HG10020551.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020551.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription factor PRE5-like
Location	Chr05: 517732 .. 518064 (+)
Sequence length	246
RNA-Seq Expression	HG10020551.1
Synteny	HG10020551.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCAAATTAGGCGATGACGAGCTTCAAAATCTCGTCTTCAAATTGCAAACTTTGCTCCCTCACCTCAACCATAAGCCCGACGACTCTGCAGTATATATATACTTAATATGTCGTATATTCTCTTCTTAACTTACCATATAAGCTTTTGAGTTGAATAGTGATTTGACATGTATGTAGGTATCGACAGCAGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGATGGTTAAGAGTCTTCTTCTTACTTAA

mRNA sequence

ATGGCTTCCTCCAAATTAGGCGATGACGAGCTTCAAAATCTCGTCTTCAAATTGCAAACTTTGCTCCCTCACCTCAACCATAAGCCCGACGACTCTGCAGTATCGACAGCAGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGATGGTTAAGAGTCTTCTTCTTACTTAA

Coding sequence (CDS)

ATGGCTTCCTCCAAATTAGGCGATGACGAGCTTCAAAATCTCGTCTTCAAATTGCAAACTTTGCTCCCTCACCTCAACCATAAGCCCGACGACTCTGCAGTATCGACAGCAGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGATGGTTAAGAGTCTTCTTCTTACTTAA

Protein sequence

MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKSLLLT

Homology

[Close]

BLAST of HG10020551.1 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKSLLL 81
          RLWKQLDSMGVDFEMVK LL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of HG10020551.1 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 4.3e-28
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1   MASSKLGDDELQNLVFKLQTLLPHLNHKPD-DSAVSTA--EILKETCDYIKKLQKEVDDL 60
           MASSKL DD+LQNLVFKLQTLLPHLN KPD DSAVS +  +ILKETCDYIKKLQ+EVDDL
Sbjct: 42  MASSKLADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDL 101

Query: 61  SERLWKQLDSMGVDFEMVKSLLL 81
           SERLWKQLDSMGVD EMVK L+L
Sbjct: 102 SERLWKQLDSMGVDLEMVKDLIL 124

[Close]

BLAST of HG10020551.1 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 4.3e-28
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDDEL+NLV KLQTLLP LNHKP +S+ VS  EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKSLL 80
          RLWKQLDSMG+DFEMVK LL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of HG10020551.1 vs. NCBI nr
Match: TYJ98875.1 (transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEM 75
          RLWKQLDSMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of HG10020551.1 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER 60
          MASS L DD+L+NL+ +LQTLLP LNH    S VSTAEILKETCDYIKKLQ+EVDDLSER
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER 60

Query: 61 LWKQLDSMGVDFEMVKSLL 80
          LWKQLDSMGVDFEMVK LL
Sbjct: 61 LWKQLDSMGVDFEMVKHLL 79

[Close]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-11
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +S++ DD++ +LV KL+  LP ++ +     VS +++L+ETC+YI+KL +EVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMGVD---FEMVKSLLL 81
          + LDS+  D     +++SLL+
Sbjct: 72 QLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          SS++ DD++ +LV KLQ L+P L  +  D  VS +++L+ETC+YI+ L +EVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQL---DSMGVDFEMVKSLL 80
          + L   D    +  +++SLL
Sbjct: 74 ELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-10
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +S++ +D++ +L+ KLQ LLP L        VS A +L++TC+YI+ L +EVDDLSERL 
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73

Query: 63 KQL-DSMGVDFEMVKSLL 80
          + L +S      +++SLL
Sbjct: 74 ELLANSDTAQAALIRSLL 91

[Close]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot
Match: A2XD15 (Transcription factor ILI3 OS=Oryza sativa subsp. indica OX=39946 GN=ILI3 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.4e-10
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 5  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---L 64
          ++ D+E+  L+ KLQ LLP  +     S  S +++LKETC YIK L +EVDDLS+R   L
Sbjct: 13 RITDEEINELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSEL 72

Query: 65 WKQLDSMGVDFEMVKSLL 80
             +D+     E+++SLL
Sbjct: 73 MSTMDNNSPQAEIIRSLL 90

[Close]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot
Match: Q10R47 (Transcription factor ILI3 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI3 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.4e-10
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 5  KLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSER---L 64
          ++ D+E+  L+ KLQ LLP  +     S  S +++LKETC YIK L +EVDDLS+R   L
Sbjct: 13 RITDEEINELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSEL 72

Query: 65 WKQLDSMGVDFEMVKSLL 80
             +D+     E+++SLL
Sbjct: 73 MSTMDNNSPQAEIIRSLL 90

[Close]

BLAST of HG10020551.1 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.5e-29
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKSLLL 81
          RLWKQLDSMGVDFEMVK LL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of HG10020551.1 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.5e-29
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKSLLL 81
          RLWKQLDSMGVDFEMVK LL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of HG10020551.1 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDDEL+NLV KLQTLLP LNHKP +S+ VS  EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKSLL 80
          RLWKQLDSMG+DFEMVK LL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of HG10020551.1 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.8e-27
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MASSKLGDDELQNLVFKLQTLLPHLNHKPDDSA-VSTAEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+EL+NLV KL+TLLP LNHKPD+S+  ST EILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEM 75
          RLWKQLDSMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of HG10020551.1 vs. ExPASy TrEMBL
Match: A0A067K4V8 (BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +SK+  +E+ +L+ KLQ LLPH+N +  DS VS ++ILKETC YI KLQ+EVDDLSE+L 
Sbjct: 11 ASKITKNEIIDLILKLQALLPHINQR-QDSRVSASKILKETCSYIGKLQREVDDLSEKLS 70

Query: 63 KQLDSM---GVDFEMVKSLLL 81
          + LDSM    VD E + S+LL
Sbjct: 71 QMLDSMDISNVDVESLISILL 90

[Close]

BLAST of HG10020551.1 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-12
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +S++ DD++ +LV KL+  LP ++ +     VS +++L+ETC+YI+KL +EVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMGVD---FEMVKSLLL 81
          + LDS+  D     +++SLL+
Sbjct: 72 QLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of HG10020551.1 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-12
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          SS++ DD++ +LV KLQ L+P L  +  D  VS +++L+ETC+YI+ L +EVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQL---DSMGVDFEMVKSLL 80
          + L   D    +  +++SLL
Sbjct: 74 ELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of HG10020551.1 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +S++ +D++ +L+ KLQ LLP L        VS A +L++TC+YI+ L +EVDDLSERL 
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73

Query: 63 KQL-DSMGVDFEMVKSLL 80
          + L +S      +++SLL
Sbjct: 74 ELLANSDTAQAALIRSLL 91

[Close]

BLAST of HG10020551.1 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 3  SSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERLW 62
          +S + D+++ +LV +L  LLP L +      VS + +L+ETC YI+ L KEVDDLSERL 
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLS 72

Query: 63 KQLDSM-GVDFEMVKSLLL 81
          + L+S       +++SLL+
Sbjct: 73 QLLESTDSAQAALIRSLLM 91

[Close]

BLAST of HG10020551.1 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 63.5 bits (153), Expect = 8.7e-11
Identity = 27/67 (40.30%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 2  ASSKLGDDELQNLVFKLQTLLPHLNHKPDDSAVSTAEILKETCDYIKKLQKEVDDLSERL 61
          +SS++ DD++ +L+ KL+  +P +      + VS +++L+ETC+YI+ L KE DDLS+RL
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRL 71

Query: 62 WKQLDSM 69
           + L+S+
Sbjct: 72 TQLLESI 78

The following BLAST results are available for this feature:

BLAST of HG10020551.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440200.1	1.1e-28	85.19	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
XP_038895474.1	4.3e-28	84.34	transcription factor PRE5-like [Benincasa hispida]	[more]
XP_011649678.1	4.3e-28	85.00	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
TYJ98875.1	1.8e-26	86.67	transcription factor PRE5-like [Cucumis melo var. makuwa]	[more]
KAG7020038.1	1.2e-25	81.01	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10020551.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	8.5e-11	40.74	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q8GW32	1.1e-10	43.75	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9CA64	3.2e-10	42.31	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
A2XD15	9.4e-10	42.31	Transcription factor ILI3 OS=Oryza sativa subsp. indica OX=39946 GN=ILI3 PE=3 SV...	[more]
Q10R47	9.4e-10	42.31	Transcription factor ILI3 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI3 PE=3 ...	[more]

BLAST of HG10020551.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZP9	5.5e-29	85.19	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	5.5e-29	85.19	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A0A0LQ05	2.1e-28	85.00	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5D3BKI2	8.8e-27	86.67	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A067K4V8	1.2e-12	55.56	BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 S...	[more]

BLAST of HG10020551.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28857.1	6.0e-12	40.74	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	7.9e-12	43.75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	2.3e-11	42.31	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G47710.1	6.7e-11	41.77	BANQUO 3	[more]
AT5G15160.1	8.7e-11	40.30	BANQUO 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..79
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 13..51 e-value: 5.4E-7 score: 29.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..50 score: 9.375124
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 9..68 e-value: 5.0E-9 score: 37.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 10..61
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020551	HG10020551	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020551.1-cds	HG10020551.1-cds-Chr05:517732..517830	CDS
HG10020551.1-cds	HG10020551.1-cds-Chr05:517918..518064	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020551.1	HG10020551.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity