IVF0005651.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0005651.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	trafficking protein particle complex subunit 2-like protein
Location	chr01: 15033806 .. 15036269 (-)
Sequence length	898
RNA-Seq Expression	IVF0005651.1
Synteny	IVF0005651.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACTATTTCGATCTTAATAAGAAACAATAATAAAAAGATAAAAAGTTAAAAGAATAATAATAATCCATTGGTTTTTTCTTCTCATTTAGAAGATCCGACCTTCTTCGTGGTATCGCAACCGAGAAATCAGCATTCCCCGAGTTTTTTCGCAATCCTGCAAAGGAATTTCGGCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGGTGCGACCCCCATGAATACCATATTTTATGGAACCCAAAATAATTTCATATATGTTTATAAGAAAAGATTTGTGATCCCTTTTTCCGATTCGGGCCGAGCTAACAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGAGAGGTATATTTATCTCGCTTGTAATTTGATATTTCGCGATCAGATCTAGGAATCTCGCTTGCTGTTGTACTCAACTAGGAGGGTTTTCGAATTGCTTTAATTTATGTGTCTTGTAGACTCCAATTCGTTTTTCTTATATTGTTTGTGGTGTTGTTGCCAGTGAACAATCCGAGAAAATCTGGACCGACACTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTGAGTATGATTGTTCATATAAGTAGGATCAGAATTGGTCCTGTTTTCTATTTCAATTGGAGTGGACCTTTAATGCTCTGTCGTTTCCAGGTATGGCTATTTGACTAATACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTGTGAGTTTCCTTTGTGGGTTTGCAATTTTCTACACCAGTATAGTTCTTTGATTTCACTTGTGACTATTACTGTCAAGTAAGTTTTGAAAAACTTCAGACTTGTTTAGTTGTGAAAACTTTAGTGATGCAAACACTTAATCAGTGCCTCCTACTATTCAATTGTCTTTTAGAAGCTTGCTTTCAATGATAAAGGGCAAGCTTTCCCGCGGTTGCTACTTTAGTATTGATGTGAGCATGATATATTCCTATAGAGGACATTAACATATATTACCTCCTTGACGGCGAGCTGAAACCGGAAGTGGCATCTGTCGGTATCTCAAATGAGCTTCTTATGCTCCGAATATGCACACTTTGATCTCTAAATACACATAGTAATAAAGGATATGTGAGTGCTATGCGCTCAACATCCAACGATAAATGAGATGTAATTCTTTCCTTGAAGTCTAGGTCTCCAAACCTATAATAGAGAATATGTGAATATAAATACCATTGTAGCTGGTTAGGAAGATAGAATTGAACATGACATATTCTAGAGACTTGAGAGGTACACCATTATAGTATTTATTCACCTCACATGCAGCAGAAACAAGAAATGACGTCCACTTAAATTTGAAGTTAGTTTCTTATCTGAAAATATTTGCGCTCAAATTTTCTTGAACAAAACCTAACAATAAGATATTTTAATAATGTGCAATTTATCATTCATTGCCATTAATATTTTTAAGCATTGTTTTCTTTTAACGTTTGTACTTATAACTCGACAGATCAACGGTTTTATTTTTACTACTCTTGCTTCTTTAGGGAGTTTTGGTTTGTCATTGGTTTGAGAAGTCTGAGTTTCATTAGTTTAAATAAGGGTGTTTAGTTATTTGTAGCCTTTATTTGGATTGTGAGGAGGATTGAGTTGTAAGAAGTTTTCTCTTTTGTACAGTTTGTGTTTCGATTACAAGCTTATAATTTTCAAGAATCTGGTGTACTGCATGTTTATAGTTCAGCTGTGCAAGATTCCAGTAAACAAGATCTATTCTATAGGTTGTGTAGCTATGTCCTAAGTGATACTATTTTGTTGTCTTAATTTATGCCTCTCTCATAGACTATACTTTTCTGAAAAAGAAAGTTAAGCTTGGCCAATTTTTTGGTTCTTCCTGTGCACTCATGCGACATGCTAAACTCCTTAACATGACATCTGACCCTAGTTCAAATTTGTATCCAGTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGAGTGACAGAACCACGCAACCATTGTGTAGAACAGAAACTTCAATACCAAGTCAAAGCCATTGACGACTGCAGTTTACAAACCATTGTTGATTACTGTCATCTTTCCTGTATTCTTGATGGTATTTGATTTTTATTTTCTCCATTGTGGTAAGAAAGGTGATAAAGTTACTTCTTTTTTTCATAGACATTGACTGTTTCTATTTTGAGCTCATATCACATAACTGGATTTTGTTTCGAGCTGAAATTTTATCTATGAGGATATTAAGTTTAGAGTTGGTTA

mRNA sequence

ATACTATTTCGATCTTAATAAGAAACAATAATAAAAAGATAAAAAGTTAAAAGAATAATAATAATCCATTGGTTTTTTCTTCTCATTTAGAAGATCCGACCTTCTTCGTGGTATCGCAACCGAGAAATCAGCATTCCCCGAGTTTTTTCGCAATCCTGCAAAGGAATTTCGGCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGAGAGTGAACAATCCGAGAAAATCTGGACCGACACTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAATACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGAGTGACAGAACCACGCAACCATTGTGTAGAACAGAAACTTCAATACCAAGTCAAAGCCATTGACGACTGCAGTTTACAAACCATTGTTGATTACTGTCATCTTTCCTGTATTCTTGATGGTATTTGATTTTTATTTTCTCCATTGTGGTAAGAAAGGTGATAAAGTTACTTCTTTTTTTCATAGACATTGACTGTTTCTATTTTGAGCTCATATCACATAACTGGATTTTGTTTCGAGCTGAAATTTTATCTATGAGGATATTAAGTTTAGAGTTGGTTA

Coding sequence (CDS)

ATGATCGTCTGCGTCGCCGTCGTTGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGAGAGTGAACAATCCGAGAAAATCTGGACCGACACTGAACGAGACATTTCTGGGTCTTCTTTATCCGACAGAAAATTACAAAGTGTATGGCTATTTGACTAATACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTTAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCGAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATTGTCAAGTCATTTGGCTTCAGTTCAGCTATTTGA

Protein sequence

MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

Homology

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BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot
Match: Q54CU7 (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum OX=44689 GN=trappc2l PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 68/139 (48.92%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 2   IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETF 61
           IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKK---LPSDMY 63

Query: 62  LGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRSFFRRFHAAYVDAVSNPFHVP 121
           LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +++  SNPF+ P
Sbjct: 64  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 123

Query: 122 GKKITSKTFAESVSTIVKS 137
             K+ SK F + V+ +V S
Sbjct: 124 NSKVESKKFLQEVTNLVPS 139

[Close]

BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot
Match: Q5M8X5 (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=trappc2l PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-32
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
             I S+ F  +V++++
Sbjct: 121 DPIQSRAFDNTVTSMM 135

[Close]

BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot
Match: B2RYU6 (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus OX=10116 GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 66/136 (48.53%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]

BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot
Match: Q9JME7 (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 66/136 (48.53%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]

BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot
Match: A6H7F7 (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-31
Identity = 66/136 (48.53%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSI-PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFAESVSTIV 135
            +I S+ F   V++++
Sbjct: 121 DRIQSRAFDGMVTSMM 135

[Close]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL
Match: A0A0A0K4Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.0e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL
Match: A0A1S3BJH9 (trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3656 GN=LOC103490277 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.0e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL
Match: A0A6J1JPT4 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111486394 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL
Match: A0A6J1ERA2 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111435157 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL
Match: A0A6J1C584 (trafficking protein particle complex subunit 2-like protein OS=Momordica charantia OX=3673 GN=LOC111008034 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.8e-74
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 144
           ITSKTFAESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of IVF0005651.1 vs. NCBI nr
Match: XP_004144858.1 (trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >XP_008447943.1 PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis melo] >XP_038887443.1 trafficking protein particle complex subunit 2-like protein [Benincasa hispida] >KGN43262.1 hypothetical protein Csa_020365 [Cucumis sativus])

HSP 1 Score: 289 bits (740), Expect = 1.42e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 143
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. NCBI nr
Match: XP_022928280.1 (trafficking protein particle complex subunit 2-like protein [Cucurbita moschata] >XP_022989273.1 trafficking protein particle complex subunit 2-like protein [Cucurbita maxima] >XP_023529813.1 trafficking protein particle complex subunit 2-like protein [Cucurbita pepo subsp. pepo] >KAG7015283.1 Trafficking protein particle complex subunit 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288 bits (737), Expect = 4.07e-98
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 143
           ITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of IVF0005651.1 vs. NCBI nr
Match: XP_022136317.1 (trafficking protein particle complex subunit 2-like protein [Momordica charantia])

HSP 1 Score: 285 bits (730), Expect = 4.76e-97
Identity = 139/143 (97.20%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSAI 143
           ITSKTFAESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of IVF0005651.1 vs. NCBI nr
Match: XP_031127945.1 (trafficking protein particle complex subunit 2-like protein [Ipomoea triloba])

HSP 1 Score: 281 bits (718), Expect = 3.11e-95
Identity = 137/142 (96.48%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 142
           ITS+TFAESVSTIVKSFG SSA
Sbjct: 121 ITSRTFAESVSTIVKSFGLSSA 142

[Close]

BLAST of IVF0005651.1 vs. NCBI nr
Match: XP_023872854.1 (trafficking protein particle complex subunit 2-like protein [Quercus suber])

HSP 1 Score: 280 bits (716), Expect = 6.50e-95
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFSSA 142
           ITSKTFAE VSTIVKSFG SSA
Sbjct: 121 ITSKTFAERVSTIVKSFGLSSA 142

[Close]

BLAST of IVF0005651.1 vs. TAIR 10
Match: AT2G20930.1 (SNARE-like superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-69
Identity = 122/140 (87.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVRSFFR+FHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFAESVSTIVKSFGFS 141
           ITS+TFA++VS IV S+G +
Sbjct: 121 ITSRTFAQTVSNIVGSYGLN 140

The following BLAST results are available for this feature:

BLAST of IVF0005651.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54CU7	4.3e-34	48.92	Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium dis...	[more]
Q5M8X5	6.9e-32	49.26	Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicali...	[more]
B2RYU6	1.2e-31	48.53	Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus...	[more]
Q9JME7	1.5e-31	48.53	Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=1...	[more]
A6H7F7	4.5e-31	48.53	Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=991...	[more]

BLAST of IVF0005651.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q0	4.0e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1	[more]
A0A1S3BJH9	4.0e-75	100.00	trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3...	[more]
A0A6J1JPT4	9.0e-75	99.30	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1ERA2	9.0e-75	99.30	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1C584	5.8e-74	97.20	trafficking protein particle complex subunit 2-like protein OS=Momordica charant...	[more]

BLAST of IVF0005651.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144858.1	1.42e-98	100.00	trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >X...	[more]
XP_022928280.1	4.07e-98	99.30	trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]...	[more]
XP_022136317.1	4.76e-97	97.20	trafficking protein particle complex subunit 2-like protein [Momordica charantia...	[more]
XP_031127945.1	3.11e-95	96.48	trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]	[more]
XP_023872854.1	6.50e-95	96.48	trafficking protein particle complex subunit 2-like protein [Quercus suber]	[more]

BLAST of IVF0005651.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20930.1	5.6e-69	87.14	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 7..135 e-value: 4.3E-34 score: 117.4
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2	coord: 1..138
None	No IPR available	GENE3D	3.30.450.70		coord: 1..140 e-value: 5.7E-45 score: 154.3
None	No IPR available	PANTHER	PTHR12403:SF26	BNAA06G40850D PROTEIN	coord: 1..138
IPR044760	Trafficking protein particle complex subunit 2-like	CDD	cd14854	TRAPPC2L	coord: 3..134 e-value: 5.17609E-69 score: 202.435
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 2..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0005651	IVF0005651	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005651.1-exon	IVF0005651.1-exon-chr01:15033806..15034225	exon
IVF0005651.1-exon	IVF0005651.1-exon-chr01:15035439..15035520	exon
IVF0005651.1-exon	IVF0005651.1-exon-chr01:15035611..15035689	exon
IVF0005651.1-exon	IVF0005651.1-exon-chr01:15035847..15035943	exon
IVF0005651.1-exon	IVF0005651.1-exon-chr01:15036050..15036269	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005651.1-three_prime_utr	IVF0005651.1-three_prime_utr-chr01:15033806..15034084	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005651.1-cds	IVF0005651.1-cds-chr01:15034085..15034225	CDS
IVF0005651.1-cds	IVF0005651.1-cds-chr01:15035439..15035520	CDS
IVF0005651.1-cds	IVF0005651.1-cds-chr01:15035611..15035689	CDS
IVF0005651.1-cds	IVF0005651.1-cds-chr01:15035847..15035943	CDS
IVF0005651.1-cds	IVF0005651.1-cds-chr01:15036050..15036082	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005651.1-five_prime_utr	IVF0005651.1-five_prime_utr-chr01:15036083..15036269	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0005651.1	IVF0005651.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030008	TRAPP complex