IVF0003739.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0003739.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 14939288 .. 14939559 (+)
Sequence length	240
RNA-Seq Expression	IVF0003739.1
Synteny	IVF0003739.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTCCCTTCTTCCCCTTCCTCACGATTTTTCCATTCCTTCCAAAGTTAATCAAGCCTGCCCCCGTCGTCGCACCTCAGCCGATGCCTCATCGTATGCCTCCAATGCTAACTCCAGTCGCAAGCTCAACCAAATCAGACTCCTACTGCTACCGTGATGCTAATTCTAGCCATGCTGCAACATCTGACTCACCCAAATCTGACTCCAGTCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

mRNA sequence

ATGATTTTTCCCTTCTTCCCCTTCCTCACGATTTTTCCATTCCTTCCAAAGTTAATCAAGCCTGCCCCCGTCGTCGCACCTCAGCCGATGCCTCATCGTATGCCTCCAATGCTAACTCCAGTCGCAAGCTCAACCAAATCAGACTCCTACTGCTACCGTGATGCTAATTCTAGCCATGCTTCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

Coding sequence (CDS)

ATGATTTTTCCCTTCTTCCCCTTCCTCACGATTTTTCCATTCCTTCCAAAGTTAATCAAGCCTGCCCCCGTCGTCGCACCTCAGCCGATGCCTCATCGTATGCCTCCAATGCTAACTCCAGTCGCAAGCTCAACCAAATCAGACTCCTACTGCTACCGTGATGCTAATTCTAGCCATGCTTCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGA

Protein sequence

MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHASPPSSPLALISKSHNNIPI

Homology

[Close]

BLAST of IVF0003739.1 vs. ExPASy TrEMBL
Match: A0A5D3BWD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00060 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 72/90 (80.00%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPF TIFPFLPKLI PAP+ APQ MPHRMPPMLTPVASSTKSDSYCYRDANSSHA
Sbjct: 1  MIFPFFPFPTIFPFLPKLITPAPITAPQLMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60

Query: 61 S-----------PPSSPLALISKSHNNIPI 80
          +           PPSSPLALI KSHNNIPI
Sbjct: 61 ATSNAAQIRLQPPPSSPLALICKSHNNIPI 90

[Close]

BLAST of IVF0003739.1 vs. ExPASy TrEMBL
Match: A0A5A7V9W6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold632G00010 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPF TI  FLPKLI  AP+  PQPMPHRMPPMLTPVASSTKSDSYCYRDANSS A
Sbjct: 1  MIFPFFPFPTIVSFLPKLITSAPIDTPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSRA 60

Query: 61 S-----------PPSSPLALISKSHNNIPI 80
          +           PPSSPLALISKSHNNIPI
Sbjct: 61 ATSDAAQIRLQPPPSSPLALISKSHNNIPI 90

[Close]

BLAST of IVF0003739.1 vs. ExPASy TrEMBL
Match: A0A5A7U6M1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00630 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA
Sbjct: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60

Query: 61 SPPSSP 67
          +   SP
Sbjct: 61 ATSDSP 66

[Close]

BLAST of IVF0003739.1 vs. ExPASy TrEMBL
Match: A0A5D3C069 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001210 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-22
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 11 IFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHAS--------- 70
          IFPFLPKLI PAPV APQ MPHRMPPM TP+ASSTKSDSYCYRDANSS A+         
Sbjct: 2  IFPFLPKLIIPAPVAAPQSMPHRMPPMPTPIASSTKSDSYCYRDANSSRAATSDATQIRL 61

Query: 71 --PPSSPLALISKSHNNIPI 80
            PPSSPLALISKSHNNIPI
Sbjct: 62 QPPPSSPLALISKSHNNIPI 81

[Close]

BLAST of IVF0003739.1 vs. ExPASy TrEMBL
Match: A0A5D3CSE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001680 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFF F TIFPFLPK+I  APV APQPMPHRMPPMLTPVASSTKSDSYCYRDANSS  
Sbjct: 1  MIFPFFSFPTIFPFLPKVITLAPVAAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSRT 60

Query: 61 S 62
          +
Sbjct: 61 A 61

[Close]

BLAST of IVF0003739.1 vs. NCBI nr
Match: KAA0033001.1 (uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK03410.1 uncharacterized protein E5676_scaffold121G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 6.33e-38
Identity = 72/90 (80.00%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPF TIFPFLPKLI PAP+ APQ MPHRMPPMLTPVASSTKSDSYCYRDANSSHA
Sbjct: 1  MIFPFFPFPTIFPFLPKLITPAPITAPQLMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60

Query: 61 S-----------PPSSPLALISKSHNNIPI 79
          +           PPSSPLALI KSHNNIPI
Sbjct: 61 ATSNAAQIRLQPPPSSPLALICKSHNNIPI 90

[Close]

BLAST of IVF0003739.1 vs. NCBI nr
Match: KAA0062675.1 (uncharacterized protein E6C27_scaffold1576G00010 [Cucumis melo var. makuwa] >TYK08457.1 uncharacterized protein E5676_scaffold632G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 2.04e-34
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPF TI  FLPKLI  AP+  PQPMPHRMPPMLTPVASSTKSDSYCYRDANSS A
Sbjct: 1  MIFPFFPFPTIVSFLPKLITSAPIDTPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSRA 60

Query: 61 S-----------PPSSPLALISKSHNNIPI 79
          +           PPSSPLALISKSHNNIPI
Sbjct: 61 ATSDAAQIRLQPPPSSPLALISKSHNNIPI 90

[Close]

BLAST of IVF0003739.1 vs. NCBI nr
Match: KAA0050820.1 (uncharacterized protein E6C27_scaffold404G00780 [Cucumis melo var. makuwa] >TYK08525.1 uncharacterized protein E5676_scaffold323G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.01e-34
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60
          MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA
Sbjct: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHA 60

Query: 61 SPPSSP 66
          +   SP
Sbjct: 61 ATSDSP 66

[Close]

BLAST of IVF0003739.1 vs. NCBI nr
Match: KAA0042899.1 (uncharacterized protein E6C27_scaffold44G004160 [Cucumis melo var. makuwa] >TYK05301.1 uncharacterized protein E5676_scaffold108G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 4.15e-30
Identity = 62/80 (77.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 11 IFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSHAS--------- 70
          IFPFLPKLI PAPV APQ MPHRMPPM TP+ASSTKSDSYCYRDANSS A+         
Sbjct: 2  IFPFLPKLIIPAPVAAPQSMPHRMPPMPTPIASSTKSDSYCYRDANSSRAATSDATQIRL 61

Query: 71 --PPSSPLALISKSHNNIPI 79
            PPSSPLALISKSHNNIPI
Sbjct: 62 QPPPSSPLALISKSHNNIPI 81

[Close]

BLAST of IVF0003739.1 vs. NCBI nr
Match: KAA0037112.1 (uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK13964.1 uncharacterized protein E5676_scaffold832G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.55e-25
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MIFPFFPFLTIFPFLPKLIKPAPVVAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSS 58
          MIFPFF F TIFPFLPK+I  APV APQPMPHRMPPMLTPVASSTKSDSYCYRDANSS
Sbjct: 1  MIFPFFSFPTIFPFLPKVITLAPVAAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSS 58

The following BLAST results are available for this feature:

BLAST of IVF0003739.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003739.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWD1	1.0e-27	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V9W6	4.7e-25	76.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U6M1	1.4e-24	93.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C069	8.3e-22	77.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CSE0	4.3e-18	85.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0003739.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033001.1	6.33e-38	80.00	uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0062675.1	2.04e-34	76.67	uncharacterized protein E6C27_scaffold1576G00010 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0050820.1	4.01e-34	93.94	uncharacterized protein E6C27_scaffold404G00780 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0042899.1	4.15e-30	77.50	uncharacterized protein E6C27_scaffold44G004160 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0037112.1	1.55e-25	89.66	uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of IVF0003739.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0003739	IVF0003739	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003739.1-exon	IVF0003739.1-exon-chr04:14939288..14939467	exon
IVF0003739.1-exon	IVF0003739.1-exon-chr04:14939500..14939559	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003739.1-cds	IVF0003739.1-cds-chr04:14939288..14939467	CDS
IVF0003739.1-cds	IVF0003739.1-cds-chr04:14939500..14939559	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0003739.1	IVF0003739.1-protein	polypeptide