HG10019456.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019456.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription termination factor like
Location	Chr04: 22012451 .. 22012903 (-)
Sequence length	453
RNA-Seq Expression	HG10019456.1
Synteny	HG10019456.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTAGACGGTCAAAGAATCTCCGCCAAGAGCTTTCGCTCTCTATAAAAACACCCTCAAGACCTCCATTTTTGCTATCCAATTTCACTCCCATCTTCTTCTTCCTCCAGCAACTCAAGATTTCACCTCCTCCATCTCAGATTCAGCCTCAATTCTTCATTATGACGCCGATTTTGGAATCCGATGCCGGCGAGATGTTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCCGACCTACCTCCTGGCGGCGAGCTTTCTCCGTCACCGAGAGTTCAAACTCCGTCGTCTGTTCGCCGGAATCGTTCCGATGACGGTGGCAGATTTTAG

mRNA sequence

ATGGCGGCTAGACGGTCAAAGAATCTCCGCCAAGAGCTTTCGCTCTCTATAAAAACACCCTCAAGACCTCCATTTTTGCTATCCAATTTCACTCCCATCTTCTTCTTCCTCCAGCAACTCAAGATTTCACCTCCTCCATCTCAGATTCAGCCTCAATTCTTCATTATGACGCCGATTTTGGAATCCGATGCCGGCGAGATGTTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCCGACCTACCTCCTGGCGGCGAGCTTTCTCCGTCACCGAGAGTTCAAACTCCGTCGTCTGTTCGCCGGAATCGTTCCGATGACGGTGGCAGATTTTAG

Coding sequence (CDS)

ATGGCGGCTAGACGGTCAAAGAATCTCCGCCAAGAGCTTTCGCTCTCTATAAAAACACCCTCAAGACCTCCATTTTTGCTATCCAATTTCACTCCCATCTTCTTCTTCCTCCAGCAACTCAAGATTTCACCTCCTCCATCTCAGATTCAGCCTCAATTCTTCATTATGACGCCGATTTTGGAATCCGATGCCGGCGAGATGTTCGTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTCTATTTGATCCTCTCCAAATCCTCCAATCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTCGCGGCTCTTTCCGACCTACCTCCTGGCGGCGAGCTTTCTCCGTCACCGAGAGTTCAAACTCCGTCGTCTGTTCGCCGGAATCGTTCCGATGACGGTGGCAGATTTTAG

Protein sequence

MAARRSKNLRQELSLSIKTPSRPPFLLSNFTPIFFFLQQLKISPPPSQIQPQFFIMTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF

Homology

[Close]

BLAST of HG10019456.1 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 7.2e-37
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           MTPILESD  EMFVKIAMF FVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF 151
           AALSDLPPGGE+SP+PRVQTPSS RR+ SDDGGRF
Sbjct: 61  AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

[Close]

BLAST of HG10019456.1 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-35
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           MTPI ++DAGEMFV+IAMFVF+Q+LVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1   MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGR 150
           AALSDLPPGGELSPS +V TPSS RR+RSDDGGR
Sbjct: 61  AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of HG10019456.1 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-31
Identity = 80/95 (84.21%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           M  ILE D   +F+KIAMFVFVQVLVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1   MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF 151
           AALSDLPPGGELSPS  V TPSSVRR RSDD GRF
Sbjct: 61  AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 95

[Close]

BLAST of HG10019456.1 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDG 148
           AALSDLPPGGELS       PSSVRR RSDDG
Sbjct: 61  AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of HG10019456.1 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-30
Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           M PILE DAGE FVKIAMF+ VQ+LVY ILS+SS+LFS DQKL+SLSFKPARSVSIRRFL
Sbjct: 1   MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDGGRF 151
           AALSD+P GGELSPS RV+TPS + R  SDDGGRF
Sbjct: 61  AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGRF 95

[Close]

BLAST of HG10019456.1 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDG 148
           AALSDLPPGGELS       PSSVRR RSDDG
Sbjct: 61  AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of HG10019456.1 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 56  MTPILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 115
           MTPI E+DAGEMFV+IAMFVFVQ+LVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 116 AALSDLPPGGELSPSPRVQTPSSVRRNRSDDG 148
           AALSDLPPGGELS       PSSVRR RSDDG
Sbjct: 61  AALSDLPPGGELS-------PSSVRRGRSDDG 85

[Close]

BLAST of HG10019456.1 vs. ExPASy TrEMBL
Match: A0A0A0LD48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706170 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-21
Identity = 73/149 (48.99%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 1   MAARRSKNLRQELSLSIKTPSRPPFLLSNFTPIFFFLQQLKISPPPSQIQPQFFIMTPIL 60
           MAA+  K      S   K PS+PPF +SNFTPIFF  + + +S   S+I       + IL
Sbjct: 1   MAAKTVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLINVS---SRI-----FSSSIL 60

Query: 61  ESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 120
             DA   +                  +  ++  N  K+RSLSFKPARSVSIRRFLAALSD
Sbjct: 61  HYDADFRY-----------------RRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSD 120

Query: 121 LPPGGELSPSPRVQTPSSVRRNRSDDGGR 150
           LPPGGELSPS +V TPSS R +RSDDGGR
Sbjct: 121 LPPGGELSPSTKVSTPSSARLDRSDDGGR 124

[Close]

BLAST of HG10019456.1 vs. ExPASy TrEMBL
Match: B9REM2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 59  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 118
           I+ES  G+M +K+AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3   IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 119 SDLPPGGELSPSPR 133
            DLP  GELSPSP+
Sbjct: 63  QDLPASGELSPSPK 75

[Close]

BLAST of HG10019456.1 vs. ExPASy TrEMBL
Match: A0A6P4BPM5 (uncharacterized protein LOC107434156 OS=Ziziphus jujuba OX=326968 GN=LOC107434156 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.2e-17
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 59  ILESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 118
           +LES   +M +K+ +F  VQ LVYLILSKSS++FS   K RS SFKPARSVS+RRFLAAL
Sbjct: 2   VLESGFSDMLIKVGLFFLVQALVYLILSKSSSIFSKSTK-RSHSFKPARSVSVRRFLAAL 61

Query: 119 SDLPPGGELSPSPRVQTPSSVRRNRS 145
           SD+P GGELSPSP+    S  + N S
Sbjct: 62  SDMPAGGELSPSPKEHLQSPTQENSS 86

[Close]

BLAST of HG10019456.1 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 60  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAAL 119
           ++   G M +K+A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL
Sbjct: 1   MDGGLGTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAAL 60

Query: 120 SDLPPGGELSPSPRVQTPSS 139
            D+P G ++SPS    + SS
Sbjct: 61  QDIPAGDDMSPSSNGSSSSS 80

[Close]

BLAST of HG10019456.1 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 60  LESDAGEMFVKIAMFVFVQVLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAAL 119
           +E     M +K+++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L
Sbjct: 1   MEGSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVL 60

Query: 120 SDLPPGGELSPS 131
            D+P GGE+SPS
Sbjct: 61  QDMPAGGEMSPS 72

The following BLAST results are available for this feature:

BLAST of HG10019456.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905322.1	7.2e-37	90.53	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
XP_011651805.2	1.8e-35	87.23	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
KAG7018107.1	2.0e-31	84.21	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008461750.1	7.7e-31	86.96	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc...	[more]
KAG6606858.1	1.7e-30	78.95	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10019456.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019456.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	3.7e-31	86.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	3.7e-31	86.96	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A0A0LD48	6.0e-21	48.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706170 PE=4 SV=1	[more]
B9REM2	1.1e-17	72.97	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1	[more]
A0A6P4BPM5	5.2e-17	61.63	uncharacterized protein LOC107434156 OS=Ziziphus jujuba OX=326968 GN=LOC10743415...	[more]

BLAST of HG10019456.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31945.1	1.6e-13	51.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G05575.1	4.5e-13	52.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..150
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 61..147
None	No IPR available	PANTHER	PTHR34268:SF8	OS01G0321850 PROTEIN	coord: 61..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019456	HG10019456	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019456.1-cds	HG10019456.1-cds-Chr04:22012451..22012903	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019456.1	HG10019456.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane