IVF0000674.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0000674.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr01: 15652127 .. 15652672 (-)
Sequence length	546
RNA-Seq Expression	IVF0000674.1
Synteny	IVF0000674.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTGCAAAAGAAGTGTGGGACACGCTACAAAAGAAGTACGATACTGAGGAAGCGAGGTCGAAGAAGTATGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATTTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAGTGAAGGTATGCCACTTGATGATCAATTTCAAGTTGTTGTTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGTACAAAACCAAAGAGTTCTCACTGGAAAGCCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGTGAACGCTATCCCTAGAAAGAAAGCTACTGCAGTTCTGGAACCGGACCTGAAGCCGAAAGGAAACAAGTTGAAATGGGGATCCAACAAACAAAATAACCTACGGTCCATAAGTACAATACAAATTGTTTGTTATAATTGTAATAAACCTAGTCATTTAGCTAGAAATTGTAGAAACAGGAGTCGTCGTACTTCATAG

mRNA sequence

ATGACTACTGCAAAAGAAGTGTGGGACACGCTACAAAAGAAGTACGATACTGAGGAAGCGAGGTCGAAGAAGTATGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATTTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAGTGAAGGTATGCCACTTGATGATCAATTTCAAGTTGTTGTTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGTACAAAACCAAAGAGTTCTCACTGGAAAGCCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGTGAACGCTATCCCTAGAAAGAAAGCTACTGCAGTTCTGGAACCGGACCTGAAGCCGAAAGGAAACAAGTTGAAATGGGGATCCAACAAACAAAATAACCTACGGTCCATAAGTACAATACAAATTGTTTGTTATAATTGTAATAAACCTAGTCATTTAGCTAGAAATTGTAGAAACAGGAGTCGTCGTACTTCATAG

Coding sequence (CDS)

ATGACTACTGCAAAAGAAGTGTGGGACACGCTACAAAAGAAGTACGATACTGAGGAAGCGAGGTCGAAGAAGTATGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATTTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAGTGAAGGTATGCCACTTGATGATCAATTTCAAGTTGTTGTTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGTACAAAACCAAAGAGTTCTCACTGGAAAGCCTAATCACGAGGCTAAGGATAGAGGAGGAAGCAAGGAAGCATGATAAAAAAGAAGAGGTGAACGCTATCCCTAGAAAGAAAGCTACTGCAGTTCTGGAACCGGACCTGAAGCCGAAAGGAAACAAGTTGAAATGGGGATCCAACAAACAAAATAACCTACGGTCCATAAGTACAATACAAATTGTTTGTTATAATTGTAATAAACCTAGTCATTTAGCTAGAAATTGTAGAAACAGGAGTCGTCGTACTTCATAG

Protein sequence

MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGMPLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAIPRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIVCYNCNKPSHLARNCRNRSRRTS

Homology

[Close]

BLAST of IVF0000674.1 vs. ExPASy TrEMBL
Match: A0A5A7VQD4 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00810 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 153/177 (86.44%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWDTLQKKYDTEEAR KKYA+S+YLRYQMTD++FVEAQSHEIQKIAHEIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV VIIDKLP LWKDFKNTLR+KTKEF LESLITRL IEEE RKHDKKEEVNAI
Sbjct: 61  PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIVCYNCNKPSHLARNCRNRS 178
           P+KK T VL+ DLKPKGNK+K GSNKQNN +S ST+QIVCYNCNK  HLARNCRNRS
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRS 177

[Close]

BLAST of IVF0000674.1 vs. ExPASy TrEMBL
Match: A0A5D3CPF2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001350 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.8e-78
Identity = 157/166 (94.58%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSIST--IQIVCYNCN 165
           PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSI+T     VC++ N
Sbjct: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSINTGASLHVCHDLN 166

[Close]

BLAST of IVF0000674.1 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.2e-65
Identity = 132/159 (83.02%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAK+VW+ LQKKYDTEEA SKKYAVSRYLRYQMTDDR VEAQSHEIQKIAHEII+EGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV +IIDKL LLWKDFKNTLR+KTKEFSLE+L TRLRIEEEA+KHDKKEEVNAI
Sbjct: 150 PLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAI 209

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIV 160
           PRKK TAVL+ DLKPKGNK+K G NKQNN +S S   ++
Sbjct: 210 PRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLI 248

[Close]

BLAST of IVF0000674.1 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.2e-65
Identity = 131/159 (82.39%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAK+VW+ LQKKYDTEEA SKKYAVSRYLRYQMTDDR VEAQSHEIQKIAHEII+EGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV +IIDKLPLLWKDFKNTLR+KTKEFSLE+LITRL+IEEEA+K DKK+EVNAI
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKEVNAI 209

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIV 160
           PRKK TAVL+ DLKPKGNK+K G NKQNN +S S   ++
Sbjct: 210 PRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLI 248

[Close]

BLAST of IVF0000674.1 vs. ExPASy TrEMBL
Match: A0A5A7VDM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00440 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.1e-64
Identity = 135/156 (86.54%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWD LQKKYDTE A SKKYAVSRYLRYQMTDD++VEA SHEIQKIAHEIIS+GM
Sbjct: 1   MTTAKEVWDKLQKKYDTEGAGSKKYAVSRYLRYQMTDDKYVEALSHEIQKIAHEIISDGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV VIIDKLPLLWKDFKN LR+KTKEFSLESLI RLRIEEEARKHDKKEEVNAI
Sbjct: 61  PLDDQFQVAVIIDKLPLLWKDFKNILRHKTKEFSLESLIMRLRIEEEARKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTI 157
            RKK TAVL+ DLK KGNK+K  SNKQNNL+S STI
Sbjct: 121 LRKKPTAVLKTDLKSKGNKMKRESNKQNNLQSRSTI 156

[Close]

BLAST of IVF0000674.1 vs. NCBI nr
Match: KAA0049683.1 (uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12189.1 uncharacterized protein E5676_scaffold106G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 299 bits (766), Expect = 1.44e-99
Identity = 157/166 (94.58%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQI--VCYNCN 164
           PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSI+T     VC++ N
Sbjct: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSINTGASLHVCHDLN 166

[Close]

BLAST of IVF0000674.1 vs. NCBI nr
Match: KAA0067915.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 299 bits (765), Expect = 9.76e-99
Identity = 153/177 (86.44%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWDTLQKKYDTEEAR KKYA+S+YLRYQMTD++FVEAQSHEIQKIAHEIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV VIIDKLP LWKDFKNTLR+KTKEF LESLITRL IEEE RKHDKKEEVNAI
Sbjct: 61  PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIVCYNCNKPSHLARNCRNRS 177
           P+KK T VL+ DLKPKGNK+K GSNKQNN +S ST+QIVCYNCNK  HLARNCRNRS
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRS 177

[Close]

BLAST of IVF0000674.1 vs. NCBI nr
Match: KAA0065758.1 (uncharacterized protein E6C27_scaffold37G00490 [Cucumis melo var. makuwa] >TYK13782.1 uncharacterized protein E5676_scaffold488G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (645), Expect = 3.09e-83
Identity = 135/156 (86.54%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWD LQKKYDTE A SKKYAVSRYLRYQMTDD++VEA SHEIQKIAHEIIS+GM
Sbjct: 1   MTTAKEVWDKLQKKYDTEGAGSKKYAVSRYLRYQMTDDKYVEALSHEIQKIAHEIISDGM 60

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV VIIDKLPLLWKDFKN LR+KTKEFSLESLI RLRIEEEARKHDKKEEVNAI
Sbjct: 61  PLDDQFQVAVIIDKLPLLWKDFKNILRHKTKEFSLESLIMRLRIEEEARKHDKKEEVNAI 120

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTI 156
            RKK TAVL+ DLK KGNK+K  SNKQNNL+S STI
Sbjct: 121 LRKKPTAVLKTDLKSKGNKMKRESNKQNNLQSRSTI 156

[Close]

BLAST of IVF0000674.1 vs. NCBI nr
Match: KAA0035842.1 (uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30290.1 uncharacterized protein E5676_scaffold344G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 250 bits (638), Expect = 5.07e-81
Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAKEVWD LQKKYD EE  SKKY VSRYL+YQMTDD+ VEAQSHEIQKIAHEIISEGM
Sbjct: 30  MTTAKEVWDALQKKYDIEEVGSKKYNVSRYLKYQMTDDKSVEAQSHEIQKIAHEIISEGM 89

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQVV IIDKLP LWKDFKNTLR+KTKEFSLESLITRLRIEEE RKHDKKEEVN I
Sbjct: 90  PLDDQFQVV-IIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEVRKHDKKEEVNVI 149

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRS 152
           PRKK++AVL+PDLKPKGNK+K GSNKQNN +S
Sbjct: 150 PRKKSSAVLKPDLKPKGNKMKRGSNKQNNPQS 180

[Close]

BLAST of IVF0000674.1 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (652), Expect = 1.93e-79
Identity = 132/159 (83.02%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60
           MTTAK+VW+ LQKKYDTEEA SKKYAVSRYLRYQMTDDR VEAQSHEIQKIAHEII+EGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAI 120
           PLDDQFQV +IIDKL LLWKDFKNTLR+KTKEFSLE+L TRLRIEEEA+KHDKKEEVNAI
Sbjct: 150 PLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAI 209

Query: 121 PRKKATAVLEPDLKPKGNKLKWGSNKQNNLRSISTIQIV 159
           PRKK TAVL+ DLKPKGNK+K G NKQNN +S S   ++
Sbjct: 210 PRKKFTAVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLI 248

[Close]

BLAST of IVF0000674.1 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 54/174 (31.03%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 4   AKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGMPLD 63
           AKE+WD L+  Y  +E++SK+  V +Y+ ++M ++R +  Q     KIA  I+S GM LD
Sbjct: 283 AKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLD 342

Query: 64  DQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKEEVNAIPRK 123
           + F V  II K P  W+ F   L  + +   +  L+ R++ EEE  ++  K     +  +
Sbjct: 343 EAFHVSTIISKFPPSWRGFCTRL-MEEEYLPVWMLMERVKAEEELLRNGAK----GVTYR 402

Query: 124 KATAVLEPDLKPKGNKLKWGSN----KQNNLRSISTIQIVCYNCNKPSHLARNC 174
            AT   + +  P       GS     K+        + IVC NC +  HLA++C
Sbjct: 403 PATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDERVIIVCDNCGRKGHLAKHC 451

The following BLAST results are available for this feature:

BLAST of IVF0000674.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000674.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQD4	2.9e-78	86.44	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138...	[more]
A0A5D3CPF2	3.8e-78	94.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UA92	6.2e-65	83.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDS3	6.2e-65	82.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDM3	3.1e-64	86.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0000674.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049683.1	1.44e-99	94.58	uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0067915.1	9.76e-99	86.44	putative Polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065758.1	3.09e-83	86.54	uncharacterized protein E6C27_scaffold37G00490 [Cucumis melo var. makuwa] >TYK13...	[more]
KAA0035842.1	5.07e-81	86.84	uncharacterized protein E6C27_scaffold56G00030 [Cucumis melo var. makuwa] >TYK30...	[more]
KAA0050409.1	1.93e-79	83.02	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0000674.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	1.3e-14	31.03	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 159..175 e-value: 1.7E-4 score: 30.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 159..174 e-value: 9.9E-5 score: 22.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 160..175 score: 9.636236
None	No IPR available	GENE3D	4.10.60.10		coord: 154..180 e-value: 6.5E-6 score: 28.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..111 e-value: 1.2E-17 score: 63.9
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 2..146
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..146
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 155..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0000674	IVF0000674	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000674.1-exon	IVF0000674.1-exon-chr01:15652127..15652672	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0000674.1-cds	IVF0000674.1-cds-chr01:15652127..15652672	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0000674.1	IVF0000674.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding