HG10020288.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020288.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 30588512 .. 30588814 (+)
Sequence length	303
RNA-Seq Expression	HG10020288.1
Synteny	HG10020288.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGTCAACAAAAACACATTCGAAATCCCCGAGAGTACCTCGAATTCCACCACAGGCAATTGAAGGACACCTCTCAATCTCAGATTCAAAATTCGGTACAATCCGGAAATCCGCAGATCGTGAGATTCAAAAGAACAGTAAGCAAGGAATGTGCGTGGGGTAAGGGAACAGCAACTAACCCTAGCCAAATCGAAGATACGAAAATTCAGCTCCGGCGAATCGAGATGGCGGAGCACGGCGGAGGAATCGATCAGAGAGAGAGGAAAAAGAGAAAGGAAGTAATGGATTTGAACATTTAA

mRNA sequence

ATGAACAGTCAACAAAAACACATTCGAAATCCCCGAGAGTACCTCGAATTCCACCACAGGCAATTGAAGGACACCTCTCAATCTCAGATTCAAAATTCGGTACAATCCGGAAATCCGCAGATCGTGAGATTCAAAAGAACAGTAAGCAAGGAATGTGCGTGGGGTAAGGGAACAGCAACTAACCCTAGCCAAATCGAAGATACGAAAATTCAGCTCCGGCGAATCGAGATGGCGGAGCACGGCGGAGGAATCGATCAGAGAGAGAGGAAAAAGAGAAAGGAAGTAATGGATTTGAACATTTAA

Coding sequence (CDS)

ATGAACAGTCAACAAAAACACATTCGAAATCCCCGAGAGTACCTCGAATTCCACCACAGGCAATTGAAGGACACCTCTCAATCTCAGATTCAAAATTCGGTACAATCCGGAAATCCGCAGATCGTGAGATTCAAAAGAACAGTAAGCAAGGAATGTGCGTGGGGTAAGGGAACAGCAACTAACCCTAGCCAAATCGAAGATACGAAAATTCAGCTCCGGCGAATCGAGATGGCGGAGCACGGCGGAGGAATCGATCAGAGAGAGAGGAAAAAGAGAAAGGAAGTAATGGATTTGAACATTTAA

Protein sequence

MNSQQKHIRNPREYLEFHHRQLKDTSQSQIQNSVQSGNPQIVRFKRTVSKECAWGKGTATNPSQIEDTKIQLRRIEMAEHGGGIDQRERKKRKEVMDLNI

Homology

The following BLAST results are available for this feature:

BLAST of HG10020288.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020288.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020288.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020288.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020288	HG10020288	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020288.1-cds	HG10020288.1-cds-Chr04:30588512..30588814	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020288.1	HG10020288.1-protein	polypeptide