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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTACTACTCGATGGAACGACACGGCAAAAGACGACTGGTTACGATGCAGGAGACATGGCGGTCGATGGCGTTTCGTGGTGGCTGTCGAACAGAGACAATCGGTGAGTCAAGCGACGGGAAACGACAGATGGAGGAGAATGACGACGACGACGACGGCTCTTGATTTCTAG mRNA sequence ATGGCTACTACTCGATGGAACGACACGGCAAAAGACGACTGGTTACGATGCAGGAGACATGGCGGTCGATGGCGTTTCGTGGTGGCTGTCGAACAGAGACAATCGGTGAGTCAAGCGACGGGAAACGACAGATGGAGGAGAATGACGACGACGACGACGGCTCTTGATTTCTAG Coding sequence (CDS) ATGGCTACTACTCGATGGAACGACACGGCAAAAGACGACTGGTTACGATGCAGGAGACATGGCGGTCGATGGCGTTTCGTGGTGGCTGTCGAACAGAGACAATCGGTGAGTCAAGCGACGGGAAACGACAGATGGAGGAGAATGACGACGACGACGACGGCTCTTGATTTCTAG Protein sequence MATTRWNDTAKDDWLRCRRHGGRWRFVVAVEQRQSVSQATGNDRWRRMTTTTTALDF
Homology
BLAST of IVF0001615.2 vs. ExPASy TrEMBL
Match: A0A5A7VKU9 (Transformation/transcription domain-associated protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00340 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
Query: 4 TRWNDTAKDDWLRCRRHGGRWRFVVAVEQRQSVSQATGNDRWRRMTTTTTALDF 58
TR +D D+WLR RRH GR F+VA E+R+SVS+ATGN R RR T ALDF
Sbjct: 218 TRQDDMVVDNWLRWRRHDGRRHFMVANERRRSVSRATGNGRQRRTMTPVAALDF 271
BLAST of IVF0001615.2 vs. NCBI nr
Match: KAA0067827.1 (transformation/transcription domain-associated protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 60.8 bits (146), Expect = 4.59e-09 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
Query: 4 TRWNDTAKDDWLRCRRHGGRWRFVVAVEQRQSVSQATGNDRWRRMTTTTTALDF 57
TR +D D+WLR RRH GR F+VA E+R+SVS+ATGN R RR T ALDF
Sbjct: 218 TRQDDMVVDNWLRWRRHDGRRHFMVANERRRSVSRATGNGRQRRTMTPVAALDF 271
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VKU9 | 5.4e-07 | 59.26 | Transformation/transcription domain-associated protein-like OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067827.1 | 4.59e-09 | 59.26 | transformation/transcription domain-associated protein-like [Cucumis melo var. m... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| IVF0001615 | IVF0001615 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0001615.2-exon | IVF0001615.2-exon-chr05:21151046..21151219 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0001615.2-cds | IVF0001615.2-cds-chr05:21151046..21151219 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| IVF0001615.2 | IVF0001615.2-protein | polypeptide |
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