREIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYK-KYD 351

[Close]

BLAST of IVF0007134.1 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-26
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
          MNEANNSNQNSIGEQEVVSIDSDIQ          ATRGVGLEKYVQANGPIRIRIDFED
Sbjct: 1  MNEANNSNQNSIGEQEVVSIDSDIQSSSTKTKGRGATRGVGLEKYVQANGPIRIRIDFED 60

Query: 61 RKPICKDSSKLNSQIGKENYFILDL 77
          RKPICKDSSKLNSQIGKE   I+ L
Sbjct: 61 RKPICKDSSKLNSQIGKEVRAIVPL 85

[Close]

BLAST of IVF0007134.1 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-26
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNEANNSNQNSIGEQEVVSIDSDIQ          ATRGVGLEKYVQANGPIRIRIDFED
Sbjct: 18  MNEANNSNQNSIGEQEVVSIDSDIQSSSTKTKGRGATRGVGLEKYVQANGPIRIRIDFED 77

Query: 61  RKPICKDSSKLNSQIGKENYFILDL 77
           RKPICKDSSKLNSQIGKE   I+ L
Sbjct: 78  RKPICKDSSKLNSQIGKEVRAIVPL 102

[Close]

BLAST of IVF0007134.1 vs. NCBI nr
Match: TYJ98779.1 (hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 1.12e-41
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNE +NSNQNSIGEQEVVSIDSDIQ          ATR VGLEKYVQ NGP RIRIDFED
Sbjct: 232 MNEPSNSNQNSIGEQEVVSIDSDIQSSSTKTKGQGATRRVGLEKYVQENGPSRIRIDFED 291

Query: 61  RKPICKDSSKLNSQI--GKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYKNRSE 115
           RKPI   S ++  +I  G  NYFILD+NEPLVQDYLEHEMSVLYRDFRCSLHKSYK + +
Sbjct: 292 RKPIYV-SKEVKREIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYK-KYD 351

[Close]

BLAST of IVF0007134.1 vs. NCBI nr
Match: KAA0032748.1 (hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 1.12e-41
Identity = 90/126 (71.43%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNE +NSNQNSIGEQEVVSIDSDIQ          ATR VGLEKYVQ NGP RIRIDFED
Sbjct: 232 MNEPSNSNQNSIGEQEVVSIDSDIQSSSTKTKGQGATRRVGLEKYVQENGPSRIRIDFED 291

Query: 61  RKPICKDSSKLNSQI--GKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYKNRSE 115
           RKPI   S ++  +I  G  NYFILD+NEPLVQDYLEHEMSVLYRDFRCSLHKSYK + +
Sbjct: 292 RKPIYV-SKEVKREIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYK-KYD 351

[Close]

BLAST of IVF0007134.1 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.49e-32
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
          MNEANNSNQNSIGEQEVVSIDSDIQ          ATRGVGLEKYVQANGPIRIRIDFED
Sbjct: 1  MNEANNSNQNSIGEQEVVSIDSDIQSSSTKTKGRGATRGVGLEKYVQANGPIRIRIDFED 60

Query: 61 RKPICKDSSKLNSQIGKENYFILDL 76
          RKPICKDSSKLNSQIGKE   I+ L
Sbjct: 61 RKPICKDSSKLNSQIGKEVRAIVPL 85

[Close]

BLAST of IVF0007134.1 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 3.59e-32
Identity = 70/85 (82.35%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQR---------ATRGVGLEKYVQANGPIRIRIDFED 60
           MNEANNSNQNSIGEQEVVSIDSDIQ          ATRGVGLEKYVQANGPIRIRIDFED
Sbjct: 18  MNEANNSNQNSIGEQEVVSIDSDIQSSSTKTKGRGATRGVGLEKYVQANGPIRIRIDFED 77

Query: 61  RKPICKDSSKLNSQIGKENYFILDL 76
           RKPICKDSSKLNSQIGKE   I+ L
Sbjct: 78  RKPICKDSSKLNSQIGKEVRAIVPL 102

[Close]

BLAST of IVF0007134.1 vs. NCBI nr
Match: KAE8651942.1 (hypothetical protein Csa_006405 [Cucumis sativus])

HSP 1 Score: 110 bits (274), Expect = 1.31e-26
Identity = 74/171 (43.27%), Postives = 84/171 (49.12%), Query Frame = 0


Query: 1   MNEANNSNQNSIGEQEVVSIDSDIQRATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSS 60
           M+++NNSNQNSIGEQEVV +DSDIQ                                   
Sbjct: 1   MHQSNNSNQNSIGEQEVVFVDSDIQ----------------------------------- 60

Query: 61  KLNSQIGKENYFILDLNEPLVQDYLEHEMSVLYRDFRCSLHKSYK--------------- 120
                         +L++PLVQDYL+HEMSVLYRDF CSLHKSYK               
Sbjct: 61  --------------NLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDKR 120

Query: 121 --------------------NRSEANSKARSKLPFTHRGGTSTFLRHKQKM 136
                               +RSEAN+KARSKLPFTHRGGT TFLRHKQKM
Sbjct: 121 VAQDSDWARLCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKM 122

The following BLAST results are available for this feature:

BLAST of IVF0007134.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007134.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM17	3.1e-49	65.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1	[more]
A0A5D3BIG6	1.6e-34	71.43	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SQC8	1.6e-34	71.43	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TVR8	8.2e-26	82.35	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3C2Z5	8.2e-26	82.35	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0007134.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98779.1	1.12e-41	71.43	hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa]	[more]
KAA0032748.1	1.12e-41	71.43	hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa]	[more]
KAA0046978.1	2.49e-32	82.35	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
TYK04806.1	3.59e-32	82.35	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAE8651942.1	1.31e-26	43.27	hypothetical protein Csa_006405 [Cucumis sativus]	[more]

BLAST of IVF0007134.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0007134	IVF0007134	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0007134.1-exon	IVF0007134.1-exon-chr06:19927382..19927457	exon
IVF0007134.1-exon	IVF0007134.1-exon-chr06:19927569..19927699	exon
IVF0007134.1-exon	IVF0007134.1-exon-chr06:19927873..19927982	exon
IVF0007134.1-exon	IVF0007134.1-exon-chr06:19928088..19928229	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0007134.1-cds	IVF0007134.1-cds-chr06:19927382..19927457	CDS
IVF0007134.1-cds	IVF0007134.1-cds-chr06:19927569..19927699	CDS
IVF0007134.1-cds	IVF0007134.1-cds-chr06:19927873..19927982	CDS
IVF0007134.1-cds	IVF0007134.1-cds-chr06:19928088..19928229	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0007134.1	IVF0007134.1-protein	polypeptide