IVF0004138.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0004138.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S30
Location	chr10: 21889249 .. 21889574 (-)
Sequence length	231
RNA-Seq Expression	IVF0004138.2
Synteny	IVF0004138.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCTGATTTATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCATGGATCTTCAGCTCGTGCCGATAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACATGCTCACAAACGGATGCAATACAACCGTAGATTCGTAACTGCCGGTATGTGTTTATTCTCGCAATTTTCTCTCCCTCTCTCTGATATTATATTCATGTTTCTTGTTTTTTTTTTTATGAATTTTAATTTCCGCTTGTAGTTGTTGGTTTCAGCAAGAAGAGAGGACCAAAGTCGTTCGAGAAGTAA

mRNA sequence

ATGTTCCTGATTTATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCATGGATCTTCAGCTCGTGCCGATAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACATGCTCACAAACGGATGCAATACAACCGTAGATTCGTAACTGCCGTTGTTGGTTTCAGCAAGAAGAGAGGACCAAAGTCGTTCGAGAAGTAA

Coding sequence (CDS)

ATGTTCCTGATTTATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCATGGATCTTCAGCTCGTGCCGATAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACATGCTCACAAACGGATGCAATACAACCGTAGATTCGTAACTGCCGTTGTTGGTTTCAGCAAGAAGAGAGGACCAAAGTCGTTCGAGAAGTAA

Protein sequence

MFLIYLFLHLCNLHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFEK

Homology

[Close]

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKR+Q+NRRFVTAVVGF KKRGP S E
Sbjct: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 76 K 77
          K
Sbjct: 62 K 62

[Close]

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 17 KVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKS 74
          KVHGS ARA KVRGQTPKVAKQ+KKKK  G A +RMQYNRRFV  V  F KK+GP +
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNA 57

[Close]

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 17 KVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKS 74
          KVHGS ARA KVRGQTPKVAKQ+KKKK  G A +RMQYNRRFV  V  F KK+GP +
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNA 57

[Close]

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 17 KVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKS 74
          KVHGS ARA KVRGQTPKVAKQ+KKKK  G A +RMQYNRRFV  V  F KK+GP +
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNA 57

[Close]

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 17 KVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKS 74
          KVHGS ARA KVRGQTPKVAKQ+KKKK  G A +RMQYNRRFV  V  F KK+GP +
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNA 57

[Close]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL
Match: A0A5A7SNT1 (40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00200 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE
Sbjct: 15 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 74

Query: 76 K 77
          K
Sbjct: 75 K 75

[Close]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL
Match: A0A1S3BVA2 (40S ribosomal protein S30 OS=Cucumis melo OX=3656 GN=LOC103493880 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE
Sbjct: 2  GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 61

Query: 76 K 77
          K
Sbjct: 62 K 62

[Close]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL
Match: A0A444F7Y5 (40S ribosomal protein S30 OS=Ensete ventricosum OX=4639 GN=GW17_00017242 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MFLIYLFLHLCNLHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVT 60
           +FL+  F    NL SGKVHGS ARA KVRGQTPKVAKQDKKKKPRG A+KRMQYNRRFVT
Sbjct: 29  LFLLSSFHCPVNLFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAYKRMQYNRRFVT 88

Query: 61  AVVGFSKKRGPKSFEK 77
           AVVGF KKRGP S EK
Sbjct: 89  AVVGFGKKRGPNSSEK 104

[Close]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL
Match: A0A5N5NRR1 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003471 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 13  LHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPK 72
           L SGKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKRMQYNRRFVTAVVGF KKRGP 
Sbjct: 333 LSSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 392

Query: 73  SFEK 77
           S EK
Sbjct: 393 SSEK 396

[Close]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL
Match: K3Y2S3 (40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 12  NLHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGP 71
           +L +GKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKRMQYNRRFVTAVVGF KKRGP
Sbjct: 74  SLRAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 133

Query: 72  KSFEK 77
            S EK
Sbjct: 134 NSSEK 138

[Close]

BLAST of IVF0004138.2 vs. NCBI nr
Match: XP_008453058.1 (PREDICTED: 40S ribosomal protein S30-like [Cucumis melo])

HSP 1 Score: 122 bits (305), Expect = 1.65e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE
Sbjct: 2  GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 61

[Close]

BLAST of IVF0004138.2 vs. NCBI nr
Match: KAA0032460.1 (40S ribosomal protein S30-like [Cucumis melo var. makuwa] >TYJ99905.1 40S ribosomal protein S30-like [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 2.36e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE
Sbjct: 15 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 74

[Close]

BLAST of IVF0004138.2 vs. NCBI nr
Match: RZR96505.1 (hypothetical protein BHM03_00025534, partial [Ensete ventricosum])

HSP 1 Score: 111 bits (278), Expect = 5.03e-30
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1  MFLIYLFLHLCNLHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVT 60
          +FL+  F    NL SGKVHGS ARA KVRGQTPKVAKQDKKKKPRG A+KRMQYNRRFVT
Sbjct: 17 LFLLSSFHCPVNLFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAYKRMQYNRRFVT 76

Query: 61 AVVGFSKKRGPKSFEK 76
          AVVGF KKRGP S EK
Sbjct: 77 AVVGFGKKRGPNSSEK 92

[Close]

BLAST of IVF0004138.2 vs. NCBI nr
Match: XP_038692446.1 (40S ribosomal protein S30-like [Tripterygium wilfordii])

HSP 1 Score: 110 bits (275), Expect = 6.25e-30
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGS ARA KVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGF KKRGP S E
Sbjct: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFGKKRGPNSSE 61

[Close]

BLAST of IVF0004138.2 vs. NCBI nr
Match: RWW18752.1 (hypothetical protein GW17_00017242 [Ensete ventricosum] >RWW68159.1 hypothetical protein BHE74_00024358 [Ensete ventricosum])

HSP 1 Score: 111 bits (278), Expect = 7.12e-30
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MFLIYLFLHLCNLHSGKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVT 60
           +FL+  F    NL SGKVHGS ARA KVRGQTPKVAKQDKKKKPRG A+KRMQYNRRFVT
Sbjct: 29  LFLLSSFHCPVNLFSGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAYKRMQYNRRFVT 88

Query: 61  AVVGFSKKRGPKSFEK 76
           AVVGF KKRGP S EK
Sbjct: 89  AVVGFGKKRGPNSSEK 104

[Close]

BLAST of IVF0004138.2 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKR+Q+NRRFVTAVVGF KKRGP S E
Sbjct: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 76 K 77
          K
Sbjct: 62 K 62

[Close]

BLAST of IVF0004138.2 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKR+Q+NRRFVTAVVGF KKRGP S E
Sbjct: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 76 K 77
          K
Sbjct: 62 K 62

[Close]

BLAST of IVF0004138.2 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 GKVHGSSARADKVRGQTPKVAKQDKKKKPRGHAHKRMQYNRRFVTAVVGFSKKRGPKSFE 75
          GKVHGS ARA KVRGQTPKVAKQDKKKKPRG AHKR+Q+NRRFVTAVVGF KKRGP S E
Sbjct: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSE 61

Query: 76 K 77
          K
Sbjct: 62 K 62

The following BLAST results are available for this feature:

BLAST of IVF0004138.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	2.6e-22	86.89	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	9.1e-15	71.93	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	9.1e-15	71.93	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	9.1e-15	71.93	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	9.1e-15	71.93	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of IVF0004138.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNT1	4.5e-25	100.00	40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BVA2	4.5e-25	100.00	40S ribosomal protein S30 OS=Cucumis melo OX=3656 GN=LOC103493880 PE=3 SV=1	[more]
A0A444F7Y5	1.0e-21	78.95	40S ribosomal protein S30 OS=Ensete ventricosum OX=4639 GN=GW17_00017242 PE=3 SV...	[more]
A0A5N5NRR1	1.8e-21	89.06	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003471 PE=3 SV=1	[more]
K3Y2S3	2.3e-21	86.15	40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1	[more]

BLAST of IVF0004138.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453058.1	1.65e-34	100.00	PREDICTED: 40S ribosomal protein S30-like [Cucumis melo]	[more]
KAA0032460.1	2.36e-34	100.00	40S ribosomal protein S30-like [Cucumis melo var. makuwa] >TYJ99905.1 40S riboso...	[more]
RZR96505.1	5.03e-30	78.95	hypothetical protein BHM03_00025534, partial [Ensete ventricosum]	[more]
XP_038692446.1	6.25e-30	91.80	40S ribosomal protein S30-like [Tripterygium wilfordii]	[more]
RWW18752.1	7.12e-30	78.95	hypothetical protein GW17_00017242 [Ensete ventricosum] >RWW68159.1 hypothetical...	[more]

BLAST of IVF0004138.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	1.9e-23	86.89	Ribosomal protein S30 family protein	[more]
AT4G29390.1	1.9e-23	86.89	Ribosomal protein S30 family protein	[more]
AT5G56670.1	1.9e-23	86.89	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 17..72 e-value: 4.2E-24 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..37
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 10..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0004138	IVF0004138	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004138.2-exon	IVF0004138.2-exon-chr10:21889249..21889295	exon
IVF0004138.2-exon	IVF0004138.2-exon-chr10:21889391..21889574	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0004138.2-cds	IVF0004138.2-cds-chr10:21889249..21889295	CDS
IVF0004138.2-cds	IVF0004138.2-cds-chr10:21889391..21889574	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0004138.2	IVF0004138.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome