IVF0001783.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0001783.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 16205450 .. 16205905 (+)
Sequence length	456
RNA-Seq Expression	IVF0001783.1
Synteny	IVF0001783.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

mRNA sequence

ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

Coding sequence (CDS)

ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

Protein sequence

MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSGLLSRFIMKLQLAKKSFANFVSYPN

Homology

[Close]

BLAST of IVF0001783.1 vs. ExPASy TrEMBL
Match: A0A5D3BZU9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00980 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94  KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237

[Close]

BLAST of IVF0001783.1 vs. ExPASy TrEMBL
Match: A0A5A7U5L6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001280 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85  KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228

[Close]

BLAST of IVF0001783.1 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQTHP AKGLLNKSFSYYD+LAYVF RDR     VETF D+GSNDPS Y+GFQ  D ND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P++Y+Q F+MSQDDVRAS P   S  RT  +GSKQ+R GQ V  +++IH+A+E  NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LR 123
           LR
Sbjct: 206 LR 207

[Close]

BLAST of IVF0001783.1 vs. ExPASy TrEMBL
Match: A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0


Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q  ETF DI SN+ +GY+GF M D ND+
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P +Y+Q   MSQDDVRASRP   S++RT  SGSK+KR  Q    +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRAM 125
           LR +
Sbjct: 189 LRTI 192

[Close]

BLAST of IVF0001783.1 vs. ExPASy TrEMBL
Match: A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 2   QTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIE 61
           Q+HPAAKGLLNKSF YYD+L YVF RDRAT +  +TFAD+GSN+P GY GF M D N+ E
Sbjct: 10  QSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFTKTFADVGSNEPDGYDGFDMADGNE-E 69

Query: 62  IPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQL 121
            P+VY+Q  ++SQDDVRASRP + S  RTE SGSK+KRG Q   +V+ IH  ++  N+QL
Sbjct: 70  FPSVYSQGIDLSQDDVRASRPSRGSEGRTESSGSKRKRGSQREEDVEGIHLEIDQTNEQL 129

Query: 122 R 123
           R
Sbjct: 130 R 129

[Close]

BLAST of IVF0001783.1 vs. NCBI nr
Match: TYK03726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (742), Expect = 2.46e-97
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94  KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 151
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237

[Close]

BLAST of IVF0001783.1 vs. NCBI nr
Match: KAA0051173.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 1.65e-93
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85  KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 151
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228

[Close]

BLAST of IVF0001783.1 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 2.01e-46
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQTHP AKGLLNKSFSYYD+LAYVF RDR     VETF D+GSNDPS Y+GFQ  D ND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P++Y+Q F+MSQDDVRAS P   S  RT  +GSKQ+R GQ V  +++IH+A+E  NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LR 122
           LR
Sbjct: 206 LR 207

[Close]

BLAST of IVF0001783.1 vs. NCBI nr
Match: KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 9.80e-45
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0


Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q  ETF DI SN+ +GY+GF M D ND+
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P +Y+Q   MSQDDVRASRP   S++RT  SGSK+KR  Q    +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRAM 124
           LR +
Sbjct: 189 LRTI 192

[Close]

BLAST of IVF0001783.1 vs. NCBI nr
Match: TYK08743.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 4.26e-40
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           +++HPAA GLLNKSFSYYD+L YVF RDR T Q  ETF D+GSN+P GY  F M D ND 
Sbjct: 230 VRSHPAANGLLNKSFSYYDELTYVFGRDRETGQFAETFVDVGSNEPGGYDRFDMGDGND- 289

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P +Y+QV N+SQDDVRAS+P +AS  RT  SGSK+KRG Q   +V+ IH A++  NDQ
Sbjct: 290 EFPPMYSQVINLSQDDVRASQPSRASEGRTGLSGSKRKRGSQRKVDVEGIHLALDETNDQ 349

Query: 121 LR 122
           LR
Sbjct: 350 LR 350

The following BLAST results are available for this feature:

BLAST of IVF0001783.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001783.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZU9	1.2e-74	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U5L6	1.3e-71	96.53	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DS68	5.1e-36	64.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DXB2	1.6e-34	62.90	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9Q0	1.5e-32	61.16	Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var....	[more]

BLAST of IVF0001783.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03726.1	2.46e-97	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051173.1	1.65e-93	96.53	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067019.1	2.01e-46	64.75	retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p...	[more]
KAA0055946.1	9.80e-45	62.90	retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p...	[more]
TYK08743.1	4.26e-40	61.48	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001783.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0001783	IVF0001783	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0001783.1-exon	IVF0001783.1-exon-chr04:16205450..16205905	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0001783.1-cds	IVF0001783.1-cds-chr04:16205450..16205905	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0001783.1	IVF0001783.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport