HG10021651.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021651.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr05: 13170939 .. 13171801 (+)
Sequence length	291
RNA-Seq Expression	HG10021651.1
Synteny	HG10021651.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTCAGAGTCCAGCGAGTTTATTTTTTCAAATGGGGTGTGATGGGTGTGATTGTTGTGAACCGAATTGCTTTACATTCACAGGTAATACGGCTGCTTGTGCCAATTTAGCAGTCTTCAGCTGTGGACAACAGGTTCATGGTGGAATTGTTCGTAGAGGATTTGACAAGAGTGTAGCATTGATCAATGCACTTCCTGACATGTACGCGAAGTGCATTATTTTGTGATATGTGTTGGGAATGATTAGTCAATTATCGGAATGACTTGTCATAAGATTACATTTTTGTTTTTGACCCCATTGAAAGATTTACAAGTATTTAATTTAGATATGAAAATGTTCTTTATTTAATTTAGATCTGAAACGTTTTCTGTAATTAATTTAAATATAAAAACGTTTTCTTTTGGGTTCTTATAAATAGTTGCTTGAATTTTTCAAGAGGCAGCTCGATTTCAATATTGTCATTCTCTCTATTTTCCATCTCTTTGATGCTATCTGAATAAAGTTTTTATTGATTTCAACTCTTTTCCAACAAGTGCTCGCCAGTCAAGAGTGTTGTGTTAACCTTGGGGAGCAACTGACATAAGATGATTAGTATCAAAGTCATGTTGCAAGTGCTTCCAAGACAGTGGTCATTCTACAATACAACAGTCGATTTGTTTGACACTACTCTGTTTGTACAATATGCCTCAAAGATATTTGGTGTCCTGGACTACCATGATGATTGGCTCTGGAGCACATGGATATGGAAAAGAGGCCATGAGGTTGTTCGATGAAATGGTTCAAAGTGGAATTCAACCTGATCGGATAGTTCATGGCAGTTCTATGCAGCCATGTTGGACTAGTGGAGAAGGGACTTAG

mRNA sequence

ATGAAAGGTAATACGGCTGCTTGTGCCAATTTAGCAGTCTTCAGCTGTGGACAACAGGTTCATGGTGGAATTGTTCGTAGAGGATTTGACAAGAGTGTAGCATTGATCAATGCACTTCCTGACATATATTTGGTGTCCTGGACTACCATGATGATTGGCTCTGGAGCACATGGATATGGAAAAGAGGCCATGAGGTTGTTCGATGAAATGGTTCAAAGTGGAATTCAACCTGATCGGATAGTTCATGGCAGTTCTATGCAGCCATGTTGGACTAGTGGAGAAGGGACTTAG

Coding sequence (CDS)

ATGAAAGGTAATACGGCTGCTTGTGCCAATTTAGCAGTCTTCAGCTGTGGACAACAGGTTCATGGTGGAATTGTTCGTAGAGGATTTGACAAGAGTGTAGCATTGATCAATGCACTTCCTGACATATATTTGGTGTCCTGGACTACCATGATGATTGGCTCTGGAGCACATGGATATGGAAAAGAGGCCATGAGGTTGTTCGATGAAATGGTTCAAAGTGGAATTCAACCTGATCGGATAGTTCATGGCAGTTCTATGCAGCCATGTTGGACTAGTGGAGAAGGGACTTAG

Protein sequence

MKGNTAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIYLVSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSGEGT

Homology

[Close]

BLAST of HG10021651.1 vs. NCBI nr
Match: XP_038879403.1 (putative pentatricopeptide repeat-containing protein At1g56570 isoform X1 [Benincasa hispida] >XP_038879404.1 putative pentatricopeptide repeat-containing protein At1g56570 isoform X1 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVH GIVRRGFDK+VALINAL D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHSGIVRRGFDKNVALINALIDMYAKCGNINDSHKLFCDMPERDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMVQSGIQPDRIV  + +  C  +G
Sbjct: 378 VSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMAVLSGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. NCBI nr
Match: XP_038879405.1 (putative pentatricopeptide repeat-containing protein At1g56570 isoform X2 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVH GIVRRGFDK+VALINAL D+Y                    L
Sbjct: 285 TAACANLAVLSCGQQVHSGIVRRGFDKNVALINALIDMYAKCGNINDSHKLFCDMPERDL 344

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMVQSGIQPDRIV  + +  C  +G
Sbjct: 345 VSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMAVLSGCSHAG 393

[Close]

BLAST of HG10021651.1 vs. NCBI nr
Match: XP_011659402.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus] >XP_031746026.1 putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDK+VALIN+L D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMVQSGIQPDRIV    +  C  +G
Sbjct: 378 VSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. NCBI nr
Match: XP_008450527.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450530.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450531.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >XP_008450532.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo] >KAA0050956.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10303.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-28
Identity = 70/109 (64.22%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDK+VALIN+L D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSINDSHKLFCDMPGRDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG G HGYGKEA++LFDEMVQSGIQPDRIV    +  C  +G
Sbjct: 378 VSWTTMMIGYGTHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLSGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. NCBI nr
Match: XP_022157012.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDKSVALINAL D+Y                    L
Sbjct: 375 TAACANLAVLSCGQQVHGGIVRRGFDKSVALINALIDMYAKCGNVNDSHKLFSDMTQRDL 434

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMV+S I+PDRIV  + +  C  +G
Sbjct: 435 VSWTTMMIGYGAHGYGKEAIKLFDEMVRSRIRPDRIVFMAVLSACSHAG 483

[Close]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 6   AACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY---------------------L 65
           AACAN+A  +CGQQ+HG I RRGF+K+V L NAL D+Y                     L
Sbjct: 321 AACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNL 380

Query: 66  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWT+MMIG G+HGYG EA+ LFD+MV SGI+PDRIV  + +  C  +G
Sbjct: 381 VSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAG 429

[Close]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.5e-14
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------LVS 66
           ACA+L+ F  G+++HG I+R G+     + N+L D+Y                    LVS
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           WT M+ G G HG+GKEA+ LF++M Q+GI+ D I   S +  C  SG
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSG 614

[Close]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot
Match: O23266 (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H13 PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-12
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------LVS 66
           ACANLA    G+QVHG ++  GFD  V + NAL D+Y                    +VS
Sbjct: 247 ACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVS 306

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPC 90
           WT++++G   HG  ++A+ L+D+MV  G++P+ +     +  C
Sbjct: 307 WTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC 349

[Close]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-12
Identity = 37/111 (33.33%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 3   GNTAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY------------------- 62
           G   AC++LA    G   HG  V  G+  + ++ NAL D+Y                   
Sbjct: 414 GVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKR 473

Query: 63  -LVSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
            +VSW TM+ G G HG GKEA+ LF+ M ++G+ PD +   + +  C  SG
Sbjct: 474 DIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524

[Close]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-12
Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIYL--------------------VS 66
           ACA+LA    G+Q+HG ++R GF  ++ + +AL D+Y                     VS
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPC 90
           WT +++G   HG+G EA+ LF+EM + G++P+++   + +  C
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 454

[Close]

BLAST of HG10021651.1 vs. ExPASy TrEMBL
Match: A0A0A0LW37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 71/109 (65.14%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDK+VALIN+L D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMVQSGIQPDRIV    +  C  +G
Sbjct: 378 VSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. ExPASy TrEMBL
Match: A0A1S3BQ30 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103492105 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 70/109 (64.22%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDK+VALIN+L D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSINDSHKLFCDMPGRDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG G HGYGKEA++LFDEMVQSGIQPDRIV    +  C  +G
Sbjct: 378 VSWTTMMIGYGTHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLSGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. ExPASy TrEMBL
Match: A0A5D3CEL5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004550 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 70/109 (64.22%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDK+VALIN+L D+Y                    L
Sbjct: 318 TAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSINDSHKLFCDMPGRDL 377

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG G HGYGKEA++LFDEMVQSGIQPDRIV    +  C  +G
Sbjct: 378 VSWTTMMIGYGTHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLSGCSHAG 426

[Close]

BLAST of HG10021651.1 vs. ExPASy TrEMBL
Match: A0A6J1DTG1 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Momordica charantia OX=3673 GN=LOC111023836 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.5e-28
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV SCGQQVHGGIVRRGFDKSVALINAL D+Y                    L
Sbjct: 375 TAACANLAVLSCGQQVHGGIVRRGFDKSVALINALIDMYAKCGNVNDSHKLFSDMTQRDL 434

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG GAHGYGKEA++LFDEMV+S I+PDRIV  + +  C  +G
Sbjct: 435 VSWTTMMIGYGAHGYGKEAIKLFDEMVRSRIRPDRIVFMAVLSACSHAG 483

[Close]

BLAST of HG10021651.1 vs. ExPASy TrEMBL
Match: A0A6J1JJV4 (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita maxima OX=3661 GN=LOC111486440 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 66/109 (60.55%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 5   TAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------L 64
           TAACANLAV  CGQQVHGGI+RRGFD SVAL+NAL D+Y                    L
Sbjct: 319 TAACANLAVLGCGQQVHGGIIRRGFDNSVALVNALIDMYAKCGNINDSHKLFCDMPQRDL 378

Query: 65  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWTTMMIG G+HGYGKE ++LFDEMV+SGIQPDRIV  + +  C  +G
Sbjct: 379 VSWTTMMIGYGSHGYGKEVIKLFDEMVRSGIQPDRIVFMAVLSACSHAG 427

[Close]

BLAST of HG10021651.1 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 6   AACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY---------------------L 65
           AACAN+A  +CGQQ+HG I RRGF+K+V L NAL D+Y                     L
Sbjct: 321 AACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNL 380

Query: 66  VSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           VSWT+MMIG G+HGYG EA+ LFD+MV SGI+PDRIV  + +  C  +G
Sbjct: 381 VSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAG 429

[Close]

BLAST of HG10021651.1 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 5.3e-15
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------LVS 66
           ACA+L+ F  G+++HG I+R G+     + N+L D+Y                    LVS
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
           WT M+ G G HG+GKEA+ LF++M Q+GI+ D I   S +  C  SG
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSG 614

[Close]

BLAST of HG10021651.1 vs. TAIR 10
Match: AT4G14050.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY--------------------LVS 66
           ACANLA    G+QVHG ++  GFD  V + NAL D+Y                    +VS
Sbjct: 247 ACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVS 306

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPC 90
           WT++++G   HG  ++A+ L+D+MV  G++P+ +     +  C
Sbjct: 307 WTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYAC 349

[Close]

BLAST of HG10021651.1 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-13
Identity = 37/111 (33.33%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 3   GNTAACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIY------------------- 62
           G   AC++LA    G   HG  V  G+  + ++ NAL D+Y                   
Sbjct: 414 GVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKR 473

Query: 63  -LVSWTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPCWTSG 94
            +VSW TM+ G G HG GKEA+ LF+ M ++G+ PD +   + +  C  SG
Sbjct: 474 DIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524

[Close]

BLAST of HG10021651.1 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-13
Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 7   ACANLAVFSCGQQVHGGIVRRGFDKSVALINALPDIYL--------------------VS 66
           ACA+LA    G+Q+HG ++R GF  ++ + +AL D+Y                     VS
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 67  WTTMMIGSGAHGYGKEAMRLFDEMVQSGIQPDRIVHGSSMQPC 90
           WT +++G   HG+G EA+ LF+EM + G++P+++   + +  C
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 454

The following BLAST results are available for this feature:

BLAST of HG10021651.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879403.1	2.3e-28	65.14	putative pentatricopeptide repeat-containing protein At1g56570 isoform X1 [Benin...	[more]
XP_038879405.1	2.3e-28	65.14	putative pentatricopeptide repeat-containing protein At1g56570 isoform X2 [Benin...	[more]
XP_011659402.1	3.0e-28	65.14	putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus]...	[more]
XP_008450527.1	3.9e-28	64.22	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]
XP_022157012.1	1.1e-27	64.22	putative pentatricopeptide repeat-containing protein At1g56570 [Momordica charan...	[more]

BLAST of HG10021651.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FXA9	1.8e-23	51.38	Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th...	[more]
Q9SN39	7.5e-14	38.32	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
O23266	1.8e-12	33.98	Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidop...	[more]
Q9LUS3	9.1e-12	33.33	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]
Q9LW63	9.1e-12	32.04	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]

BLAST of HG10021651.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW37	1.5e-28	65.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1	[more]
A0A1S3BQ30	1.9e-28	64.22	putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo O...	[more]
A0A5D3CEL5	1.9e-28	64.22	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A6J1DTG1	5.5e-28	64.22	putative pentatricopeptide repeat-containing protein At1g56570 OS=Momordica char...	[more]
A0A6J1JJV4	2.7e-27	60.55	putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucurbita maxi...	[more]

BLAST of HG10021651.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56570.1	1.3e-24	51.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18750.1	5.3e-15	38.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G14050.1	1.3e-13	33.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G16610.1	6.5e-13	33.33	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G23330.1	6.5e-13	32.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 45..75 e-value: 1.0E-7 score: 31.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 45..78 e-value: 1.8E-7 score: 28.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 43..77 score: 10.402331
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..95 e-value: 2.8E-9 score: 38.6
None	No IPR available	PANTHER	PTHR47925:SF28	BNAA09G15330D PROTEIN	coord: 5..93
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 5..93
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021651	HG10021651	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021651.1-cds	HG10021651.1-cds-Chr05:13170939..13170945	CDS
HG10021651.1-cds	HG10021651.1-cds-Chr05:13171027..13171144	CDS
HG10021651.1-cds	HG10021651.1-cds-Chr05:13171636..13171801	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021651.1	HG10021651.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding