HG10020320.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020320.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	Chr04: 30865465 .. 30865683 (+)
Sequence length	219
RNA-Seq Expression	HG10020320.1
Synteny	HG10020320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCGGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAGATTGGAACTGATGGGAAGAAGCGGGAGCCACCGAAACATGGATATTTTCAGCCCCCTGATCTTGAAGCTCTGTTTTCTGTTTCTTCCAGAAGGGAAGCCTGTGCTTAA

mRNA sequence

ATGGAAGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCGGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAGATTGGAACTGATGGGAAGAAGCGGGAGCCACCGAAACATGGATATTTTCAGCCCCCTGATCTTGAAGCTCTGTTTTCTGTTTCTTCCAGAAGGGAAGCCTGTGCTTAA

Coding sequence (CDS)

ATGGAAGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGGTGGGAGTGTCGGATTCCGGCGGTGTTCAACTGTCCGCCGCCGCCGAAGAAGAAGATTGGAACTGATGGGAAGAAGCGGGAGCCACCGAAACATGGATATTTTCAGCCCCCTGATCTTGAAGCTCTGTTTTCTGTTTCTTCCAGAAGGGAAGCCTGTGCTTAA

Protein sequence

MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRREACA

Homology

[Close]

BLAST of HG10020320.1 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEA 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKR+PPKHGYFQPPDLEA
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKRDPPKHGYFQPPDLEA 60

Query: 61 LFSVSSRREACA 73
          LFSV  RREACA
Sbjct: 61 LFSVPPRREACA 72

[Close]

BLAST of HG10020320.1 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEA 60
          M++KQG  NYEEECSTPTRWECRIPAVFNCPPPPKKK  T GKKREPPKHGYFQPPDLEA
Sbjct: 1  MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDLEA 60

Query: 61 LFSVSSRREACA 73
          LFS+  RREACA
Sbjct: 61 LFSIPPRREACA 72

[Close]

BLAST of HG10020320.1 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 65/74 (87.84%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP---KKKIGTDGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP   KKK  + GKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVSSRREAC 72
          LEALFSV  RREAC
Sbjct: 61 LEALFSVPPRREAC 74

[Close]

BLAST of HG10020320.1 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 9.1e-30
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP---KKKIGTDGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVSSRREAC 72
          LEALFSV  RREAC
Sbjct: 61 LEALFSVPPRREAC 74

[Close]

BLAST of HG10020320.1 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP---KKKIGTDGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAV NCPPPP   KKK  + GKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVSSRREAC 72
          LEALFSV  RREAC
Sbjct: 61 LEALFSVPPRREAC 74

[Close]

BLAST of HG10020320.1 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-14
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRREA 70
          EE C+TP     RIP    CPPPP+KK+    +KR+PP++GYFQPPDLE LF    RREA
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPPRKKLMV-VRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 71 CA 73
          CA
Sbjct: 72 CA 72

[Close]

BLAST of HG10020320.1 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 9  NYEEECSTPTRWECRIPAVFNCPPPPKKK--IGTDGKKREPPKHGYFQPPDLEALFSVSS 68
          +Y+  C+TPTR +CRIPA   CPPP ++K  +   GKKREPPK GYFQPPDL+  FSV +
Sbjct: 17 DYQMGCTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVA 76

Query: 69 RREA 71
            +A
Sbjct: 77 ASQA 80

[Close]

BLAST of HG10020320.1 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEA 60
           M++KQG  NYEEECSTPTRWECRIPAVFNCPPPPKKK  T GKKREPPKHGYFQPPDLEA
Sbjct: 87  MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDLEA 146

Query: 61  LFSVSSRREACA 73
           LFS+  RREACA
Sbjct: 147 LFSIPPRREACA 158

[Close]

BLAST of HG10020320.1 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP---KKKIGTDGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVSSRREAC 72
          LEALFSV  RREAC
Sbjct: 61 LEALFSVPPRREAC 74

[Close]

BLAST of HG10020320.1 vs. ExPASy TrEMBL
Match: A0A6P5ZVS9 (cyclin-dependent protein kinase inhibitor SMR4-like OS=Durio zibethinus OX=66656 GN=LOC111304331 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPP-KKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRRE 70
          +E  STPTR ECRIP V  CPPPP KKK+ + GKKREPPK+GYFQPPDLE  FS+ + R+
Sbjct: 22 QEGWSTPTRRECRIPVVKECPPPPTKKKLFSFGKKREPPKNGYFQPPDLETFFSMVTTRQ 81

Query: 71 ACA 73
          ACA
Sbjct: 82 ACA 84

[Close]

BLAST of HG10020320.1 vs. ExPASy TrEMBL
Match: A0A067LDV9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02964 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 14 CSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRREACA 73
          C+TP R ECRIP    CPPPPKK+    GKK+EPPK+GYFQPPDLE LF+++SR +ACA
Sbjct: 10 CATPKRRECRIPEPRECPPPPKKRPLRVGKKKEPPKNGYFQPPDLELLFAMNSRNQACA 68

[Close]

BLAST of HG10020320.1 vs. ExPASy TrEMBL
Match: W9RWM9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009438 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 12 EECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRREAC 71
          E+C+TP R ECRIP  F CPPPP+KK    G KR PPK+GYFQPPDL++LF + SRR+AC
Sbjct: 19 EDCTTPKRRECRIPEAFVCPPPPRKK-SVIGAKRPPPKNGYFQPPDLDSLFLMPSRRQAC 78

Query: 72 A 73
          A
Sbjct: 79 A 78

[Close]

BLAST of HG10020320.1 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 5.2e-15
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEALFSVSSRREA 70
          EE C+TP     RIP    CPPPP+KK+    +KR+PP++GYFQPPDLE LF    RREA
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPPRKKLMV-VRKRDPPRNGYFQPPDLETLFYAQPRREA 71

Query: 71 CA 73
          CA
Sbjct: 72 CA 72

[Close]

BLAST of HG10020320.1 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 2   EAKQGPANYEEECS-TPTRWECRIPAVFNCPPPPKKKIGTDGKKREPPKHGYFQPPDLEA 61
           E ++   N EEECS TPT  E +IP +  CPP P+K+      +    +  +  P DLE 
Sbjct: 47  EVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLET 106

Query: 62  LF 63
           +F
Sbjct: 107 VF 108

The following BLAST results are available for this feature:

BLAST of HG10020320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905412.1	1.2e-34	95.83	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_031737830.1	2.4e-30	86.11	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]
XP_023528630.1	4.1e-30	87.84	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
XP_022983341.1	9.1e-30	87.84	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]
KAG6580535.1	3.5e-29	86.49	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]

BLAST of HG10020320.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	7.3e-14	58.06	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	2.1e-13	56.25	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10020320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ2	1.2e-30	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A6J1J1Y0	4.4e-30	87.84	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6P5ZVS9	1.4e-15	68.25	cyclin-dependent protein kinase inhibitor SMR4-like OS=Durio zibethinus OX=66656...	[more]
A0A067LDV9	5.3e-15	66.10	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02964 PE=4 SV=1	[more]
W9RWM9	5.3e-15	65.57	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009438 PE=4 SV=1	[more]

BLAST of HG10020320.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	5.2e-15	58.06	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G40460.1	1.9e-04	37.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..52
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 2..70
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 2..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020320	HG10020320	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020320.1-cds	HG10020320.1-cds-Chr04:30865465..30865683	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020320.1	HG10020320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication