HG10021728.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021728.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosystem I subunit O
Location	Chr05: 15233715 .. 15234230 (+)
Sequence length	351
RNA-Seq Expression	HG10021728.1
Synteny	HG10021728.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCGCCTTCGCTACTTCATCCTCCGTCGTCGGCCTCGGAACCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCGCGTCTCGTCTCCGGTAATCCACTGCTACCTCCAATCAATGCATCTACAACTCTGCTGCTGATATGTTTTTGATTTTGGGCTTTTTTGATATTGTCTTCGCAGGGTTCGTCAGGTCGCCTGTAGCCGCCAGGAATCCGCTTGCCATGGCGCATGCATCCGGCGGTAGGTTCACCTGGTAAGTGATTAGTGATAGTCCGATTTGGAGAATGATTGGTTGTTTGTTGTGATTTTGATTTTGTTTGGGAATGAAGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGGACTGATCGGGTGGATTGCACCGTCGAGCATTCCGGTGATCGATGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGGGCAGAGCTTGCGCATTTTCCTTCTCCACCCGCTCTCACTTCTCAGTTCTGGTAA

mRNA sequence

ATGGCAACCGCCTTCGCTACTTCATCCTCCGTCGTCGGCCTCGGAACCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCGCGTCTCGTCTCCGGGTTCGTCAGGTCGCCTGTAGCCGCCAGGAATCCGCTTGCCATGGCGCATGCATCCGGCGGTAGGTTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGGACTGATCGGGTGGATTGCACCGTCGAGCATTCCGGTGATCGATGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGGGCAGAGCTTGCGCATTTTCCTTCTCCACCCGCTCTCACTTCTCAGTTCTGGTAA

Coding sequence (CDS)

ATGGCAACCGCCTTCGCTACTTCATCCTCCGTCGTCGGCCTCGGAACCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCGCGTCTCGTCTCCGGGTTCGTCAGGTCGCCTGTAGCCGCCAGGAATCCGCTTGCCATGGCGCATGCATCCGGCGGTAGGTTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGGACTGATCGGGTGGATTGCACCGTCGAGCATTCCGGTGATCGATGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGGGCAGAGCTTGCGCATTTTCCTTCTCCACCCGCTCTCACTTCTCAGTTCTGGTAA

Protein sequence

MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW

Homology

[Close]

BLAST of HG10021728.1 vs. NCBI nr
Match: XP_038895620.1 (photosystem I subunit O [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 7.3e-53
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MATAFATSSSVVGLGT+SLSSPSSRSPRLVSGFV+ PV ARNP A+A ASGGRFTCFERD
Sbjct: 1   MATAFATSSSVVGLGTASLSSPSSRSPRLVSGFVKLPVTARNPFAVARASGGRFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFW 116

[Close]

BLAST of HG10021728.1 vs. NCBI nr
Match: XP_022973174.1 (photosystem I subunit O [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51
Identity = 103/116 (88.79%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSRSPRLVSGF++ PV ARNP  +A + GGRFTCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 116

[Close]

BLAST of HG10021728.1 vs. NCBI nr
Match: XP_004139499.1 (photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_022779 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 105/116 (90.52%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++ PVAARNPL++A ASGG+FTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

[Close]

BLAST of HG10021728.1 vs. NCBI nr
Match: XP_022142590.1 (photosystem I subunit O [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFER 60
           MATAFATSS++VGLG +SSLSSPSSRSPRL S FV+SP AARNPL++A ASGGRFTCFER
Sbjct: 1   MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60

Query: 61  DWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           DWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFW 117

[Close]

BLAST of HG10021728.1 vs. NCBI nr
Match: XP_008463649.1 (PREDICTED: photosystem I subunit O [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++SPVAARNPL +  AS GRFTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 115

[Close]

BLAST of HG10021728.1 vs. ExPASy Swiss-Prot
Match: Q949Q5 (Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-39
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MA  FAT S+V+GLG SS+++         S F++  ++A+NPL +A ASGGR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

[Close]

BLAST of HG10021728.1 vs. ExPASy TrEMBL
Match: A0A6J1IDS7 (photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 103/116 (88.79%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSRSPRLVSGF++ PV ARNP  +A + GGRFTCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 116

[Close]

BLAST of HG10021728.1 vs. ExPASy TrEMBL
Match: A0A0A0LT61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.3e-51
Identity = 105/116 (90.52%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++ PVAARNPL++A ASGG+FTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

[Close]

BLAST of HG10021728.1 vs. ExPASy TrEMBL
Match: A0A6J1CLD0 (photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFER 60
           MATAFATSS++VGLG +SSLSSPSSRSPRL S FV+SP AARNPL++A ASGGRFTCFER
Sbjct: 1   MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60

Query: 61  DWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           DWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFW 117

[Close]

BLAST of HG10021728.1 vs. ExPASy TrEMBL
Match: A0A1S3CJR4 (photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.2e-50
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++SPVAARNPL +  AS GRFTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 115

[Close]

BLAST of HG10021728.1 vs. ExPASy TrEMBL
Match: A0A6J1EID2 (photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.0e-49
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSRSPRLVS FV+ PV ARNP  +  + GGR TCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSEFVKPPVVARNPFGVPRSFGGRITCFQRD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGTELAHFPSPPALTSQFW 116

[Close]

BLAST of HG10021728.1 vs. TAIR 10
Match: AT1G08380.1 (photosystem I subunit O )

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-40
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERD 60
           MA  FAT S+V+GLG SS+++         S F++  ++A+NPL +A ASGGR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

The following BLAST results are available for this feature:

BLAST of HG10021728.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895620.1	7.3e-53	93.10	photosystem I subunit O [Benincasa hispida]	[more]
XP_022973174.1	5.2e-51	88.79	photosystem I subunit O [Cucurbita maxima]	[more]
XP_004139499.1	1.5e-50	90.52	photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_0...	[more]
XP_022142590.1	5.8e-50	88.89	photosystem I subunit O [Momordica charantia]	[more]
XP_008463649.1	1.3e-49	89.66	PREDICTED: photosystem I subunit O [Cucumis melo]	[more]

BLAST of HG10021728.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949Q5	4.7e-39	67.24	Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1	[more]

BLAST of HG10021728.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDS7	2.5e-51	88.79	photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1	[more]
A0A0A0LT61	7.3e-51	90.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1	[more]
A0A6J1CLD0	2.8e-50	88.89	photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1	[more]
A0A1S3CJR4	6.2e-50	89.66	photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1	[more]
A0A6J1EID2	9.0e-49	86.21	photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1	[more]

BLAST of HG10021728.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08380.1	3.4e-40	67.24	photosystem I subunit O	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
IPR017498	Photosystem I PsaO	PANTHER	PTHR36311	PHOTOSYSTEM I SUBUNIT O	coord: 6..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021728	HG10021728	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021728.1-cds	HG10021728.1-cds-Chr05:15233715..15233808	CDS
HG10021728.1-cds	HG10021728.1-cds-Chr05:15233898..15233970	CDS
HG10021728.1-cds	HG10021728.1-cds-Chr05:15234047..15234230	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021728.1	HG10021728.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane