IVF0003207.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0003207.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S24
Location	chr05: 24443460 .. 24445068 (-)
Sequence length	819
RNA-Seq Expression	IVF0003207.2
Synteny	IVF0003207.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAATCAGGACTCTCTTGCCGCTTTTCTCTTCGCCGTCGCCTTCTTCGAGCTTCAAGTCTCCCATCCTCTTCAGCCATGGCGGACAAAGCAGTCACCATTCGGACCAGAAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTGAGTCCTTTGTCTCTTCTTTCCGCATTACTTTATGTTTATTGATTCTGCGAGGTTTGATTTTTCTCTTGACATGTTTGTTTTTCTCTTTTCATGTAATTTCTATGTTGGGTTTTGAGTTTGGACTTAGTTTCTGGATTCGGGTGCAGTGCTAGTTTCATTTTATTTGGTGCTGAATAGGGTTCGGTTTTGTATTTGACTTTGAGTTTAGGGTTTTAGTGTTGCTTATGTCATTGAAATGAAAATCACTTTATGGTTAGCGATATATGGTCCTTGGTTGGGTATTTGTTTATAATATTTCTGTTTCGTGATTAATGCAGATCATTGATGTTCTTCACCCTGGCAGACCCAACGTCTCAAAGGTAATCCATTTTTCGTGTTATTTTGTTTCCATGAAGATATCGACTGTTTATAGCATTTTCAAAATCTGTATGAATAATTAACTTTTCAATCTATAGTATTTTTTTCTACACTGGTTCCTTAGTTTCGTGTTGTATTTAATCCCATTTGTATTGAAATTGGGAAATTAATATTTTGTGCCACTTATAATGGAATAGAATAGCACTCATTTGGCATCAATGTTGCTGATAGTTTTTCTTTTGGCGCTCATTATGTTGTATGTTTCTATTTCTTGTTCTTAAGGCTGAGCTGAAAGAGAAGCTGGCCAGAATCTATGATGTGAAAGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACACACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGACTCTGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATGTTACAATCTCCTTTTAACCAAAACATCCATTATTGTGCTCTTAAGATTTGTTTCATGGAATGACATTACTCAAACATGCTTACACTTCATTATCATAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTCAAGAAGGTAATGAATGATTTTGAAATGATAAATCTTCTTGCTTTCATATTAAACATTGCCATTGATTTACATTTTTATATCTTCCTATACAGACCAAGGCTTCAGATGCAGCTAAGGCAGGAAAGAAGAAATAAATTTGCTGGAATTTTGTGCTTATGGGCAAATGATAAACTACCGAATTGTGTTTTTTCTTTTAGTAGAGTCTCTTTTAGCTATCTTCTTACTCTTCAATTAAATTATGTTAATCAGTGATTTGGTTGTTGGTGATTAGTGATATGAAAACTTTAGTTCTTTTGCCAGAGGACAGAATTTTTGACGTTACATTTCCTTCGTTTTCTTTTTGATGTTTTGGTTGACACTTCGACCCATTGAGACTGATCGTTGGTAGATTATGATAATTGATAGATGGGGATAATTCCAAGGCTTTATCAAATTTTCTACTTTTAGTTGTTTGAATCATA

mRNA sequence

AGAAAATCAGGACTCTCTTGCCGCTTTTCTCTTCGCCGTCGCCTTCTTCGAGCTTCAAGTCTCCCATCCTCTTCAGCCATGGCGGACAAAGCAGTCACCATTCGGACCAGAAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCTGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGCCAGAATCTATGATGTGAAAGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACACACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGACTCTGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTCAAGAAGACCAAGGCTTCAGATGCAGCTAAGGCAGGAAAGAAGAAATAAATTTGCTGGAATTTTGTGCTTATGGGCAAATGATAAACTACCGAATTGTGTTTTTTCTTTTAGTAGAGTCTCTTTTAGCTATCTTCTTACTCTTCAATTAAATTATGTTAATCAGTGATTTGGTTGTTGGTGATTAGTGATATGAAAACTTTAGTTCTTTTGCCAGAGGACAGAATTTTTGACGTTACATTTCCTTCGTTTTCTTTTTGATGTTTTGGTTGACACTTCGACCCATTGAGACTGATCGTTGGTAGATTATGATAATTGATAGATGGGGATAATTCCAAGGCTTTATCAAATTTTCTACTTTTAGTTGTTTGAATCATA

Coding sequence (CDS)

ATGGCGGACAAAGCAGTCACCATTCGGACCAGAAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCATCATTGATGTTCTTCACCCTGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGCCAGAATCTATGATGTGAAAGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACACACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGACTCTGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTCAAGAAGACCAAGGCTTCAGATGCAGCTAAGGCAGGAAAGAAGAAATAA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 6.4e-59
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-39
Identity = 84/132 (63.64%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ + DVLHPG+P VSK E++EKLA++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-37
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-37
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL
Match: A0A5D3D4C1 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001230 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.3e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL
Match: E5GBS0 (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.3e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL
Match: A0A1S3C1J8 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.3e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL
Match: A0A6J1CN14 (40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL
Match: A0A6J1G4D5 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111450625 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 2.49e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. NCBI nr
Match: XP_022946610.1 (40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal protein S24-1 [Cucurbita pepo subsp. pepo] >KAG6599291.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030289.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259 bits (661), Expect = 1.02e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 259 bits (661), Expect = 1.02e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. NCBI nr
Match: KAF7833558.1 (40S ribosomal protein S24-1-like [Senna tora])

HSP 1 Score: 259 bits (661), Expect = 1.02e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLAR+YDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. NCBI nr
Match: XP_022937688.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S ribosomal protein S24-1 [Cucurbita maxima] >XP_023536700.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG6586294.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021142.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258 bits (660), Expect = 1.44e-86
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of IVF0003207.2 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 233.8 bits (595), Expect = 8.2e-62
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of IVF0003207.2 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 228.0 bits (580), Expect = 4.5e-60
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of IVF0003207.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	1.2e-60	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	6.4e-59	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	1.9e-39	63.64	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.8e-37	65.15	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	1.8e-37	65.15	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of IVF0003207.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4C1	4.3e-66	100.00	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBS0	4.3e-66	100.00	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3C1J8	4.3e-66	100.00	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1	[more]
A0A6J1CN14	1.2e-65	98.54	40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV...	[more]
A0A6J1G4D5	1.2e-65	98.54	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111450625 PE=3 SV=...	[more]

BLAST of IVF0003207.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455742.1	2.49e-87	100.00	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]
XP_022946610.1	1.02e-86	98.54	40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal p...	[more]
XP_022143165.1	1.02e-86	98.54	40S ribosomal protein S24-1 [Momordica charantia]	[more]
KAF7833558.1	1.02e-86	98.54	40S ribosomal protein S24-1-like [Senna tora]	[more]
XP_022937688.1	1.44e-86	98.54	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S riboso...	[more]

BLAST of IVF0003207.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	8.2e-62	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	4.5e-60	87.12	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 1.9E-59 score: 201.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 26..103 e-value: 6.4E-36 score: 122.2
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.73901
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0003207	IVF0003207	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003207.2-exon	IVF0003207.2-exon-chr05:24443460..24443828	exon
IVF0003207.2-exon	IVF0003207.2-exon-chr05:24443915..24444001	exon
IVF0003207.2-exon	IVF0003207.2-exon-chr05:24444106..24444276	exon
IVF0003207.2-exon	IVF0003207.2-exon-chr05:24444557..24444598	exon
IVF0003207.2-exon	IVF0003207.2-exon-chr05:24444919..24445068	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003207.2-three_prime_utr	IVF0003207.2-three_prime_utr-chr05:24443460..24443786	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003207.2-cds	IVF0003207.2-cds-chr05:24443787..24443828	CDS
IVF0003207.2-cds	IVF0003207.2-cds-chr05:24443915..24444001	CDS
IVF0003207.2-cds	IVF0003207.2-cds-chr05:24444106..24444276	CDS
IVF0003207.2-cds	IVF0003207.2-cds-chr05:24444557..24444598	CDS
IVF0003207.2-cds	IVF0003207.2-cds-chr05:24444919..24444990	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003207.2-five_prime_utr	IVF0003207.2-five_prime_utr-chr05:24444991..24445068	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0003207.2	IVF0003207.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding