IVF0005574.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0005574.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	myb family transcription factor PHL5-like
Location	chr04: 23481971 .. 23483127 (-)
Sequence length	666
RNA-Seq Expression	IVF0005574.1
Synteny	IVF0005574.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGATGATGAATGAGTACAATGAGTTTTGTCCACTCTCCTATTTGGATTCCCCATTTCATGATTTTTATGTCTTTGAAGGATGTCGAACTTTTTCAGAGGTTGATTCTTCATTTGCACCCTCCAACATTAATGATCATCAGCATCACTTTCATATCTCGTCTTCTTCTTTTCATTCACCAAATCCTCAAGCAGCTCAACATCAATCAAGCTGTTCCCAAGAGTTTGATGGTGAGCATTGTTCTTGGTCATGTGAGGAGTTGAGGCCAAATCACAACAAAAAGGTCAGTCTATAAAAGTACTTAGCTTCTTCTTGATTTTCATTCCAAAAAGCTGTGTTGATAAAGCTGATTTTTTTTTCTTTTAGTTTAACTTACTTTGTTTTTGTACTTTTAGCTACGTACAAAATGTTCGTTTTGATTTACTTACGTAAAAAATTGACCATTTTGATTTCTATATTGAAATGAATATAAAAATGAATGGACTAAAATAGTCACTTTTCAAAAGTACACATGAACGCACTGTACTTTCAAAAAGTTGATTTTGGTTTATGTACGTTAAAAAGTAACCATTTTGGTTCCACTTTGAAACAATTAAAGAAAAATAAGATGAAAACAGGAATAAATCAGCAAAAGTACAAAGATAGAAGTAAGGGTAAGAGTACTAAAGCCAACTAAAGTAGTATTTACAGTTATTTTTGTTCTTGTTCACGTGCAGTTAAAATCGAGTATGGTTTCTAAGACACGAATTAAATGGACAGAACAACTTCACCAAAAGTTCATCAATTGCGTCGATCAGCTCGGAGGCGCACAAAGTAAGTAATGTAATTGTAAACGATCAAAAGATGTTTTGGCCATCTGAGAATTAGTAACCCAGTGTTTGTTGCAAAAGTGCAGAAGCCACACCAAAGCAACTCCTTCACTTAATGAAAACTAAAGGATTGACTCTCATCCATATAAAAAGCCACTTACAGGTTTGCTATGCACTAAAAGTTAACAACATTTCACTCTCAGTTTGTCATTCTTTTGACTTGGATTTTGATCGAATCTTTTTTTTCCTTTTCAGAAATATCGAATTTCCCAGCAGATTCAAGAACTTTCAAAAGGTGTATGTTCTTGTTCTAATCCTAAACTCTATCAAACTAGAAATGTAA

mRNA sequence

ATGAAGTTGATGATGAATGAGTACAATGAGTTTTGTCCACTCTCCTATTTGGATTCCCCATTTCATGATTTTTATGTCTTTGAAGGATGTCGAACTTTTTCAGAGGTTGATTCTTCATTTGCACCCTCCAACATTAATGATCATCAGCATCACTTTCATATCTCGTCTTCTTCTTTTCATTCACCAAATCCTCAAGCAGCTCAACATCAATCAAGCTGTTCCCAAGAGTTTGATGGTGAGCATTGTTCTTGGTCATGTGAGGAGTTGAGGCCAAATCACAACAAAAAGTTAAAATCGAGTATGGTTTCTAAGACACGAATTAAATGGACAGAACAACTTCACCAAAAGTTCATCAATTGCGTCGATCAGCTCGGAGGCGCACAAAGTAATGTTTGTTGCAAAAGTGCAGAAGCCACACCAAAGCAACTCCTTCACTTAATGAAAACTAAAGGATTGACTCTCATCCATATAAAAAGCCACTTACAGGTTTGCTATGCACTAAAAGTTAACAACATTTCACTCTCAGTTTGTCATTCTTTTGACTTGGATTTTGATCGAATCTTTTTTTTCCTTTTCAGAAATATCGAATTTCCCAGCAGATTCAAGAACTTTCAAAAGGTGTATGTTCTTGTTCTAATCCTAAACTCTATCAAACTAGAAATGTAA

Coding sequence (CDS)

ATGAAGTTGATGATGAATGAGTACAATGAGTTTTGTCCACTCTCCTATTTGGATTCCCCATTTCATGATTTTTATGTCTTTGAAGGATGTCGAACTTTTTCAGAGGTTGATTCTTCATTTGCACCCTCCAACATTAATGATCATCAGCATCACTTTCATATCTCGTCTTCTTCTTTTCATTCACCAAATCCTCAAGCAGCTCAACATCAATCAAGCTGTTCCCAAGAGTTTGATGGTGAGCATTGTTCTTGGTCATGTGAGGAGTTGAGGCCAAATCACAACAAAAAGTTAAAATCGAGTATGGTTTCTAAGACACGAATTAAATGGACAGAACAACTTCACCAAAAGTTCATCAATTGCGTCGATCAGCTCGGAGGCGCACAAAGTAATGTTTGTTGCAAAAGTGCAGAAGCCACACCAAAGCAACTCCTTCACTTAATGAAAACTAAAGGATTGACTCTCATCCATATAAAAAGCCACTTACAGGTTTGCTATGCACTAAAAGTTAACAACATTTCACTCTCAGTTTGTCATTCTTTTGACTTGGATTTTGATCGAATCTTTTTTTTCCTTTTCAGAAATATCGAATTTCCCAGCAGATTCAAGAACTTTCAAAAGGTGTATGTTCTTGTTCTAATCCTAAACTCTATCAAACTAGAAATGTAA

Protein sequence

MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFHSPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQVCYALKVNNISLSVCHSFDLDFDRIFFFLFRNIEFPSRFKNFQKVYVLVLILNSIKLEM

Homology

[Close]

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot
Match: Q0WVU3 (Myb family transcription factor PHL5 OS=Arabidopsis thaliana OX=3702 GN=PHL5 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 55  SSSSFHSPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLH 114
           S+S+    N  ++QHQ   S      H  +S       H   +  + V+KTRI+WT+ LH
Sbjct: 149 SNSNVTHLNFTSSQHQPKQS------HPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQDLH 208

Query: 115 QKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           +KF+ CV++LGGA         +ATPK +L  M + GLT+ H+KSHLQ
Sbjct: 209 EKFVECVNRLGGAD--------KATPKAILKRMDSDGLTIFHVKSHLQ 242

[Close]

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot
Match: Q8GXC2 (Myb family transcription factor PHL4 OS=Arabidopsis thaliana OX=3702 GN=PHL4 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 85  SCEELRP----------NHNKKLKSSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCK 144
           SC ELRP          N++    ++  +K R++WT +LH+ F++ V+QLGG        
Sbjct: 202 SCVELRPLDRTVSSNSNNNSNSNNAAAAAKGRMRWTPELHEVFVDAVNQLGG-------- 261

Query: 145 SAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           S EATPK +L  MK +GLT+ H+KSHLQ
Sbjct: 262 SNEATPKGVLKHMKVEGLTIFHVKSHLQ 281

[Close]

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot
Match: F4J3P7 (Myb family transcription factor PHL13 OS=Arabidopsis thaliana OX=3702 GN=PHL13 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 99  SSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIK 158
           SSM SK R++WT +LH+ F+  ++QLGG        S  ATPK +L L+ + GLT+ H+K
Sbjct: 233 SSMTSKQRMRWTPELHEAFVEAINQLGG--------SERATPKAVLKLINSPGLTVYHVK 288

Query: 159 SHLQ 163
           SHLQ
Sbjct: 293 SHLQ 288

[Close]

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot
Match: Q8VYI2 (Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-09
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 85  SCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLL 144
           S EE+R + +  L  +   K R++WT +LH++F++ V  LGG +        +ATPK ++
Sbjct: 4   SREEIRDDSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPE--------KATPKTIM 63

Query: 145 HLMKTKGLTLIHIKSHLQ 163
            +M  KGLTL H+KSHLQ
Sbjct: 64  RVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot
Match: Q9SJW0 (Myb family transcription factor PHL7 OS=Arabidopsis thaliana OX=3702 GN=PHL7 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 99  SSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIK 158
           SS  SK R++WT +LH++F++ V QLGG           ATPK +L +M  +GLT+ H+K
Sbjct: 10  SSHASKQRLRWTHELHERFVDAVAQLGGPD--------RATPKGVLRVMGVQGLTIYHVK 65

Query: 159 SHLQ 163
           SHLQ
Sbjct: 70  SHLQ 65

[Close]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL
Match: A0A0A0LEY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G702590 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-82
Identity = 166/213 (77.93%), Postives = 179/213 (84.04%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEY EFCPLSYLDSPFHDFYVFEGC+TFSEV+SSFA SN ND  HHF I SSSFH
Sbjct: 1   MKLMMNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTNDRHHHFLI-SSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRP-NHNKKLKSSMVSKTRIKWTEQLHQKFIN 120
           SPNPQ AQHQS+CSQEFDGE+CSWSCEEL P N NKKLKSS+VSKTRIKWTE+LHQ+F N
Sbjct: 61  SPNPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSSIVSKTRIKWTEELHQRFTN 120

Query: 121 CVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ--VCYALKVNNISLSVC 180
           CVDQLGGAQ  V   SAEATPKQL HLMKTKGLTLIHIKSHLQ  VCYA+KVNNISLSVC
Sbjct: 121 CVDQLGGAQMFVA--SAEATPKQLFHLMKTKGLTLIHIKSHLQVCVCYAVKVNNISLSVC 180

Query: 181 HSFDLDFDRIFFFLFRNIEFPSRFKNFQKVYVL 211
           HSFDL FD+I F L     FP+  + F++   L
Sbjct: 181 HSFDLVFDQILFSLSEISHFPADSRTFKRCIFL 210

[Close]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL
Match: A0A5A7U415 (Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00100 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 153/162 (94.44%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH
Sbjct: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120
           SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC
Sbjct: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120

Query: 121 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           VDQLGGAQ        +ATPKQLLHLMKTKGLTLIHIKSHLQ
Sbjct: 121 VDQLGGAQ--------KATPKQLLHLMKTKGLTLIHIKSHLQ 154

[Close]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL
Match: A0A5D3CJQ9 (Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00080 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 153/162 (94.44%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH
Sbjct: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120
           SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC
Sbjct: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120

Query: 121 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           VDQLGGAQ        +ATPKQLLHLMKTKGLTLIHIKSHLQ
Sbjct: 121 VDQLGGAQ--------KATPKQLLHLMKTKGLTLIHIKSHLQ 154

[Close]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL
Match: A0A6J1F3G0 (myb family transcription factor PHL5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441832 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 104/162 (64.20%), Postives = 116/162 (71.60%), Query Frame = 0


Query: 2   KLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFHS 61
           +L+M++ N  C LSYL SP  DFYVFEGC TFSE +SSF  SN  D Q H H SS +F S
Sbjct: 4   QLLMSDCNGLCQLSYLGSPLLDFYVFEGCETFSEAESSFVSSNTEDDQPHLHFSSFAFDS 63

Query: 62  PNPQA-AQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 121
              Q  AQ QSSC  EF G+ CSWS EEL  N NKK KS + SK RIKWTE+LHQKF+NC
Sbjct: 64  SKHQGEAQEQSSCCHEFSGD-CSWSWEELMGNENKKSKSRIGSKKRIKWTEELHQKFMNC 123

Query: 122 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           VDQLGG Q        +ATPKQLLHLMKT+GLTLIHIKSHLQ
Sbjct: 124 VDQLGGTQ--------KATPKQLLHLMKTEGLTLIHIKSHLQ 156

[Close]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL
Match: A0A6J1J569 (myb family transcription factor PHL5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481412 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 100/152 (65.79%), Postives = 109/152 (71.71%), Query Frame = 0


Query: 14  LSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFHSPNPQA-AQHQSS 73
           LSYL SP  DFYVFEGC TFSE +SSF  SN  D QHH   SS +F S   Q  AQ QSS
Sbjct: 20  LSYLGSPLLDFYVFEGCETFSEAESSFVSSNTEDDQHHLPFSSFTFDSSKHQGEAQEQSS 79

Query: 74  CSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVC 133
           C QE +G+ CSWS EEL  N NKK KS +  K RIKWTE+LHQKF+NCVDQLGG Q    
Sbjct: 80  CCQELNGD-CSWSWEELMGNENKKSKSRIGWKKRIKWTEELHQKFMNCVDQLGGTQ---- 139

Query: 134 CKSAEATPKQLLHLMKTKGLTLIHIKSHLQVC 165
               +ATPKQLLHLMKT+GLTLIHIKSHLQ C
Sbjct: 140 ----KATPKQLLHLMKTEGLTLIHIKSHLQKC 162

[Close]

BLAST of IVF0005574.1 vs. NCBI nr
Match: TYK10646.1 (protein PHR1-LIKE 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 1.93e-104
Identity = 153/162 (94.44%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH
Sbjct: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120
           SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC
Sbjct: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120

Query: 121 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 162
           VDQLGGAQ        +ATPKQLLHLMKTKGLTLIHIKSHLQ
Sbjct: 121 VDQLGGAQ--------KATPKQLLHLMKTKGLTLIHIKSHLQ 154

[Close]

BLAST of IVF0005574.1 vs. NCBI nr
Match: KAA0048301.1 (protein PHR1-LIKE 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 2.00e-104
Identity = 153/162 (94.44%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH
Sbjct: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120
           SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC
Sbjct: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120

Query: 121 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 162
           VDQLGGAQ        +ATPKQLLHLMKTKGLTLIHIKSHLQ
Sbjct: 121 VDQLGGAQ--------KATPKQLLHLMKTKGLTLIHIKSHLQ 154

[Close]

BLAST of IVF0005574.1 vs. NCBI nr
Match: KAE8650941.1 (hypothetical protein Csa_001106 [Cucumis sativus])

HSP 1 Score: 261 bits (668), Expect = 7.26e-85
Identity = 134/163 (82.21%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEY EFCPLSYLDSPFHDFYVFEGC+TFSEV+SSFA SN ND  HHF ISSS FH
Sbjct: 1   MKLMMNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTNDRHHHFLISSS-FH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRP-NHNKKLKSSMVSKTRIKWTEQLHQKFIN 120
           SPNPQ AQHQS+CSQEFDGE+CSWSCEEL P N NKKLKSS+VSKTRIKWTE+LHQ+F N
Sbjct: 61  SPNPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSSIVSKTRIKWTEELHQRFTN 120

Query: 121 CVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 162
           CVDQLGGAQ        +ATPKQL HLMKTKGLTLIHIKSHLQ
Sbjct: 121 CVDQLGGAQ--------KATPKQLFHLMKTKGLTLIHIKSHLQ 154

[Close]

BLAST of IVF0005574.1 vs. NCBI nr
Match: XP_011652834.2 (myb family transcription factor PHL5 [Cucumis sativus])

HSP 1 Score: 261 bits (668), Expect = 2.61e-84
Identity = 134/163 (82.21%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           MKLMMNEY EFCPLSYLDSPFHDFYVFEGC+TFSEV+SSFA SN ND  HHF ISSS FH
Sbjct: 40  MKLMMNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTNDRHHHFLISSS-FH 99

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRP-NHNKKLKSSMVSKTRIKWTEQLHQKFIN 120
           SPNPQ AQHQS+CSQEFDGE+CSWSCEEL P N NKKLKSS+VSKTRIKWTE+LHQ+F N
Sbjct: 100 SPNPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSSIVSKTRIKWTEELHQRFTN 159

Query: 121 CVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 162
           CVDQLGGAQ        +ATPKQL HLMKTKGLTLIHIKSHLQ
Sbjct: 160 CVDQLGGAQ--------KATPKQLFHLMKTKGLTLIHIKSHLQ 193

[Close]

BLAST of IVF0005574.1 vs. NCBI nr
Match: XP_038904770.1 (myb family transcription factor PHL5-like isoform X2 [Benincasa hispida])

HSP 1 Score: 222 bits (565), Expect = 3.18e-69
Identity = 119/162 (73.46%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 1   MKLMMNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDHQHHFHISSSSFH 60
           M LMMN+ N F PLSYLDSPFHDFYVFEG +TF E +SSFA SN NDH  HFHISSSSFH
Sbjct: 1   MNLMMNDNNGFYPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDH--HFHISSSSFH 60

Query: 61  SPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLHQKFINC 120
           S NPQ  QHQSS SQE +G+HCS SCEEL    NKK KS +VSKTRIKW+++LHQKFI+C
Sbjct: 61  SLNPQEDQHQSSYSQESNGDHCSLSCEELMQCDNKKSKSRIVSKTRIKWSKELHQKFIDC 120

Query: 121 VDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 162
           VDQLGGAQ        +ATPKQL HLMKTKGLTLIHIKSHLQ
Sbjct: 121 VDQLGGAQ--------KATPKQLFHLMKTKGLTLIHIKSHLQ 152

[Close]

BLAST of IVF0005574.1 vs. TAIR 10
Match: AT5G06800.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 55  SSSSFHSPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLH 114
           S+S+    N  ++QHQ   S      H  +S       H   +  + V+KTRI+WT+ LH
Sbjct: 149 SNSNVTHLNFTSSQHQPKQS------HPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQDLH 208

Query: 115 QKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           +KF+ CV++LGGA         +ATPK +L  M + GLT+ H+KSHLQ
Sbjct: 209 EKFVECVNRLGGAD--------KATPKAILKRMDSDGLTIFHVKSHLQ 242

[Close]

BLAST of IVF0005574.1 vs. TAIR 10
Match: AT5G06800.2 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 55  SSSSFHSPNPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKKLKSSMVSKTRIKWTEQLH 114
           S+S+    N  ++QHQ   S      H  +S       H   +  + V+KTRI+WT+ LH
Sbjct: 149 SNSNVTHLNFTSSQHQPKQS------HPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQDLH 208

Query: 115 QKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           +KF+ CV++LGGA         +ATPK +L  M + GLT+ H+KSHLQ
Sbjct: 209 EKFVECVNRLGGAD--------KATPKAILKRMDSDGLTIFHVKSHLQ 242

[Close]

BLAST of IVF0005574.1 vs. TAIR 10
Match: AT2G20400.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-11
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 85  SCEELRP----------NHNKKLKSSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCK 144
           SC ELRP          N++    ++  +K R++WT +LH+ F++ V+QLGG        
Sbjct: 202 SCVELRPLDRTVSSNSNNNSNSNNAAAAAKGRMRWTPELHEVFVDAVNQLGG-------- 261

Query: 145 SAEATPKQLLHLMKTKGLTLIHIKSHLQ 163
           S EATPK +L  MK +GLT+ H+KSHLQ
Sbjct: 262 SNEATPKGVLKHMKVEGLTIFHVKSHLQ 281

[Close]

BLAST of IVF0005574.1 vs. TAIR 10
Match: AT3G04450.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 99  SSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIK 158
           SSM SK R++WT +LH+ F+  ++QLGG        S  ATPK +L L+ + GLT+ H+K
Sbjct: 233 SSMTSKQRMRWTPELHEAFVEAINQLGG--------SERATPKAVLKLINSPGLTVYHVK 288

Query: 159 SHLQ 163
           SHLQ
Sbjct: 293 SHLQ 288

[Close]

BLAST of IVF0005574.1 vs. TAIR 10
Match: AT3G04450.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 99  SSMVSKTRIKWTEQLHQKFINCVDQLGGAQSNVCCKSAEATPKQLLHLMKTKGLTLIHIK 158
           SSM SK R++WT +LH+ F+  ++QLGG        S  ATPK +L L+ + GLT+ H+K
Sbjct: 193 SSMTSKQRMRWTPELHEAFVEAINQLGG--------SERATPKAVLKLINSPGLTVYHVK 248

Query: 159 SHLQ 163
           SHLQ
Sbjct: 253 SHLQ 248

The following BLAST results are available for this feature:

BLAST of IVF0005574.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVU3	1.8e-10	38.89	Myb family transcription factor PHL5 OS=Arabidopsis thaliana OX=3702 GN=PHL5 PE=...	[more]
Q8GXC2	2.3e-10	42.05	Myb family transcription factor PHL4 OS=Arabidopsis thaliana OX=3702 GN=PHL4 PE=...	[more]
F4J3P7	1.2e-09	48.44	Myb family transcription factor PHL13 OS=Arabidopsis thaliana OX=3702 GN=PHL13 P...	[more]
Q8VYI2	3.4e-09	41.03	Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 P...	[more]
Q9SJW0	5.7e-09	46.88	Myb family transcription factor PHL7 OS=Arabidopsis thaliana OX=3702 GN=PHL7 PE=...	[more]

BLAST of IVF0005574.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEY1	1.1e-82	77.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G702590 PE=4 SV=1	[more]
A0A5A7U415	1.5e-81	94.44	Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CJQ9	1.5e-81	94.44	Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1F3G0	1.1e-44	64.20	myb family transcription factor PHL5-like isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1J569	1.2e-41	65.79	myb family transcription factor PHL5-like isoform X2 OS=Cucurbita maxima OX=3661...	[more]

BLAST of IVF0005574.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10646.1	1.93e-104	94.44	protein PHR1-LIKE 1-like [Cucumis melo var. makuwa]	[more]
KAA0048301.1	2.00e-104	94.44	protein PHR1-LIKE 1-like [Cucumis melo var. makuwa]	[more]
KAE8650941.1	7.26e-85	82.21	hypothetical protein Csa_001106 [Cucumis sativus]	[more]
XP_011652834.2	2.61e-84	82.21	myb family transcription factor PHL5 [Cucumis sativus]	[more]
XP_038904770.1	3.18e-69	73.46	myb family transcription factor PHL5-like isoform X2 [Benincasa hispida]	[more]

BLAST of IVF0005574.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06800.1	1.3e-11	38.89	myb-like HTH transcriptional regulator family protein	[more]
AT5G06800.2	1.3e-11	38.89	myb-like HTH transcriptional regulator family protein	[more]
AT2G20400.1	1.6e-11	42.05	myb-like HTH transcriptional regulator family protein	[more]
AT3G04450.1	8.2e-11	48.44	Homeodomain-like superfamily protein	[more]
AT3G04450.2	8.2e-11	48.44	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 103..168 e-value: 7.4E-20 score: 72.8
None	No IPR available	PANTHER	PTHR31499:SF61	MYR1	coord: 80..162
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 104..164 e-value: 7.5E-17 score: 59.4
IPR044848	PHR1-like	PANTHER	PTHR31499	MYB FAMILY TRANSCRIPTION FACTOR PHL11	coord: 80..162
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 102..164

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0005574	IVF0005574	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005574.1-exon	IVF0005574.1-exon-chr04:23481971..23482247	exon
IVF0005574.1-exon	IVF0005574.1-exon-chr04:23482306..23482406	exon
IVF0005574.1-exon	IVF0005574.1-exon-chr04:23482840..23483127	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005574.1-cds	IVF0005574.1-cds-chr04:23481971..23482247	CDS
IVF0005574.1-cds	IVF0005574.1-cds-chr04:23482306..23482406	CDS
IVF0005574.1-cds	IVF0005574.1-cds-chr04:23482840..23483127	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0005574.1	IVF0005574.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity