IVF0002244.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002244.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 23035792 .. 23036040 (-)
Sequence length	249
RNA-Seq Expression	IVF0002244.1
Synteny	IVF0002244.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGATGCTACCCAAACACGTCAAGAGATTGTTCGACATTTGGAGGCCATCCCTGAGCTCACATGA

mRNA sequence

ATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGATGCTACCCAAACACGTCAAGAGATTGTTCGACATTTGGAGGCCATCCCTGAGCTCACATGA

Coding sequence (CDS)

ATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGATGCTACCCAAACACGTCAAGAGATTGTTCGACATTTGGAGGCCATCCCTGAGCTCACATGA

Protein sequence

MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELT

Homology

[Close]

BLAST of IVF0002244.1 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 239

Query: 61  RQDATQTRQEIVRHLEAIPELT 83
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 240 RQDATQTRQEIVRHLEAIPELT 261

[Close]

BLAST of IVF0002244.1 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 239

Query: 61  RQDATQTRQEIVRHLEAIPELT 83
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 240 RQDATQTRQEIVRHLEAIPELT 261

[Close]

BLAST of IVF0002244.1 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 239

Query: 61  RQDATQTRQEIVRHLEAIPELT 83
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 240 RQDATQTRQEIVRHLEAIPELT 261

[Close]

BLAST of IVF0002244.1 vs. ExPASy TrEMBL
Match: A0A5A7VB43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2465G00010 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
          MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60

Query: 61 RQDATQTRQEIVRHLEAIPELT 83
          RQDATQTRQEIVRHLEAIPELT
Sbjct: 61 RQDATQTRQEIVRHLEAIPELT 82

[Close]

BLAST of IVF0002244.1 vs. ExPASy TrEMBL
Match: A0A5A7U6Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00120 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 239

Query: 61  RQDATQTRQEIVRHLEAIPELT 83
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 240 RQDATQTRQEIVRHLEAIPELT 261

[Close]

BLAST of IVF0002244.1 vs. NCBI nr
Match: KAA0063125.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 4.34e-50
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
          MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60

Query: 61 RQDATQTRQEIVRHLEAIPELT 82
          RQDATQTRQEIVRHLEAIPELT
Sbjct: 61 RQDATQTRQEIVRHLEAIPELT 82

[Close]

BLAST of IVF0002244.1 vs. NCBI nr
Match: KAA0054687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 8.97e-49
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
          MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 8  MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 67

Query: 61 RQDATQTRQEIVRHLEAIPELT 82
          RQDATQTRQEIVR LEAIPELT
Sbjct: 68 RQDATQTRQEIVRQLEAIPELT 89

[Close]

BLAST of IVF0002244.1 vs. NCBI nr
Match: KAA0046928.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 3.98e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 152 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 211

Query: 61  RQDATQTRQEIVRHLEAIPELT 82
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 212 RQDATQTRQEIVRHLEAIPELT 233

[Close]

BLAST of IVF0002244.1 vs. NCBI nr
Match: KAA0048362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 7.56e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 176 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 235

Query: 61  RQDATQTRQEIVRHLEAIPELT 82
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 236 RQDATQTRQEIVRHLEAIPELT 257

[Close]

BLAST of IVF0002244.1 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 8.39e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 60
           MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ
Sbjct: 180 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 239

Query: 61  RQDATQTRQEIVRHLEAIPELT 82
           RQDATQTRQEIVRHLEAIPELT
Sbjct: 240 RQDATQTRQEIVRHLEAIPELT 261

The following BLAST results are available for this feature:

BLAST of IVF0002244.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002244.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UME4	5.6e-37	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	5.6e-37	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	5.6e-37	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VB43	5.6e-37	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6Z3	5.6e-37	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0002244.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063125.1	4.34e-50	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054687.1	8.97e-49	98.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046928.1	3.98e-48	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048362.1	7.56e-48	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035621.1	8.39e-48	100.00	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]

BLAST of IVF0002244.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002244	IVF0002244	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002244.1-exon	IVF0002244.1-exon-chr04:23035792..23036040	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002244.1-cds	IVF0002244.1-cds-chr04:23035792..23036040	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002244.1	IVF0002244.1-protein	polypeptide