IVF0004238.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0004238.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Peptidylprolyl isomerase
Location	chr04: 21781453 .. 21781614 (+)
Sequence length	162
RNA-Seq Expression	IVF0004238.1
Synteny	IVF0004238.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTATCAACAGTGGAAAAGGGTGAAAATACAGTTTTCACGATACCCTTAGAATTGGCCTATGGAGAGTTCAACTCTCCGCCAACAATTCCACTGAACGCTACTCTCCAATTTGATGTTGAGCTACTTTCATGGCATAGCGTCAAAGACATCTGTTAA

mRNA sequence

ATGAAGGTATCAACAGTGGAAAAGGGTGAAAATACAGTTTTCACGATACCCTTAGAATTGGCCTATGGAGAGTTCAACTCTCCGCCAACAATTCCACTGAACGCTACTCTCCAATTTGATGTTGAGCTACTTTCATGGCATAGCGTCAAAGACATCTGTTAA

Coding sequence (CDS)

ATGAAGGTATCAACAGTGGAAAAGGGTGAAAATACAGTTTTCACGATACCCTTAGAATTGGCCTATGGAGAGTTCAACTCTCCGCCAACAATTCCACTGAACGCTACTCTCCAATTTGATGTTGAGCTACTTTCATGGCATAGCGTCAAAGACATCTGTTAA

Protein sequence

MKVSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC

Homology

[Close]

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot
Match: Q38931 (Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana OX=3702 GN=FKBP62 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-17
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELL W SVKDIC
Sbjct: 101 IKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDIC 151

[Close]

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot
Match: Q9FJL3 (Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVEL++W SVKDIC
Sbjct: 109 IKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSVKDIC 159

[Close]

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot
Match: Q43207 (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.5e-16
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDI 53
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVELLSW SV+DI
Sbjct: 104 IKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDI 153

[Close]

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot
Match: Q54NB6 (FK506-binding protein 4 OS=Dictyostelium discoideum OX=44689 GN=fkbp4 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-05
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLS 46
           V++++ G     TIP +LAYG   +PP+IP NATL FDVEL+S
Sbjct: 319 VASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVS 361

[Close]

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot
Match: P0C1J6 (FK506-binding protein 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) OX=246409 GN=FKBP4 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-04
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLS 46
           ++ ++ G     TIP  LAYG+  +PP IP NATL FDV+LLS
Sbjct: 338 IAGMKAGGERKLTIPAPLAYGKRGAPPDIPKNATLVFDVKLLS 380

[Close]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL
Match: A0A6J1C818 (Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111009228 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELLSWHSVKDIC
Sbjct: 103 IKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDIC 153

[Close]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL
Match: A0A0A0L633 (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-16
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELLSWHSVKDIC
Sbjct: 103 IRTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDIC 153

[Close]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL
Match: A0A5A7VJU8 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00110 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVELLSWHSVKDIC
Sbjct: 103 IRTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDIC 153

[Close]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL
Match: A0A1S3AXS5 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVELLSWHSVKDIC
Sbjct: 103 IRTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDIC 153

[Close]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL
Match: A0A3P6EMT7 (Peptidylprolyl isomerase OS=Brassica oleracea OX=3712 GN=BOLC7T44446H PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MKVSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           M + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELLSW SVKDIC
Sbjct: 100 MGIKTMKKGENAVFTIPPELAYGETGSPPTIPANATLQFDVELLSWRSVKDIC 152

[Close]

BLAST of IVF0004238.1 vs. NCBI nr
Match: MBA0827594.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 88.6 bits (218), Expect = 2.21e-21
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3  VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 53
          + T++KGEN +FTIP ELAYGE+ SPPTIP NATLQFDVEL+SW SVKDIC
Sbjct: 16 IKTMKKGENAIFTIPPELAYGEYGSPPTIPPNATLQFDVELISWTSVKDIC 66

[Close]

BLAST of IVF0004238.1 vs. NCBI nr
Match: MBA0830723.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 85.1 bits (209), Expect = 3.30e-20
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 6  VEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 53
          ++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVELLSW SVKDIC
Sbjct: 1  MKKGENAIFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC 48

[Close]

BLAST of IVF0004238.1 vs. NCBI nr
Match: MBA0741683.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 87.4 bits (215), Expect = 6.27e-20
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 53
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVELLSW SVKDIC
Sbjct: 98  IKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC 148

[Close]

BLAST of IVF0004238.1 vs. NCBI nr
Match: XP_022137935.1 (70 kDa peptidyl-prolyl isomerase-like [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 7.77e-20
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 53
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELLSWHSVKDIC
Sbjct: 103 IKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDIC 153

[Close]

BLAST of IVF0004238.1 vs. NCBI nr
Match: CDY15104.1 (BnaC03g44650D [Brassica napus])

HSP 1 Score: 89.4 bits (220), Expect = 8.65e-20
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 53
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELLSW SVKDIC
Sbjct: 101 IKTMKKGENAVFTIPSELAYGESGSPPTIPANATLQFDVELLSWSSVKDIC 151

[Close]

BLAST of IVF0004238.1 vs. TAIR 10
Match: AT3G25230.1 (rotamase FKBP 1 )

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELL W SVKDIC
Sbjct: 101 IKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDIC 151

[Close]

BLAST of IVF0004238.1 vs. TAIR 10
Match: AT3G25230.2 (rotamase FKBP 1 )

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN VFTIP ELAYGE  SPPTIP NATLQFDVELL W SVKDIC
Sbjct: 101 IKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDIC 151

[Close]

BLAST of IVF0004238.1 vs. TAIR 10
Match: AT5G48570.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-18
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   VSTVEKGENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLSWHSVKDIC 54
           + T++KGEN +FTIP ELAYGE  SPPTIP NATLQFDVEL++W SVKDIC
Sbjct: 109 IKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSVKDIC 159

[Close]

BLAST of IVF0004238.1 vs. TAIR 10
Match: AT5G48580.1 (FK506- and rapamycin-binding protein 15 kD-2 )

HSP 1 Score: 44.7 bits (104), Expect = 2.7e-05
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 9   GENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLS 46
           GE     IP +L YGE  SPPTIP  ATL FD EL++
Sbjct: 102 GEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELIA 138

[Close]

BLAST of IVF0004238.1 vs. TAIR 10
Match: AT3G25220.1 (FK506-binding protein 15 kD-1 )

HSP 1 Score: 40.4 bits (93), Expect = 5.2e-04
Identity = 19/37 (51.35%), Postives = 23/37 (62.16%), Query Frame = 0


Query: 9   GENTVFTIPLELAYGEFNSPPTIPLNATLQFDVELLS 46
           GE     IP +L YG+  SPP IP  ATL FD EL++
Sbjct: 102 GEKRKLKIPSKLGYGDNGSPPKIPGGATLIFDTELVA 138

The following BLAST results are available for this feature:

BLAST of IVF0004238.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38931	1.8e-17	78.43	Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana OX=3702 GN=FK...	[more]
Q9FJL3	6.8e-17	74.51	Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FK...	[more]
Q43207	7.5e-16	76.00	70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=...	[more]
Q54NB6	2.7e-05	53.49	FK506-binding protein 4 OS=Dictyostelium discoideum OX=44689 GN=fkbp4 PE=1 SV=1	[more]
P0C1J6	1.3e-04	51.16	FK506-binding protein 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / ...	[more]

BLAST of IVF0004238.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C818	6.0e-16	82.35	Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111009228 PE=4 SV=...	[more]
A0A0A0L633	7.8e-16	82.35	Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1	[more]
A0A5A7VJU8	1.0e-15	80.39	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AXS5	1.0e-15	80.39	Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1	[more]
A0A3P6EMT7	1.3e-15	79.25	Peptidylprolyl isomerase OS=Brassica oleracea OX=3712 GN=BOLC7T44446H PE=4 SV=1	[more]

BLAST of IVF0004238.1 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0827594.1	2.21e-21	76.47	hypothetical protein [Gossypium armourianum]	[more]
MBA0830723.1	3.30e-20	81.25	hypothetical protein [Gossypium armourianum]	[more]
MBA0741683.1	6.27e-20	78.43	hypothetical protein [Gossypium gossypioides]	[more]
XP_022137935.1	7.77e-20	82.35	70 kDa peptidyl-prolyl isomerase-like [Momordica charantia]	[more]
CDY15104.1	8.65e-20	80.39	BnaC03g44650D [Brassica napus]	[more]

BLAST of IVF0004238.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25230.1	1.3e-18	78.43	rotamase FKBP 1	[more]
AT3G25230.2	1.3e-18	78.43	rotamase FKBP 1	[more]
AT5G48570.1	4.8e-18	74.51	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[more]
AT5G48580.1	2.7e-05	56.76	FK506- and rapamycin-binding protein 15 kD-2	[more]
AT3G25220.1	5.2e-04	51.35	FK506-binding protein 15 kD-1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.50.40		coord: 1..52 e-value: 3.5E-13 score: 51.6
None	No IPR available	PANTHER	PTHR10516	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 3..53
None	No IPR available	PANTHER	PTHR10516:SF432	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP62	coord: 3..53
None	No IPR available	SUPERFAMILY	54534	FKBP-like	coord: 3..51
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00254	FKBP_C	coord: 3..44 e-value: 1.1E-8 score: 35.3
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PROSITE	PS50059	FKBP_PPIASE	coord: 1..47 score: 12.013668

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0004238	IVF0004238	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004238.1-exon	IVF0004238.1-exon-chr04:21781453..21781614	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004238.1-cds	IVF0004238.1-cds-chr04:21781453..21781614	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0004238.1	IVF0004238.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity