HG10021071.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021071.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DUF4228 domain-containing protein
Location	Chr05: 5093675 .. 5094031 (+)
Sequence length	357
RNA-Seq Expression	HG10021071.1
Synteny	HG10021071.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACTGTTGCAGAAGCCAATCCTCTACAATGGTCTTCGCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGGAAGCAGCGTCGTGTGCGCCGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGGTTGGTGAACGGTGAAGATGAATTTGAAGTTGAGCATCATCGATCATGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

mRNA sequence

ATGGGCAACTGTTGCAGAAGCCAATCCTCTACAATGGTCTTCGCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGGAAGCAGCGTCGTGTGCGCCGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGGTTGGTGAACGGTGAAGATGAATTTGAAGTTGAGCATCATCGATCATGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

Coding sequence (CDS)

ATGGGCAACTGTTGCAGAAGCCAATCCTCTACAATGGTCTTCGCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGGAAGCAGCGTCGTGTGCGCCGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGGTTGGTGAACGGTGAAGATGAATTTGAAGTTGAGCATCATCGATCATGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

Protein sequence

MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPPQVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPEDY

Homology

[Close]

BLAST of HG10021071.1 vs. NCBI nr
Match: XP_038895954.1 (uncharacterized protein LOC120084128 [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 8.2e-52
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTMVF GDDWGSFSSKHGRGR  GGNATTSGGDPEKYRLLGEKEAASC+ P
Sbjct: 1   MGNCCRSQSSTMVFVGDDWGSFSSKHGRGR--GGNATTSGGDPEKYRLLGEKEAASCSQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLV-NGEDEFEVEHHRSWRPSLQSIPEDY 119
           QVKIKM+KRELE LVKKLEMQG+SLEQVIGR+V NGEDEFEVEHHRSWRPSLQSIPEDY
Sbjct: 61  QVKIKMSKRELEDLVKKLEMQGMSLEQVIGRMVMNGEDEFEVEHHRSWRPSLQSIPEDY 117

[Close]

BLAST of HG10021071.1 vs. NCBI nr
Match: KAA0056859.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLG-EKEAASCAP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKH  GRGCGGNATTSGGDPEK+RLLG +KEAASC+ 
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKH--GRGCGGNATTSGGDPEKHRLLGDQKEAASCSQ 60

Query: 61  PQVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPEDY 119
           P VKIKMTKRELEVLVKKLEMQGL+LEQVIGR++ GE+E+E+EHHRSWRPSLQSIPEDY
Sbjct: 61  PLVKIKMTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

[Close]

BLAST of HG10021071.1 vs. NCBI nr
Match: XP_022933211.1 (uncharacterized protein LOC111440057 [Cucurbita moschata])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTM+FAGDDWGSFSSKHGRGR  GGNA+TS GDPEKYRLLGEK+ +SC  P
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGR--GGNASTSSGDPEKYRLLGEKQTSSCPQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPE 117
           QVKIKMTKRELE LVK LE++GLSLEQVIGR++N EDEF+ EHHRSWRPSLQSIPE
Sbjct: 61  QVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]

BLAST of HG10021071.1 vs. NCBI nr
Match: KAG6584086.1 (hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019687.1 hypothetical protein SDJN02_18650, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTM+FAGDDWGSFSSKHGRGR  GGNA+TS GDPEKYRLLGEK+ +SC  P
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGR--GGNASTSSGDPEKYRLLGEKQTSSCPQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPE 117
           QVKIKMTKRELE LVK LE++GLSLEQVIGR+ N EDEF+ EHHRSWRPSLQSIPE
Sbjct: 61  QVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMTNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]

BLAST of HG10021071.1 vs. NCBI nr
Match: XP_023001321.1 (uncharacterized protein LOC111495485 [Cucurbita maxima])

HSP 1 Score: 194.1 bits (492), Expect = 6.7e-46
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKHGRGR  GGNA+ S GDPEKYRLLGEK+ +SC  P
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGR--GGNASASRGDPEKYRLLGEKQTSSCPQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPE 117
           QVKIKMTKRELE LVK LE++GLSLEQVIGR++N EDEF+ EHHRSWRPSLQSIPE
Sbjct: 61  QVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]

BLAST of HG10021071.1 vs. ExPASy TrEMBL
Match: A0A5A7UTK3 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005800 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLG-EKEAASCAP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKH  GRGCGGNATTSGGDPEK+RLLG +KEAASC+ 
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKH--GRGCGGNATTSGGDPEKHRLLGDQKEAASCSQ 60

Query: 61  PQVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPEDY 119
           P VKIKMTKRELEVLVKKLEMQGL+LEQVIGR++ GE+E+E+EHHRSWRPSLQSIPEDY
Sbjct: 61  PLVKIKMTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

[Close]

BLAST of HG10021071.1 vs. ExPASy TrEMBL
Match: A0A0A0LRL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.3e-50
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKHGRG G   +A TSGGDPEK+RLLGEKEA SC+ P
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPEDY 119
            VKIKMTKRELEVLVKKLEMQGLSLEQVIGR++ GE+EFE+EHHRSWRPSLQSIPEDY
Sbjct: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

[Close]

BLAST of HG10021071.1 vs. ExPASy TrEMBL
Match: A0A6J1EYG4 (uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC111440057 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.5e-47
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTM+FAGDDWGSFSSKHGRGR  GGNA+TS GDPEKYRLLGEK+ +SC  P
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGR--GGNASTSSGDPEKYRLLGEKQTSSCPQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPE 117
           QVKIKMTKRELE LVK LE++GLSLEQVIGR++N EDEF+ EHHRSWRPSLQSIPE
Sbjct: 61  QVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]

BLAST of HG10021071.1 vs. ExPASy TrEMBL
Match: A0A6J1KIA5 (uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGEKEAASCAPP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKHGRGR  GGNA+ S GDPEKYRLLGEK+ +SC  P
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGR--GGNASASRGDPEKYRLLGEKQTSSCPQP 60

Query: 61  QVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPE 117
           QVKIKMTKRELE LVK LE++GLSLEQVIGR++N EDEF+ EHHRSWRPSLQSIPE
Sbjct: 61  QVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]

BLAST of HG10021071.1 vs. ExPASy TrEMBL
Match: A0A1S3BEX3 (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 12  MVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLG-EKEAASCAPPQVKIKMTKRE 71
           MVFAGDDWGSFSSKH  GRGCGGNATTSGGDPEK+RLLG +KEAASC+ P VKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKH--GRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 72  LEVLVKKLEMQGLSLEQVIGRLVNGEDEFEVEHHRSWRPSLQSIPEDY 119
           LEVLVKKLEMQGL+LEQVIGR++ GE+E+E+EHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

[Close]

BLAST of HG10021071.1 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MGNC-CRSQSSTMVFAGDDWGSFSSKHGRGRGCGGNATTSGGDPEKYRLLGE-------K 60
           MGNC C ++ +T  ++GDD GS++ +  R R    +     G+    +LLGE        
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGE----KLLGETSNVTSTS 60

Query: 61  EAASCAPPQVKIKMTKRELEVLVKKLEMQGLSLEQVIGRLV-NGEDEF------EVEHHR 117
            ++S    ++KI++TK+ELE L++ + ++ L+ E+++ +L+  G D+          HH+
Sbjct: 61  SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ 120

The following BLAST results are available for this feature:

BLAST of HG10021071.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895954.1	8.2e-52	91.60	uncharacterized protein LOC120084128 [Benincasa hispida]	[more]
KAA0056859.1	2.6e-50	87.39	DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228...	[more]
XP_022933211.1	1.3e-46	83.62	uncharacterized protein LOC111440057 [Cucurbita moschata]	[more]
KAG6584086.1	1.8e-46	83.62	hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023001321.1	6.7e-46	83.62	uncharacterized protein LOC111495485 [Cucurbita maxima]	[more]

BLAST of HG10021071.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021071.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTK3	1.3e-50	87.39	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LRL1	6.3e-50	86.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1	[more]
A0A6J1EYG4	6.5e-47	83.62	uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC1114400...	[more]
A0A6J1KIA5	3.2e-46	83.62	uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485...	[more]
A0A1S3BEX3	1.5e-43	86.11	uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=...	[more]

BLAST of HG10021071.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.7e-10	32.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45
None	No IPR available	PANTHER	PTHR33647:SF10	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 1..116
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021071	HG10021071	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021071.1-cds	HG10021071.1-cds-Chr05:5093675..5094031	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021071.1	HG10021071.1-protein	polypeptide