HG10020482.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020482.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L17
Location	Chr04: 32175930 .. 32176430 (-)
Sequence length	501
RNA-Seq Expression	HG10020482.1
Synteny	HG10020482.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTACTTTTCCGTGTACTAACTGTTGTAGAACCTGTGATGCGCTTGTCTATCATGCAGATTTCAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACTACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTTCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA

mRNA sequence

ATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTACTTTTCCGTGTACTAACTGTTGTAGAACCTGTGATGCGCTTGTCTATCATGCAGATTTCAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACTACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTTCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA

Coding sequence (CDS)

ATGGAATTCCTGAGATTCATACAAGTTTCTATAGTTACTTTTCCGTGTACTAACTGTTGTAGAACCTGTGATGCGCTTGTCTATCATGCAGATTTCAACGGCTTTGAACATAACTTTAAAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGAAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACTACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGACGGTTCCTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATAAGAACACTTCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA

Protein sequence

MEFLRFIQVSIVTFPCTNCCRTCDALVYHADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

Homology

[Close]

BLAST of HG10020482.1 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-70
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 31  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR 90
           D+NGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR
Sbjct: 73  DYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR 132

Query: 91  ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT 150
           ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT
Sbjct: 133 ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT 192

Query: 151 LPRRGDNAPMAYIELV 167
           LPRRGDNAPMAYIELV
Sbjct: 193 LPRRGDNAPMAYIELV 208

[Close]

BLAST of HG10020482.1 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           AD+N FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT
Sbjct: 72  ADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 131

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 132 RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 191

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 192 TLPRRGDNAPMAYIELV 208

[Close]

BLAST of HG10020482.1 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 5.1e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           AD+NGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT
Sbjct: 74  ADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 133

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 134 RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 193

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 194 TLPRRGDNAPMAYIELV 210

[Close]

BLAST of HG10020482.1 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-66
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           +DF+ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 
Sbjct: 72  SDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRA 131

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 132 RASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIR 191

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 192 TLPRRGDNAPMAYIELV 208

[Close]

BLAST of HG10020482.1 vs. NCBI nr
Match: XP_010263291.1 (PREDICTED: uncharacterized protein LOC104601596 [Nelumbo nucifera] >DAD46163.1 TPA_asm: hypothetical protein HUJ06_004393 [Nelumbo nucifera])

HSP 1 Score: 261.5 bits (667), Expect = 4.8e-66
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 29  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 88
           H D   FEHNF I+D+GSRFFAMRHGK+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR
Sbjct: 86  HGDSTSFEHNFIIIDNGSRFFAMRHGKKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 145

Query: 89  TRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRII 148
            RASAMRKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG+RNGGYTRII
Sbjct: 146 ARASAMRKYVDKMVTLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGDRNGGYTRII 205

Query: 149 RTLPRRGDNAPMAYIELV 167
           RTLPRRGDNAPMAYIELV
Sbjct: 206 RTLPRRGDNAPMAYIELV 223

[Close]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-65
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 31  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR 90
           D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTR R
Sbjct: 76  DWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRAR 135

Query: 91  ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT 150
           ASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Sbjct: 136 ASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRT 195

Query: 151 LPRRGDNAPMAYIELV 167
           LPRRGDNAPMAYIELV
Sbjct: 196 LPRRGDNAPMAYIELV 211

[Close]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-64
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 31  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR 90
           D   FEH+F ++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHGRIKTT+ R
Sbjct: 70  DSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKAR 129

Query: 91  ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT 150
           A A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIRT
Sbjct: 130 ARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRT 189

Query: 151 LPRRGDNAPMAYIELV 167
           LPRRGDNAPMAYIELV
Sbjct: 190 LPRRGDNAPMAYIELV 205

[Close]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 225.3 bits (573), Expect = 5.0e-58
Identity = 108/126 (85.71%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 41  IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDK 100
           ++D+G RFFAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 101 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 160
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 161 AYIELV 167
           AYIELV
Sbjct: 121 AYIELV 126

[Close]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 51  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 110
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 111 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 167
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.1e-40
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 51  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 110
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 111 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 166
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

[Close]

BLAST of HG10020482.1 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           AD+N FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT
Sbjct: 72  ADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 131

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 132 RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 191

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 192 TLPRRGDNAPMAYIELV 208

[Close]

BLAST of HG10020482.1 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           AD+NGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT
Sbjct: 74  ADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 133

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 134 RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 193

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 194 TLPRRGDNAPMAYIELV 210

[Close]

BLAST of HG10020482.1 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           +DF+ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 
Sbjct: 72  SDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRA 131

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYGERNGGYTRIIR
Sbjct: 132 RASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIR 191

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 192 TLPRRGDNAPMAYIELV 208

[Close]

BLAST of HG10020482.1 vs. ExPASy TrEMBL
Match: A0A1U8AKZ6 (uncharacterized protein LOC104601596 OS=Nelumbo nucifera OX=4432 GN=LOC104601596 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-66
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 29  HADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 88
           H D   FEHNF I+D+GSRFFAMRHGK+VPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR
Sbjct: 86  HGDSTSFEHNFIIIDNGSRFFAMRHGKKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 145

Query: 89  TRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRII 148
            RASAMRKYVDKM+TLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG+RNGGYTRII
Sbjct: 146 ARASAMRKYVDKMVTLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGDRNGGYTRII 205

Query: 149 RTLPRRGDNAPMAYIELV 167
           RTLPRRGDNAPMAYIELV
Sbjct: 206 RTLPRRGDNAPMAYIELV 223

[Close]

BLAST of HG10020482.1 vs. ExPASy TrEMBL
Match: A0A5N6RJK3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016984 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.8e-65
Identity = 124/137 (90.51%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 30  ADFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRT 89
           +++ GFEH+F I+D+G RFFAMRHG+RVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTR 
Sbjct: 79  SEYTGFEHHFTIIDNGCRFFAMRHGRRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRA 138

Query: 90  RASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIR 149
           RASAMRKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEV DRYGERNGGYTRIIR
Sbjct: 139 RASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIR 198

Query: 150 TLPRRGDNAPMAYIELV 167
           TLPRRGDNAPMAYIELV
Sbjct: 199 TLPRRGDNAPMAYIELV 215

[Close]

BLAST of HG10020482.1 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-66
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 31  DFNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTR 90
           D+  FE+ FKIVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQLLKHGRIKTTR R
Sbjct: 76  DWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRAR 135

Query: 91  ASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRT 150
           ASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DRYGERNGGYTRIIRT
Sbjct: 136 ASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRT 195

Query: 151 LPRRGDNAPMAYIELV 167
           LPRRGDNAPMAYIELV
Sbjct: 196 LPRRGDNAPMAYIELV 211

[Close]

BLAST of HG10020482.1 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 59  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 118
           KL RP   R ++LR + +QL+KH RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 119 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 167
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of HG10020482.1 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-23
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 59  KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 118
           KL RP   R ++LR + +QL++H RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 119 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 167
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of HG10020482.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906261.1	7.2e-70	99.26	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_008442307.1	2.3e-68	97.08	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]
XP_004137669.1	5.1e-68	96.35	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_022157331.1	2.8e-66	93.43	50S ribosomal protein L17, chloroplastic [Momordica charantia]	[more]
XP_010263291.1	4.8e-66	92.03	PREDICTED: uncharacterized protein LOC104601596 [Nelumbo nucifera] >DAD46163.1 T...	[more]

BLAST of HG10020482.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	7.2e-65	88.97	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	4.7e-64	86.76	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	5.0e-58	85.71	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	7.3e-41	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	2.1e-40	71.30	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of HG10020482.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B652	1.1e-68	97.08	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A0A0L9N9	2.5e-68	96.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A6J1DXR7	1.4e-66	93.43	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1U8AKZ6	2.3e-66	92.03	uncharacterized protein LOC104601596 OS=Nelumbo nucifera OX=4432 GN=LOC104601596...	[more]
A0A5N6RJK3	9.8e-65	90.51	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016984 PE=3 SV=1	[more]

BLAST of HG10020482.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	5.1e-66	88.97	Ribosomal protein L17 family protein	[more]
AT5G09770.1	3.7e-24	49.07	Ribosomal protein L17 family protein	[more]
AT5G64650.1	1.8e-23	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 41..166 e-value: 9.1E-51 score: 173.1
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 51..166
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 57..166 e-value: 4.1E-43 score: 144.2
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 70..166 e-value: 9.4E-35 score: 119.5
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 28..166
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 55..166 score: 26.132162
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 28..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020482	HG10020482	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020482.1-cds	HG10020482.1-cds-Chr04:32175930..32176430	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020482.1	HG10020482.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome