HG10021715.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021715.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	nuclear speckle splicing regulatory protein 1-like
Location	Chr05: 14616753 .. 14623446 (+)
Sequence length	798
RNA-Seq Expression	HG10021715.1
Synteny	HG10021715.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGTATGGCCTGCATCTTAGGGTTAAGCCATCACAACAGAAGCAGCCTACAAGACCACCCTTTCATGCTCCTCTTGGATTTCAAGATGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGTGCTTAAGGATGTAAGCTAGCTTGTCTATTACTAATTTTTCCTCTGTGTGTTGGTACCTTTTCCTTTATTAGTGGCTATTTATTGAGCAAAGATATGTCATTAACAAGAATCTCAGGGTTGTATGCTAGACTTATTTTATGTTTCCCCCTTGAAAAATCTAATTAGATCGAGGAGCAACATAAGAAAGCACTAGAGGAGGATCCATCTGTCTTTGACTATGAGGAGTCTATGATGAAATGAAAGAAAAGGCTGTTCAACCTCGAGCATATGATCGTGATGAGCGAAAGGTATGTTCATAATTTGATCCAGAAACTTGCTTGGTGCCTTTATTACTATTTCAGATTTCTTCTCAAGGTATTCTTTTATTTTTTTGAGAGATCTCAAGGTTTTAATTAATCTTTAAAGTTTTATTTTTCTTAAATTTCAATGTAACTTTTTTGGCAGTTGCAACTGTGAACTCTATGATTTTGACCAATGGTCGGGTCTTGATATTATAATTTTTATGGTTGTGTTTGAGATTAGTTGTTAAATGACTCAATAATCAAATACTTGGAAACATGCCTAAAAATAAGAAGAAAATACAACTTGATATTATATTATGCAATTTAGAAGTACTATATTTTTTAGCAGTTCACACCGAGTTGTAGACTTCAGCTTAGACATTGAAACACAATTTTTTTTTCTTGGTAAGAGACAATTTCATTGATGTATGAAATTTACAAAGATGGGCAAAATTGCCCTAGCCATTGGAGTTCCATAAGATTTCTCCAATTGGTCAAAAGAGATGAGAGACTATAAGAATTGTAAAAAGAGGTACATTTGCTCCATGACATAGTAAGGAAGATGATATTCTCAAAAAAAAAGTGTCATATGTGCTCTCTTTGTCAGAGTCGGTTGTTTCTTTCATTCTGTGATTGCCAAAGAAATGCTTTGATAAAATGCATCCACCTTATCTGTTTTCCATCGTAGAAATGGTGGTCAATCATAGTGTATGTGATGAGACTAATAATCTCGTTGGGGAGAGCTGTCACCCATCCAAAGGTAAGGGTAATTTCCTACCAAAATCTGTTGGCATTAGGGCAGTAGATGAAAAGTTGAGATGATATTTCATAATCAGCTTTACAAATTAAACAGCAGGAGAAATAGACATGGATGGGTATTTCCTTTGCAACTTATCACATGTATTTATGGCATTGTGGTTAATTTCCCAGAGAGAATTTGATCTTTCTGGGATAGATGTCACCCCATATTGCCCCATGAAGTGTGTGAGTAGGTTCATCCCTATTAGTCATCAAATCGTGAGAAAGGGATTTTGTAGTGAAGGAGCCGTTTGTGTCTAAATTCCACACTCATTGGTCCTTGCAGTCAGTAAGATGGATCGAATTTGACTTATCCATATGGCTAATCTAGTCCTCAATTTCCTCATCTTTGAAATTTCTCCTATAAATGATGCACCATCCATGCTGAACATCCCAAGAGTTCTGTAAGGATGTGTATATATATTTTTTTTTTGTGCGGCCAAAGCAAAGAGTCTGGGATATTTCTCAAAAAGGATGGAATTCTGGTGCCAACGATCATGCCATACCAATTTTTTGTGTCATCCTATCGTGAATCAGGCTCAGTTGCATCAGTATATTCCTCCATGGCCCTTTAATAGATGAGGAGAAGCTGCTTCTCGGCCAGGATTTTAATGGAGAATCCCCATATTTCAAATCAATAACCAGCTTCCATAATGCACTGTCCTCATGGTAGTATCTCCAAATCCAATTAGCAAGGAGTGCTCTGTTTTTTTTCATGCAAACCTTTGGATGCCAAGGCCCCCACGCAACAATGGTTTGATGACTTTATCCCATCGTACAAGGTGTGTCCCCTTTTGATTAGTGCTACCTTTCCACAGAAAGTTCCTATATAATTTCTCAATGAGAGCAGCAACCTTCGTTGGCATTTTGAAGACAGACATGTAATAAGTGAGGAGATTCAATAGTGTGGCTTGTAATAAGGTTAATCTGCCACCTTTGGAAATGTATGAGTGGTTCCATGAGTGAAGCCTTCTCTCAATCTTCTCCATAATAGGATTCCAGGTATGAGCATGGCCAGCAACCCCTTTTGCATCCATATATGGTGGCCAATGATTCAATCTCTTCTCGTGTAACATTTATGCCCATAATCTCAGATTTATGATGATTAATGTTCAAGCCAGATGCCTTTTCAAAAGATTCCACAAGGCCAAAGAGGTTGGCAATGTTAGTTGGATCCATAGCTGAGTCATTGGCAAAGAGAAGGTGACGAGTCCGAAGATGGCTTTTTTCCAGTCGAAAAGCCTTTTATAGTCCCTTGGTCACTAGCCTCCATCAACGTCCTACTAAGACAATCCATAACAATAACAAAAAGGAAGGGTGAGAGCGAGTCACCTTGTGTGGGGCCCTGAGTGGCATGGATTTTTCTTCTTGGGCGTTAATAATAATGGAGAAATTTGTAGAAGAAATGCAGCCCTGAATCCATTTCCTCCATGTATCACCAAAGCCTTTAGATTTAAGGACTAGATCGAGGAATTCCCAATCAACCTTGTCAAAAGTCTTCTCAATGTCTAGTTTAATCACCACCCCTCTCTATTTCCTTCTATCAAAGTCTTCAATAATTTTGTTGGCAATTAAAGAAGCACAAAATGTCTGTTGGAAAACTAATTAGAACTTTATTTATTGGGAAAATATCAATTTATACCCTTGAACTTTGGGTTTGTATCAATTTAAACCCTAAACTAATAATTGTATCAATTTAAACTTTGAAGTTTCATAAGTGCATCAATTTAAATCCTCCATTATGTTTTATTTGGATAAACATCATATGAGATTTATAATTTTATCAATTAAACCTCTAAACTTACATAAGCGAATCAATTTAGACTTTCAATTTAAATTTATTTGAAATTTGTCCATGCAAATTATAATCGTCCATTTTCCTAAATCGACATTTGAAGAAGTTTGCACAAGTGTAAGAATTGATGCATTCAAATATGATGGGTAAAAGTTTTAATTTAATTCACTTATAACAAGTTAGAAGTTTAATTGAAAAATTAAATATCTCACATGATATTTTTCAAACTCTAAATATGAAGGAGGGTGTAAATTGATACACTTACGAAAGTTTAGGGTTTAAATTGATACAATTATTAATTTGGGGTTTAAATTGATATTCCCCAAGTTTAAGGGTGTGAATTGAAATTTTTCCTAATTTATTTACTATGATGGTGTAATTGAGGCAACAACTTGATTTAAAATAAATAGACATAACAACGTCTTTGAATCCTTCTAGATTTGAACTTGGTCTTATGATTCAACTAGAATTAGGAATTGAAGAAACCAGAAAGCTTCTGCGTAACTTTTATCTCGCTGTATCTAACAAAGGGAAAAAGAAAAACATCATCCTAGAACTTAATGAAACATAATAATGATATCTTGAGGAAACCGAATATGTATAAAATTACAATATCAACCTAATCTAATATTGTGACTCTGGTGAAAACACTTATTGGCTCCTTGCCTTGCTATTGCAGCCAAAGTATATTCAAACTTTGATGGAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGGAAGAAAACTAGCCAAGAAGAGAAGCAAAGAAAATCATCTGTATGCTGGTAAGGACAAATTTGTCACCAGTGCCTACAAAAAGAAACTTGCAGAACAAGCAAAATGGTTGGAGAAGAGAGTCTCCGACAACTTCGGGAGGAGAAAGAGGATGTATGTATACTTTTTTCACATTGTGTCTTTTTCTTTTCATTTTATAATTTTATGAATTCTTATTATTTGTGAAATGCCTTGTATAGTTGATAGAATGAGCCAGTGTAAGTTTTTAATATAAATTATTAGAAGTTTGAGTTCTTTCATACACACACATATGTGTATGTATATATTTTTAGAAACCAACCTTTCACTGAGAAAAATGAAAGGAAGTCCGTTAAAGAACGTGACTTCGAGTTCGAAAAAAAAAAGACCTAAAAAATAATTACAAAAAAATTACGGGACAAAATTTCAAAGAAACATTGAACCTAACAAAGGTCCAAATATCCCATTGGTCTCTCACCACTCTAGACTTTTTATTATTATTTCCCCCCAAAAACTCCAAAAAGCGGACACACTGGCTTGCCACAAAATCTCCCGTTCTAATGAAAAGGCGAATGGAGGAAATTTTTTATAATCTCCCTGAGGTCTCTTTGATAGGTTTGAAATCCTTAGCCCTGCTTGCCCTATCCTTTGGGATGAAGCAAACAATTTCATTTATGGAATTATTAAGGTTACCTATGGCAAGGAATTCTCTAAACACGTGCAAAGATCCTCCTTAATTTCTGCGGCTCCACCCCATGCAAAATCCTCCTTAGTTTCCTCCCAATTATCTTGAAAGAAAGTGATAGAGAAACTATCATGCCCACGGGCTTTGTTTCCACTCAAAAACAACTTTCTCGATTTCATCTATGGTAAAAGGGGAATCCAACTCAGCCTGCTCACCTGGAAAGATGGTGGCTTCAATTAAGGGCCATCCACGAAGGGTTTAGGGTTCAGCTCTGGGGCATGAAAGACTCGAGAAGAAAGATAATATTTTCTTATCCTTTTTTACCAACTCTCCCTATCCTTCTCTAAAGATCCAAGGAAGTTCTTGCTTCTTCTACCATTCACCATTGTTCTATGGAAAAATGCAGAACTACAATCGCTGTCCTTGGGGGGGCCACCTTACTTTCACTTTGTCTCCAACTTATGGTCTCTCTCCTTACCAACTCCACAAACTCCACTTTTAAGAAGAGACGTTCTTCCTTGAGAATCGAATCCAAGCGGCCCTCTTCTTCAAAACCATCGATAACAATAATTTTACTTAACACCTACTTTTTTATCCTTATACCTCCAAAGGTTTCTTTCAAGATTTTAGCATCCGTTAAGAGCCTTCAACTTTTCCATAGACTTTTACCCCTCCCAATTACCAGGAGTCTCCACATTCTACCTTGAGGGGTATGACCCCCAAACGGCCAACCCCCAATTTTGAAAATAAAAAAAGGAGATAAGAGGCCAATGATCTGAAGTAATCCTAGGGCCCAACACTGGTTTCACACTCATGTAGACATCCAGGAGTTCCTTGATTTTTTTAATTATTTGCTAGGTCACACTTTGTTAGATTGAAGACCCTTTCCCTAGGCTACTCCCTTTTATGGGTTTTTTTTTCTTCTTCTTCTTCTTTCTTTTTGGGTTTTCCCTTATAATCTTTCATTTTTGTACGTTCTCTCTCTTTTGTATCTCATCTTGTTCATGGTCTTTGTTTGGTACTGTATGACCCCTATTCTATAGCTGATATGCACTGATTGGGAATAGTACAGCACTTGCATTGCATCCCGGCTGTTCATATCACTGTCACTCAACCATATTTTTTCTTGTATGCCTAAGTAAGCACAATCCAACCAGTTGAACATGTTATTTTACTGGTTTTTTCCCCAATAAGAAAGTAAAACCAGGTTATTTTACTGGTTTTGCAACCATGCTGAACATGTTGATAAATTATTTTATTGCAAGTTTGTGAGGAATAGATGAATTGACTAAATTCCAATAGAAAATGATGTCGTGGACCAGGAAAGGAGGTAAAAAGAGGCCTATAACTATGTTGACTGACATTTCTTTGGGGTTATGCCTCTACCTCTAAACAAACCTTATTTACAGGTTCTCGTGAAATATATATCGATTGAACTATTTTATTTTATTTTATTTATTATTATTATTTGCTTGTGCCTGCTGCTGCTGTGTATGTGTGCAGGGTTGGGAGGGGTCAGAAATTCTCTTATACATTGTTTATTTAACTATGCTGCAATGCATATCTTCATTAGCTTCTTTTTAGTTATCTTTAGAATAGCTTTATCCTTCCATTAATGTGTGTTTTTCATCCATAGCCGATTACCCGATTGTTCTTTTTGTGACTAATAAGAAGAGCGACATTAGTGACTTTTACTTCAACCTTCAAAAGAATATTGCCTACGGTGCTAGAAATGCAATTGAGCCAAGGGAACCTCCAAAGAAGCTTGAATCAGACAGACTGAAGTTCATATATGGGAGAAGCACGAAGACAGTGCTAGTGCTGATATACCTTTAATGACCATCAGTCTTTGAAATACTCCAACTTACCTTCCCAGTCAGCAAAGACAATAGAAGAGCATCCTCATCTTGAACAAGAACACGTTTCAGTTTCAAACAAAATAACACCATCTGATGTACGAGGTACTAGTCCCCCTACGTTACCCGATAAAACTCCACTTGAGGAACAGCCCAAGCATGAGCCAGGTGAACAACCACCAAAGCGTGATCACCATAAAAGAAATGAAGATGCCGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTATGGAATTCTTGTTTAGCTATATTAAACCATGGACTATCATGTGAATGTCATTGTTGTATGGAGGATGATAATTATGTTCTTAATGGTCAAATTAGTCTTTGA

mRNA sequence

ATGAGCAAGTATGGCCTGCATCTTAGGGTTAAGCCATCACAACAGAAGCAGCCTACAAGACCACCCTTTCATGCTCCTCTTGGATTTCAAGATGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGTGCTTAAGGATCCAAAGTATATTCAAACTTTGATGGAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGGAAGAAAACTAGCCAAGAAGAGAAGCAAAGAAAATCATCTGTATGCTGGTAAGGACAAATTTGTCACCAGTGCCTACAAAAAGAAACTTGCAGAACAAGCAAAATGGTTGGAGAAGAGAGTCTCCGACAACTTCGGGAGGAGAAAGAGGATGTTTGAAATCCTTAGCCCTGCTTGCCCTATCCTTTGGGATGAAGCAAACAATTTCATTTATGGAATTATTAAGTCAGCAAAGACAATAGAAGAGCATCCTCATCTTGAACAAGAACACGTTTCAGTTTCAAACAAAATAACACCATCTGATGTACGAGGTACTAGTCCCCCTACGTTACCCGATAAAACTCCACTTGAGGAACAGCCCAAGCATGAGCCAGGTGAACAACCACCAAAGCGTGATCACCATAAAAGAAATGAAGATGCCGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTATGGAATTCTTGTTTAGCTATATTAAACCATGGACTATCATGTGAATGTCATTGTTGTATGGAGGATGATAATTATGTTCTTAATGGTCAAATTAGTCTTTGA

Coding sequence (CDS)

ATGAGCAAGTATGGCCTGCATCTTAGGGTTAAGCCATCACAACAGAAGCAGCCTACAAGACCACCCTTTCATGCTCCTCTTGGATTTCAAGATGATGATGATGATGATGTTGAGAGAGAGATATCCCGCCAAGCTTCCAAGAATAAGGTGCTTAAGGATCCAAAGTATATTCAAACTTTGATGGAAAAGGCACAAGAGAGAGAGAGAGAGCAGGAGATTATATATGGAAGAAAACTAGCCAAGAAGAGAAGCAAAGAAAATCATCTGTATGCTGGTAAGGACAAATTTGTCACCAGTGCCTACAAAAAGAAACTTGCAGAACAAGCAAAATGGTTGGAGAAGAGAGTCTCCGACAACTTCGGGAGGAGAAAGAGGATGTTTGAAATCCTTAGCCCTGCTTGCCCTATCCTTTGGGATGAAGCAAACAATTTCATTTATGGAATTATTAAGTCAGCAAAGACAATAGAAGAGCATCCTCATCTTGAACAAGAACACGTTTCAGTTTCAAACAAAATAACACCATCTGATGTACGAGGTACTAGTCCCCCTACGTTACCCGATAAAACTCCACTTGAGGAACAGCCCAAGCATGAGCCAGGTGAACAACCACCAAAGCGTGATCACCATAAAAGAAATGAAGATGCCGTTGCTGCTGCAAAAGAGCGCTTTTTGGCTCGAAAAAGAGCCAAGGAGGTATGGAATTCTTGTTTAGCTATATTAAACCATGGACTATCATGTGAATGTCATTGTTGTATGGAGGATGATAATTATGTTCTTAATGGTCAAATTAGTCTTTGA

Protein sequence

MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKDPKYIQTLMEKAQEREREQEIIYGRKLAKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWDEANNFIYGIIKSAKTIEEHPHLEQEHVSVSNKITPSDVRGTSPPTLPDKTPLEEQPKHEPGEQPPKRDHHKRNEDAVAAAKERFLARKRAKEVWNSCLAILNHGLSCECHCCMEDDNYVLNGQISL

Homology

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BLAST of HG10021715.1 vs. NCBI nr
Match: XP_038877232.1 (nuclear speckle splicing regulatory protein 1-like [Benincasa hispida] >XP_038877234.1 nuclear speckle splicing regulatory protein 1-like [Benincasa hispida] >XP_038877235.1 nuclear speckle splicing regulatory protein 1-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 1.4e-70
Identity = 175/323 (54.18%), Postives = 188/323 (58.20%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEDQHRK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 61  ALEEDPSVFDYDGVYDQMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      ++
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDITDFYFN 180

Query: 181 EANNFIYGI--------------------------------------------------- 232
              N  YG                                                    
Sbjct: 181 LQKNIAYGARNAIEPREPPNKLLSEKQEKQTEVHISEKHEEGANADTFNDHQSLKYSNLP 240

[Close]

BLAST of HG10021715.1 vs. NCBI nr
Match: XP_004152856.1 (nuclear speckle splicing regulatory protein 1 [Cucumis sativus] >XP_031737086.1 nuclear speckle splicing regulatory protein 1 [Cucumis sativus] >KGN61209.1 hypothetical protein Csa_006568 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 6.7e-70
Identity = 173/323 (53.56%), Postives = 187/323 (57.89%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVT AYKKKLAEQAKW+E+         K      S      + 
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 EANNFIYG--------------------------IIK----------------------- 233
              N  YG                          I++                       
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240

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BLAST of HG10021715.1 vs. NCBI nr
Match: XP_016902161.1 (PREDICTED: nuclear speckle splicing regulatory protein 1-like isoform X2 [Cucumis melo] >XP_016902163.1 PREDICTED: nuclear speckle splicing regulatory protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 4.3e-69
Identity = 169/316 (53.48%), Postives = 186/316 (58.86%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQP RPP  APLGFQDDDDD+VEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      + 
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 EANNFIYGI-------------------------------------------IKSAKTIE 233
              N  YG                                            ++++KTIE
Sbjct: 181 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQLQNSKTIE 240

[Close]

BLAST of HG10021715.1 vs. NCBI nr
Match: XP_008450616.1 (PREDICTED: nuclear speckle splicing regulatory protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 4.3e-69
Identity = 169/316 (53.48%), Postives = 186/316 (58.86%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQP RPP  APLGFQDDDDD+VEREISRQASKNK LKD       
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 132

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      + 
Sbjct: 133 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 192

Query: 181 EANNFIYGI-------------------------------------------IKSAKTIE 233
              N  YG                                            ++++KTIE
Sbjct: 193 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQLQNSKTIE 252

[Close]

BLAST of HG10021715.1 vs. NCBI nr
Match: XP_023520694.1 (nuclear speckle splicing regulatory protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 3.7e-68
Identity = 169/321 (52.65%), Postives = 188/321 (58.57%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KA+EREREQE+IY RKL
Sbjct: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      ++
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180

Query: 181 EANNFIYGI------------------------------------------------IKS 233
              N  YG                                                  +S
Sbjct: 181 LQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESVNADIVNDHQSPKYPSSPSQS 240

[Close]

BLAST of HG10021715.1 vs. ExPASy Swiss-Prot
Match: Q568R1 (Nuclear speckle splicing regulatory protein 1 OS=Danio rerio OX=7955 GN=nsrp1 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-06
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 31  DDDDDDVEREISRQASKNKVL----KDPKYIQTLMEKAQEREREQEIIYGRKLAKKRSKE 90
           D+  DD++++  R  S  K+L    K PKYI  L+   +ER++EQE    RK+ K+R  E
Sbjct: 74  DNVYDDIQKQ--RLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAE 133

Query: 91  NHLYAGKDKFVTSAYKKKLAEQAKWLEK 115
              +A K+ FVTSAY++KL E+ + LE+
Sbjct: 134 GEKFADKEAFVTSAYRQKLKERQEELER 159

[Close]

BLAST of HG10021715.1 vs. ExPASy Swiss-Prot
Match: Q5NCR9 (Nuclear speckle splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Nsrp1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 35  DDVEREISRQASKN--KVL----KDPKYIQTLMEKAQEREREQEIIYGRKLAKKRSKENH 94
           D V  E+ ++  +N  K+L    + PKYI  L++  + R++EQE    +K+ ++R  EN 
Sbjct: 75  DSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENG 134

Query: 95  LYAGKDKFVTSAYKKKLAEQAKWLEK 115
            +  K+ FVTSAYKKKL E+A+  E+
Sbjct: 135 EFDDKEAFVTSAYKKKLEERAEEEER 160

[Close]

BLAST of HG10021715.1 vs. ExPASy Swiss-Prot
Match: Q2KIC0 (Nuclear speckle splicing regulatory protein 1 OS=Bos taurus OX=9913 GN=NSRP1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.7e-04
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 38  EREISRQASKNKVL----KDPKYIQTLMEKAQEREREQEIIYGRKLAKKRSKENHLYAGK 97
           E +  ++ S  K+L    + PKYI  L++  + R++EQE    +K+ ++R  E   +  K
Sbjct: 82  EMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDK 141

Query: 98  DKFVTSAYKKKLAEQAKWLEK 115
           + FVTSAYKKKL E+A+  E+
Sbjct: 142 EAFVTSAYKKKLQERAEEEER 162

[Close]

BLAST of HG10021715.1 vs. ExPASy TrEMBL
Match: A0A0A0LJE9 (DUF2040 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G070270 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.2e-70
Identity = 173/323 (53.56%), Postives = 187/323 (57.89%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKVVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVT AYKKKLAEQAKW+E+         K      S      + 
Sbjct: 121 AKERSKDDHLYAGKDKFVTGAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 EANNFIYG--------------------------IIK----------------------- 233
              N  YG                          I++                       
Sbjct: 181 LQKNVAYGARNAIEPTAPPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHLLQNSNLPS 240

[Close]

BLAST of HG10021715.1 vs. ExPASy TrEMBL
Match: A0A1S4E1R3 (nuclear speckle splicing regulatory protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492150 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.1e-69
Identity = 169/316 (53.48%), Postives = 186/316 (58.86%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQP RPP  APLGFQDDDDD+VEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 61  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      + 
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 180

Query: 181 EANNFIYGI-------------------------------------------IKSAKTIE 233
              N  YG                                            ++++KTIE
Sbjct: 181 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQLQNSKTIE 240

[Close]

BLAST of HG10021715.1 vs. ExPASy TrEMBL
Match: A0A1S3BQM2 (nuclear speckle splicing regulatory protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492150 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.1e-69
Identity = 169/316 (53.48%), Postives = 186/316 (58.86%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQP RPP  APLGFQDDDDD+VEREISRQASKNK LKD       
Sbjct: 13  MSKYGLQLRVKPSQQKQPKRPPLPAPLGFQDDDDDNVEREISRQASKNKALKDIEEQHKK 72

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KAQEREREQEIIY RKL
Sbjct: 73  ALEEDPSVFDYDGVYDEMKEKAVQPRAYDREERKPKYIQNLMKKAQEREREQEIIYERKL 132

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      + 
Sbjct: 133 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKEDVTKKSDMSDFYFS 192

Query: 181 EANNFIYGI-------------------------------------------IKSAKTIE 233
              N  YG                                            ++++KTIE
Sbjct: 193 LQKNVAYGARNAIEPRATPKKLQLEKKEKQTEVHILEKHEESCNGDTFNDHQLQNSKTIE 252

[Close]

BLAST of HG10021715.1 vs. ExPASy TrEMBL
Match: A0A6J1I6R6 (nuclear speckle splicing regulatory protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471664 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.8e-68
Identity = 169/321 (52.65%), Postives = 188/321 (58.57%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KA+EREREQE+IY RKL
Sbjct: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      ++
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180

Query: 181 EANNFIYGI------------------------------------------------IKS 233
              N  YG                                                  +S
Sbjct: 181 LQKNIAYGAGNAVEPREPPQKLQSEKQADVQKMKKHGESANADIVNDHQSPKYPSSPSQS 240

[Close]

BLAST of HG10021715.1 vs. ExPASy TrEMBL
Match: A0A6J1EHK7 (nuclear speckle splicing regulatory protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434242 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.0e-68
Identity = 168/321 (52.34%), Postives = 188/321 (58.57%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------- 60
           MSKYGL LRVKPSQQKQPTRPP  APLGFQDDDDDDVEREISRQASKNK LKD       
Sbjct: 1   MSKYGLQLRVKPSQQKQPTRPPLPAPLGFQDDDDDDVEREISRQASKNKALKDIEEQHKK 60

Query: 61  ----------------------------------PKYIQTLMEKAQEREREQEIIYGRKL 120
                                             PKYIQ LM+KA+EREREQE+IY RKL
Sbjct: 61  ALAEDPSVFDYDGVYDEMKEKAVLPRAYDREERKPKYIQNLMKKAKEREREQEVIYERKL 120

Query: 121 AKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILWD 180
           AK+RSK++HLYAGKDKFVTSAYKKKLAEQAKW+E+         K      S      ++
Sbjct: 121 AKERSKDDHLYAGKDKFVTSAYKKKLAEQAKWMEEERLRQLREEKDDVTKKSDISDFYFN 180

Query: 181 EANNFIYGI------------------------------------------------IKS 233
              N  YG                                                  +S
Sbjct: 181 LQKNIAYGAGNAVEPREPPQKLQSEKQAEVQKLKKHEESANADIVNDHQSPKYPSSPSQS 240

[Close]

BLAST of HG10021715.1 vs. TAIR 10
Match: AT2G27285.1 (Coiled-coil domain-containing protein 55 (DUF2040) )

HSP 1 Score: 111.7 bits (278), Expect = 9.1e-25
Identity = 101/316 (31.96%), Postives = 140/316 (44.30%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQ-PTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLKD------ 60
           M KYGL +R  PSQ+KQ  +RPP      F +++D DVE+EISRQA+K K  K+      
Sbjct: 1   MKKYGLQIRA-PSQKKQSSSRPPLRPASIFDEEEDHDVEKEISRQATKTKAHKEIEEQHK 60

Query: 61  -----------------------------------PKYIQTLMEKAQEREREQEIIYGRK 120
                                              P+YIQ LM++A+ RE+E EI+Y RK
Sbjct: 61  KALEEDPSAFSYDEVYDDMKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERK 120

Query: 121 LAKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPILW 180
           LAK+R K+ HL++ K+KFVT AYK+KL EQ KWL +         +             +
Sbjct: 121 LAKEREKDEHLFSDKEKFVTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKDLSDFYF 180

Query: 181 DEANNFIYGI----IKSAKTIEEHPHLE--------QEHVSVSNKITPSDVRGTSP--PT 231
           +   N  +G      K A+ +EE    E        ++   +  ++T  + +  SP    
Sbjct: 181 NIGKNVAFGAREVEAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEV 240

[Close]

BLAST of HG10021715.1 vs. TAIR 10
Match: AT2G27280.1 (Coiled-coil domain-containing protein 55 (DUF2040) )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 92/287 (32.06%), Postives = 136/287 (47.39%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPF--HAPLGFQDDDDDDVEREISRQASKNKVLK------ 60
           + KYGL +R  PSQ+KQ +  P    A +  +DD+++DVE+EISRQASK K LK      
Sbjct: 142 IKKYGLQIRA-PSQKKQSSSRPLLRTASIFGEDDEENDVEKEISRQASKTKSLKKIEKQH 201

Query: 61  ------DP-----------------------------KYIQTLMEKAQEREREQEIIYGR 120
                 DP                             +YIQ +M++A+ RE+E EI+Y R
Sbjct: 202 KKAIEEDPSAFAYDEVYDDIKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEIVYER 261

Query: 121 KLAKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRKRMFEILSPACPIL 180
           KLAK+R+K+ HLY+ K+KFVT  +K+KL EQ KWLE+         +      +      
Sbjct: 262 KLAKERAKDEHLYSDKEKFVTGPFKRKLEEQKKWLEEERLRELREERDDVTKKNDLSEFY 321

Query: 181 WDEANNFIYGI----------IKSAKTIEEHPHLEQEHVSVSNKITPSDVRGTSPPT--- 231
            +   N  +G           +K  + ++    L +E      K   S  +  SP +   
Sbjct: 322 INIGKNVAFGARDIEAREAGRLKELRKVDRLEELRKEETRKEKK-RKSPEKEVSPDSGDF 381

[Close]

BLAST of HG10021715.1 vs. TAIR 10
Match: AT1G55928.1 (Coiled-coil domain-containing protein 55 (DUF2040) )

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15
Identity = 58/166 (34.94%), Postives = 83/166 (50.00%), Query Frame = 0


Query: 1   MSKYGLHLRVKPSQQKQPTRPPFHAPLGFQDDDDDDVEREISRQASKNKVLK-------- 60
           M+K+GL LR   S++  P      AP+  +D++D+DV++EISRQASK K LK        
Sbjct: 12  MNKFGLQLRKTLSKKVLPI-----APILGEDEEDNDVDKEISRQASKTKSLKKFEEQHKK 71

Query: 61  ----------------------------------DPKYIQTLMEKAQEREREQEIIYGRK 120
                                              P Y Q + EKA  R++E+EI+Y RK
Sbjct: 72  ALEEDPCAFAYDEVYDDTKQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERK 131

Query: 121 LAKKRSKENHLYAGKDKFVTSAYKKKLAEQAKWLEKRVSDNFGRRK 125
           LAK+R+KE HL+  + K VT +YK+KL E+ +WL +      G  K
Sbjct: 132 LAKERAKEQHLFPDQVKVVTGSYKRKLEERDQWLSEERLRELGEEK 172

The following BLAST results are available for this feature:

BLAST of HG10021715.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877232.1	1.4e-70	54.18	nuclear speckle splicing regulatory protein 1-like [Benincasa hispida] >XP_03887...	[more]
XP_004152856.1	6.7e-70	53.56	nuclear speckle splicing regulatory protein 1 [Cucumis sativus] >XP_031737086.1 ...	[more]
XP_016902161.1	4.3e-69	53.48	PREDICTED: nuclear speckle splicing regulatory protein 1-like isoform X2 [Cucumi...	[more]
XP_008450616.1	4.3e-69	53.48	PREDICTED: nuclear speckle splicing regulatory protein 1-like isoform X1 [Cucumi...	[more]
XP_023520694.1	3.7e-68	52.65	nuclear speckle splicing regulatory protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10021715.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q568R1	7.1e-06	40.91	Nuclear speckle splicing regulatory protein 1 OS=Danio rerio OX=7955 GN=nsrp1 PE...	[more]
Q5NCR9	3.0e-04	38.37	Nuclear speckle splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Nsrp1 ...	[more]
Q2KIC0	8.7e-04	37.04	Nuclear speckle splicing regulatory protein 1 OS=Bos taurus OX=9913 GN=NSRP1 PE=...	[more]

BLAST of HG10021715.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJE9	3.2e-70	53.56	DUF2040 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G070270 PE=...	[more]
A0A1S4E1R3	2.1e-69	53.48	nuclear speckle splicing regulatory protein 1-like isoform X2 OS=Cucumis melo OX...	[more]
A0A1S3BQM2	2.1e-69	53.48	nuclear speckle splicing regulatory protein 1-like isoform X1 OS=Cucumis melo OX...	[more]
A0A6J1I6R6	1.8e-68	52.65	nuclear speckle splicing regulatory protein 1-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EHK7	4.0e-68	52.34	nuclear speckle splicing regulatory protein 1-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of HG10021715.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27285.1	9.1e-25	31.96	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT2G27280.1	1.5e-22	32.06	Coiled-coil domain-containing protein 55 (DUF2040)	[more]
AT1G55928.1	1.3e-15	34.94	Coiled-coil domain-containing protein 55 (DUF2040)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018612	Domain of unknown function DUF2040	PFAM	PF09745	DUF2040	coord: 40..115 e-value: 1.4E-20 score: 73.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..182
None	No IPR available	PANTHER	PTHR30060	INNER MEMBRANE PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR30060:SF0	COILED-COIL PROTEIN (DUF2040)-RELATED	coord: 156..231 coord: 53..114
None	No IPR available	PANTHER	PTHR30060:SF0	COILED-COIL PROTEIN (DUF2040)-RELATED	coord: 1..53
None	No IPR available	PANTHER	PTHR30060	INNER MEMBRANE PROTEIN	coord: 156..231
None	No IPR available	PANTHER	PTHR30060	INNER MEMBRANE PROTEIN	coord: 53..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021715	HG10021715	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021715.1-cds	HG10021715.1-cds-Chr05:14616753..14616911	CDS
HG10021715.1-cds	HG10021715.1-cds-Chr05:14620455..14620672	CDS
HG10021715.1-cds	HG10021715.1-cds-Chr05:14621153..14621225	CDS
HG10021715.1-cds	HG10021715.1-cds-Chr05:14623099..14623446	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021715.1	HG10021715.1-protein	polypeptide