HG10020278.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020278.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase SGR9, amyloplastic
Location	Chr04: 30499174 .. 30499997 (-)
Sequence length	672
RNA-Seq Expression	HG10020278.1
Synteny	HG10020278.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTGGGTGGTGGCGGTGCAGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAA

mRNA sequence

ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAA

Coding sequence (CDS)

ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAA

Protein sequence

MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRLRLWRWWSFRRWRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD

Homology

[Close]

BLAST of HG10020278.1 vs. NCBI nr
Match: KAA0044054.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa] >TYK25081.1 E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 5.2e-92
Identity = 191/274 (69.71%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 1   MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 61  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK         
Sbjct: 121 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 180

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 181 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 240

[Close]

BLAST of HG10020278.1 vs. NCBI nr
Match: XP_016899723.1 (PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo])

HSP 1 Score: 348.2 bits (892), Expect = 5.2e-92
Identity = 191/274 (69.71%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 11  MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 70

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 71  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 130

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK         
Sbjct: 131 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 190

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 191 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 250

[Close]

BLAST of HG10020278.1 vs. NCBI nr
Match: XP_038905798.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida])

HSP 1 Score: 347.8 bits (891), Expect = 6.8e-92
Identity = 195/274 (71.17%), Postives = 199/274 (72.63%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAALSALSPP LSDLSHSIFSDIH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 11  MAALSALSPPSLSDLSHSIFSDIHLHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 70

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLS LRRLS PFQS SKL P+HPS A ISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 71  RFLLSTLRRLSCPFQSQSKLFPHHPSTATISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 130

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRATLCRIYSDS+LTISG+ATGGGGALIPYIETV RCWKFVGFVGSCGGKA        
Sbjct: 131 KWRATLCRIYSDSLLTISGIATGGGGALIPYIETVVRCWKFVGFVGSCGGKARREVAASP 190

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 191 VAVVELPSVAVGGGGALVECVICKEEMVEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 250

[Close]

BLAST of HG10020278.1 vs. NCBI nr
Match: XP_004137953.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hypothetical protein Csa_002303 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 7.6e-91
Identity = 189/273 (69.23%), Postives = 199/273 (72.89%), Query Frame = 0


Query: 2   AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR 61
           AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR
Sbjct: 12  AALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR 71

Query: 62  LLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK 121
            LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK
Sbjct: 72  FLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK 131

Query: 122 WRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL--- 181
           WRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK          
Sbjct: 132 WRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASPM 191

Query: 182 --------------------------------------RLWRWWSFRRW----------R 224
                                                  L+ W     W          R
Sbjct: 192 AVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCR 251

[Close]

BLAST of HG10020278.1 vs. NCBI nr
Match: XP_022145706.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 9.9e-83
Identity = 175/271 (64.58%), Postives = 191/271 (70.48%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAALSALSP  LSDLSHSIFSDIHH RRRLTFILSSPTLFSLTLRHLNSLSLSHKSLL+A
Sbjct: 40  MAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIA 99

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRL  PFQ P+K LP HPS AAI+P+DLDAAVLLLLLCEVRQHNPAAL TP+ 
Sbjct: 100 RFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQHNPAALETPLP 159

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRA LCRIYSDSIL+ISG+ +GGG  ++PY+ETVARCWKFVGFVGSCGGK         
Sbjct: 160 KWRAALCRIYSDSILSISGIISGGGAVMVPYVETVARCWKFVGFVGSCGGKGKREVAASP 219

Query: 181 ------------------------------------RLWRWWSFRRW----------RFQ 224
                                                L+ W     W          RFQ
Sbjct: 220 VAVVELPSVAAAAAVECVICKEEMGEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQ 279

[Close]

BLAST of HG10020278.1 vs. ExPASy Swiss-Prot
Match: Q8GXF8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.4e-33
Identity = 112/275 (40.73%), Postives = 136/275 (49.45%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL  K+ L+A
Sbjct: 10  MASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPDKTHLIA 69

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAVLLLLLCEVRQHNPAALRTPI 120
             LLS L     P     K   +H S A  +  +DLDA VLLL LCE  Q +P  L    
Sbjct: 70  NHLLSLL----HPLLIHRK---HHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVLEASA 129

Query: 121 TKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS----------- 180
             WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G            
Sbjct: 130 DNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRRRDQKE 189

Query: 181 ----------------------CGGKAGE-------------------------RWRLRL 212
                                     AGE                          W+  L
Sbjct: 190 GYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFHWKCIL 249

[Close]

BLAST of HG10020278.1 vs. ExPASy TrEMBL
Match: A0A5A7TLA8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002040 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.5e-92
Identity = 191/274 (69.71%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 1   MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 61  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK         
Sbjct: 121 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 180

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 181 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 240

[Close]

BLAST of HG10020278.1 vs. ExPASy TrEMBL
Match: A0A1S4DUS9 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103486430 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.5e-92
Identity = 191/274 (69.71%), Postives = 201/274 (73.36%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAAL+ LSPP L+DLSHSIFS++H HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA
Sbjct: 11  MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 70

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT
Sbjct: 71  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 130

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRATLCRIYS+S+LTISG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK         
Sbjct: 131 KWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASP 190

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 191 MAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCC 250

[Close]

BLAST of HG10020278.1 vs. ExPASy TrEMBL
Match: A0A0A0LAQ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.7e-91
Identity = 189/273 (69.23%), Postives = 199/273 (72.89%), Query Frame = 0


Query: 2   AALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR 61
           AAL+ LSPP L+DLSHSIFS+IH HRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR
Sbjct: 12  AALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLAR 71

Query: 62  LLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK 121
            LLSALRRLSRPFQSPSKLLPYHPS AAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK
Sbjct: 72  FLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITK 131

Query: 122 WRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL--- 181
           WRATLC+IYSDS+LT+SG+ATGGGGALIPYI+TV RCWKFVGFVGSCGGK          
Sbjct: 132 WRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASPM 191

Query: 182 --------------------------------------RLWRWWSFRRW----------R 224
                                                  L+ W     W          R
Sbjct: 192 AVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCR 251

[Close]

BLAST of HG10020278.1 vs. ExPASy TrEMBL
Match: A0A6J1CX45 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN=LOC111015097 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.8e-83
Identity = 175/271 (64.58%), Postives = 191/271 (70.48%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAALSALSP  LSDLSHSIFSDIHH RRRLTFILSSPTLFSLTLRHLNSLSLSHKSLL+A
Sbjct: 40  MAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIA 99

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRL  PFQ P+K LP HPS AAI+P+DLDAAVLLLLLCEVRQHNPAAL TP+ 
Sbjct: 100 RFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQHNPAALETPLP 159

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKAGERWRL-- 180
           KWRA LCRIYSDSIL+ISG+ +GGG  ++PY+ETVARCWKFVGFVGSCGGK         
Sbjct: 160 KWRAALCRIYSDSILSISGIISGGGAVMVPYVETVARCWKFVGFVGSCGGKGKREVAASP 219

Query: 181 ------------------------------------RLWRWWSFRRW----------RFQ 224
                                                L+ W     W          RFQ
Sbjct: 220 VAVVELPSVAAAAAVECVICKEEMGEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQ 279

[Close]

BLAST of HG10020278.1 vs. ExPASy TrEMBL
Match: A0A6J1F6V7 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=LOC111442657 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.8e-80
Identity = 176/274 (64.23%), Postives = 191/274 (69.71%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MAALS LS P LSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSLSLSHKSLL+A
Sbjct: 11  MAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKSLLIA 70

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120
           R LLSALRRLSRPFQ+PSK  P+HPS AA++P+DLDAAVLLLLLC+VRQHNPAAL TPIT
Sbjct: 71  RFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPIT 130

Query: 121 KWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGS-CGGKAGERWRL- 180
           +WR+TLCRIYSDS+LTISG+ATGG GA IPYIETVARCWKFVGFV S  GGKA       
Sbjct: 131 QWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAAS 190

Query: 181 ---------------------------------------RLWRWWSFRRW---------- 224
                                                   L+ W     W          
Sbjct: 191 PVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCC 250

[Close]

BLAST of HG10020278.1 vs. TAIR 10
Match: AT5G02750.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-34
Identity = 112/275 (40.73%), Postives = 136/275 (49.45%), Query Frame = 0


Query: 1   MAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60
           MA+LSALSP  L++L+HSI S  HHHRRRL  +LSSPTLFSLTLRHL SLSL  K+ L+A
Sbjct: 10  MASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPDKTHLIA 69

Query: 61  RLLLSALRRLSRPFQSPSKLLPYHPSIA-AISPQDLDAAVLLLLLCEVRQHNPAALRTPI 120
             LLS L     P     K   +H S A  +  +DLDA VLLL LCE  Q +P  L    
Sbjct: 70  NHLLSLL----HPLLIHRK---HHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVLEASA 129

Query: 121 TKWRATLCRIYSDSILT-ISGVATGGGGALIPYIETVARCWKFVGFVGS----------- 180
             WR  L   YS+++L+  SG+ T   G L+PYIET+ RC +FV  +G            
Sbjct: 130 DNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRRRDQKE 189

Query: 181 ----------------------CGGKAGE-------------------------RWRLRL 212
                                     AGE                          W+  L
Sbjct: 190 GYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFHWKCIL 249

The following BLAST results are available for this feature:

BLAST of HG10020278.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044054.1	5.2e-92	69.71	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo var. makuwa] >TYK25...	[more]
XP_016899723.1	5.2e-92	69.71	PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo]	[more]
XP_038905798.1	6.8e-92	71.17	E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida]	[more]
XP_004137953.1	7.6e-91	69.23	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hyp...	[more]
XP_022145706.1	9.9e-83	64.58	E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia]	[more]

BLAST of HG10020278.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXF8	4.4e-33	40.73	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10020278.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLA8	2.5e-92	69.71	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S4DUS9	2.5e-92	69.71	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LAQ3	3.7e-91	69.23	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 P...	[more]
A0A6J1CX45	4.8e-83	64.58	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1F6V7	3.8e-80	64.23	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of HG10020278.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02750.1	3.1e-34	40.73	RING/U-box superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020278	HG10020278	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020278.1-cds	HG10020278.1-cds-Chr04:30499174..30499276	CDS
HG10020278.1-cds	HG10020278.1-cds-Chr04:30499429..30499997	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020278.1	HG10020278.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity