HG10019448.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019448.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	myb family transcription factor PHL5-like isoform X1
Location	Chr04: 21955446 .. 21957921 (-)
Sequence length	477
RNA-Seq Expression	HG10019448.1
Synteny	HG10019448.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATTACAATGGGTTTTGTCCACTCTCTTATTTGGATTCCCCATTTCATGATTTCTATGTCTTTGAAGGATATCAAACTTTTCCAGAAACGGAGTCTTCATTTGCATCCTCCAACACTAATGATCATCATCAACATCATCACTTTCATATCTCTTCTTCTTCTGTTCATTCACCAAACCATCAAGAAGCTCAACATCAATCAAGCTGTTGCCAAGAGTTTAATGGTGACTACTGTTCCTGGTCATGTGAGGAGTTGATGCCAAATGATAACAGAAAGGTCAGTCTATAACAGTACTTTGCTTGCTTTTCATTAAAAATAAAAAATAAAATTAAGAATACTCATAAAACTCATCTCTTTTTCCTCAGTTTAAATAGTTTAGGTATTTCTGGTTTTGGTTCAGTTTTGTAAAAATGGGGGGTGGGGGATGAGACAAATAGTACAAAGACAGAAATGTAAATTTTGAAAGTACATGAACCAAATTGAACCAAAAGTAAAAATACTGGGACCAAAGTAGTATTGAAACTTTTTATAGTCCTTGTCGTGCTGTCAAAATTAAGAATCATTTCTAAGACACAAACTAAATAAATTTTGAAAGTACAAGAACTAAATTACACCAAAAGTAAAAATACTGGTTCAAAAGTACAAAGACAGAAATGTAAATTTTGAAAGTACAAAGACCAAATTGAACCGACGCTAAAAGTGTTGCAACTAAAGTAGTATTTAAACCTTTTTTTTTATTTTTGTTCTCGTGCAGTCAAAATCAAAAATCGTTTCTAAGACACGAATTAAATGGACTGAAGAACTTCACCAAAAATTCATCAATTGCGTCGATCAGCTCGGAGGCGCTCAAAGTAAGTAATGTATATCATAAATGATCAGGATATGGCCATCTGAATTAGTAACTCTGTGTTTGTTGCAAAAGTACAGAAGCCACACCAAAGCAACTCTTTCACTTGATGAAAACTAAAGGATTGACTCTCATCCATATAAAAAGTCACTTGCAGGTTTGTTATGCAGAAAAAGCTAACAAAATTTCACTCTCAAATTATGATTCTTTTGATTTAGTTTTTGACCAAATATTTTTCCATTTCAGAAATATCGCATTTCTCAGCAAATTCAAGAATTTTCAGAAGGTGTATGTTCTTATTTTAATCCTAAACTCTATCAAACTAAAAATGTAAGTTTAACCAAAACTCTCAACTAAACCAAATAAATGATGATATGTTTGTGAAGCAGGAAAATCTGAGAGAAAAACTAACAAGAAAGAACTGATACAGGCTAACCAAAACATGTAAGTTTGTGTACTTGGTTGCCATTTACATTAATCGCAACAATAAAATGTTACAAACTTTGATTATATCCAAGCAGGGGGAAGCAGCTGATGGAAGCAGTGAGACAACAACTTGATACTCAGAGTAGTTTGAATGAACAATTGGAGGTCTGATAATCCCATTCCAGAATTTATTAATTTTAATGCGCTTTTTTCCGTTCAACTGTGTTGTTTTCGTTTCAATCTGTATAATCAAATTCTTTAAAAAAGAAAATGGAGGGAGTCTTTTTTCTCTCTTTAAAAGGGTGTTTGGAGCAAGAAGCGTACTTGTGAATCCCACGGAGTTGTGAAGTCTAGAGAGTTATGAACTCTTGAGAACCACATTATAAAGAGTTAATAAAAACATAAAATTGATATTTTTTAATCAGGAGCCCACAAACTCCTTGAACTGAACAAGGAGTGGAGTTTTCCGCAACTCCTTGAGTCGAACACCTCCTAAGTAATTAAGTGAATCAATTTTAACTTGAAAAGTGTGTTAGCCCACAAGTTTAGAATGCTTGTAATTGTCATTTGGGGATTGCAATGTCTTGGTTTGTTAGGGGTTTAGGTTGTGTGAAGAAATGAGTTTTAGAAGCCAAGATTTATGTTTAGCTTATATCTGGTTTATAGGTTTAAAATTCATAAAGAGTTGGTGCATAATTTAAGAGGTAGGGTTCACATGTTAAAGTTTACAAAACTTAGGTTTCATGTTCTTTATATTTAGGAGTGTTCGAGATTGCTTATATGCATCCGGACTATTTAAGTAATCTTACAAGACAATCGTGAGCCTACTATATGTAGTTGTCAAGGAAACTGTTTAGATATTACATCCTACATATATGGCCATTATTGAGAACTAGTTTCACTTGCTAGGTTTTATGTAGAAATTGAAACTAACTAATCCGTGACCTAAATTAATCGAACTCATATGCTAAGTGTATCATTAACACCAAAGACGCTTTTGAAGTTTTAATTTCATCCAATTCGACCTCAAACATTAGTATCTTAGTTTAAGATATACTGCTGTTGATGCTTGCTTTTTGGGTACAGGTTCAGAAGAATTTGATCTCAGACATTGAAGAACAAATGAAGCAACTCAGAGGAGTTTTAGAACTAAGAAGGAAACCCATTGTGTTTAGAAATGATGAAGAGAAAAAATAA

mRNA sequence

ATGAATGATTACAATGGGTTTTGTCCACTCTCTTATTTGGATTCCCCATTTCATGATTTCTATGTCTTTGAAGGATATCAAACTTTTCCAGAAACGGAGTCTTCATTTGCATCCTCCAACACTAATGATCATCATCAACATCATCACTTTCATATCTCTTCTTCTTCTGTTCATTCACCAAACCATCAAGAAGCTCAACATCAATCAAGCTGTTGCCAAGAGTTTAATGGTGACTACTGTTCCTGGTCATGTGAGGAGTTGATGCCAAATGATAACAGAAAGAAATATCGCATTTCTCAGCAAATTCAAGAATTTTCAGAAGGTGTATGTTCTTATTTTAATCCTAAACTCTATCAAACTAAAAATGTTCAGAAGAATTTGATCTCAGACATTGAAGAACAAATGAAGCAACTCAGAGGAGTTTTAGAACTAAGAAGGAAACCCATTGTGTTTAGAAATGATGAAGAGAAAAAATAA

Coding sequence (CDS)

ATGAATGATTACAATGGGTTTTGTCCACTCTCTTATTTGGATTCCCCATTTCATGATTTCTATGTCTTTGAAGGATATCAAACTTTTCCAGAAACGGAGTCTTCATTTGCATCCTCCAACACTAATGATCATCATCAACATCATCACTTTCATATCTCTTCTTCTTCTGTTCATTCACCAAACCATCAAGAAGCTCAACATCAATCAAGCTGTTGCCAAGAGTTTAATGGTGACTACTGTTCCTGGTCATGTGAGGAGTTGATGCCAAATGATAACAGAAAGAAATATCGCATTTCTCAGCAAATTCAAGAATTTTCAGAAGGTGTATGTTCTTATTTTAATCCTAAACTCTATCAAACTAAAAATGTTCAGAAGAATTTGATCTCAGACATTGAAGAACAAATGAAGCAACTCAGAGGAGTTTTAGAACTAAGAAGGAAACCCATTGTGTTTAGAAATGATGAAGAGAAAAAATAA

Protein sequence

MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSPNHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRKKYRISQQIQEFSEGVCSYFNPKLYQTKNVQKNLISDIEEQMKQLRGVLELRRKPIVFRNDEEKK

Homology

[Close]

BLAST of HG10019448.1 vs. NCBI nr
Match: XP_038904770.1 (myb family transcription factor PHL5-like isoform X2 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 119/239 (49.79%), Postives = 123/239 (51.46%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           MND NGF PLSYLDSPFHDFYVFEGYQTFPETESSFASSNTND    HHFHISSSS HS 
Sbjct: 5   MNDNNGFYPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTND----HHFHISSSSFHSL 64

Query: 61  NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRK-------------------------- 120
           N QE QHQSS  QE NGD+CS SCEELM  DN+K                          
Sbjct: 65  NPQEDQHQSSYSQESNGDHCSLSCEELMQCDNKKSKSRIVSKTRIKWSKELHQKFIDCVD 124

Query: 121 --------------------------------KYRISQQIQEFSEGVCSYFNPK------ 155
                                           KYRI Q IQEFS+G       K      
Sbjct: 125 QLGGAQKATPKQLFHLMKTKGLTLIHIKSHLQKYRIFQHIQEFSKGKAERKTNKKELMQS 184

[Close]

BLAST of HG10019448.1 vs. NCBI nr
Match: XP_038904769.1 (myb family transcription factor PHL5-like isoform X1 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 119/240 (49.58%), Postives = 124/240 (51.67%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           MND NGF PLSYLDSPFHDFYVFEGYQTFPETESSFASSNTND    HHFHISSSS HS 
Sbjct: 5   MNDNNGFYPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTND----HHFHISSSSFHSL 64

Query: 61  NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRK-------------------------- 120
           N QE QHQSS  QE NGD+CS SCEELM  DN+K                          
Sbjct: 65  NPQEDQHQSSYSQESNGDHCSLSCEELMQCDNKKSKSRIVSKTRIKWSKELHQKFIDCVD 124

Query: 121 --------------------------------KYRISQQIQEFS---------------- 155
                                           KYRI Q IQEFS                
Sbjct: 125 QLGGAQKATPKQLFHLMKTKGLTLIHIKSHLQKYRIFQHIQEFSKAGKAERKTNKKELMQ 184

[Close]

BLAST of HG10019448.1 vs. NCBI nr
Match: XP_011652834.2 (myb family transcription factor PHL5 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 104/228 (45.61%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           MN+Y  FCPLSYLDSPFHDFYVFEG QTF E ESSFASSNTND  +HHHF I SSS HSP
Sbjct: 44  MNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTND--RHHHFLI-SSSFHSP 103

Query: 61  NHQEAQHQSSCCQEFNGDYCSWSCEELMP-NDNRK------------------------- 120
           N QEAQHQS+C QEF+G+ CSWSCEELMP N N+K                         
Sbjct: 104 NPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSSIVSKTRIKWTEELHQRFTNCV 163

Query: 121 ---------------------------------KYRISQQIQEFSEGVCS---------- 143
                                            KYRISQQIQE S+G             
Sbjct: 164 DQLGGAQKATPKQLFHLMKTKGLTLIHIKSHLQKYRISQQIQELSKGKSERQINKKETMQ 223

[Close]

BLAST of HG10019448.1 vs. NCBI nr
Match: KAE8650941.1 (hypothetical protein Csa_001106 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 104/228 (45.61%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           MN+Y  FCPLSYLDSPFHDFYVFEG QTF E ESSFASSNTND  +HHHF I SSS HSP
Sbjct: 5   MNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTND--RHHHFLI-SSSFHSP 64

Query: 61  NHQEAQHQSSCCQEFNGDYCSWSCEELMP-NDNRK------------------------- 120
           N QEAQHQS+C QEF+G+ CSWSCEELMP N N+K                         
Sbjct: 65  NPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSSIVSKTRIKWTEELHQRFTNCV 124

Query: 121 ---------------------------------KYRISQQIQEFSEGVCS---------- 143
                                            KYRISQQIQE S+G             
Sbjct: 125 DQLGGAQKATPKQLFHLMKTKGLTLIHIKSHLQKYRISQQIQELSKGKSERQINKKETMQ 184

[Close]

BLAST of HG10019448.1 vs. NCBI nr
Match: TYK10646.1 (protein PHR1-LIKE 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 5.6e-32
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
          MN+YN FCPLSYLDSPFHDFYVFEG +TF E +SSFA SN NDH   HHFHISSSS HSP
Sbjct: 5  MNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDH--QHHFHISSSSFHSP 64

Query: 61 NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRK 95
          N Q AQHQSSC QEF+G++CSWSCEEL PN N+K
Sbjct: 65 NPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKK 96

[Close]

BLAST of HG10019448.1 vs. ExPASy TrEMBL
Match: A0A5A7U415 (Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00100 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
          MN+YN FCPLSYLDSPFHDFYVFEG +TF E +SSFA SN NDH   HHFHISSSS HSP
Sbjct: 5  MNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDH--QHHFHISSSSFHSP 64

Query: 61 NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRK 95
          N Q AQHQSSC QEF+G++CSWSCEEL PN N+K
Sbjct: 65 NPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKK 96

[Close]

BLAST of HG10019448.1 vs. ExPASy TrEMBL
Match: A0A5D3CJQ9 (Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00080 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
          MN+YN FCPLSYLDSPFHDFYVFEG +TF E +SSFA SN NDH   HHFHISSSS HSP
Sbjct: 5  MNEYNEFCPLSYLDSPFHDFYVFEGCRTFSEVDSSFAPSNINDH--QHHFHISSSSFHSP 64

Query: 61 NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRK 95
          N Q AQHQSSC QEF+G++CSWSCEEL PN N+K
Sbjct: 65 NPQAAQHQSSCSQEFDGEHCSWSCEELRPNHNKK 96

[Close]

BLAST of HG10019448.1 vs. ExPASy TrEMBL
Match: A0A0A0LEY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G702590 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           MN+Y  FCPLSYLDSPFHDFYVFEG QTF E ESSFASSNTND  +HHHF I SSS HSP
Sbjct: 5   MNEYKEFCPLSYLDSPFHDFYVFEGCQTFSEVESSFASSNTND--RHHHFLI-SSSFHSP 64

Query: 61  NHQEAQHQSSCCQEFNGDYCSWSCEELMPNDNRKKYRIS 100
           N QEAQHQS+C QEF+G+ CSWSCEELMP +  KK + S
Sbjct: 65  NPQEAQHQSNCSQEFDGENCSWSCEELMPINRNKKLKSS 100

[Close]

BLAST of HG10019448.1 vs. ExPASy TrEMBL
Match: A0A6J1F3G0 (myb family transcription factor PHL5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441832 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 103/243 (42.39%), Postives = 116/243 (47.74%), Query Frame = 0


Query: 1   MNDYNGFCPLSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSP 60
           M+D NG C LSYL SP  DFYVFEG +TF E ESSF SSNT D   H HF  SS +  S 
Sbjct: 7   MSDCNGLCQLSYLGSPLLDFYVFEGCETFSEAESSFVSSNTEDDQPHLHF--SSFAFDSS 66

Query: 61  NHQ-EAQHQSSCCQEFNGDYCSWSCEELMPNDNRK------------------------- 120
            HQ EAQ QSSCC EF+GD CSWS EELM N+N+K                         
Sbjct: 67  KHQGEAQEQSSCCHEFSGD-CSWSWEELMGNENKKSKSRIGSKKRIKWTEELHQKFMNCV 126

Query: 121 ---------------------------------KYRISQQIQEFSEGVCSYFNPK----- 159
                                            KYRISQ I++FS+G       K     
Sbjct: 127 DQLGGTQKATPKQLLHLMKTEGLTLIHIKSHLQKYRISQHIRDFSKGKSERKPDKELMLA 186

[Close]

BLAST of HG10019448.1 vs. ExPASy TrEMBL
Match: A0A6J1J569 (myb family transcription factor PHL5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481412 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-24
Identity = 96/234 (41.03%), Postives = 107/234 (45.73%), Query Frame = 0


Query: 10  LSYLDSPFHDFYVFEGYQTFPETESSFASSNTNDHHQHHHFHISSSSVHSPNHQ-EAQHQ 69
           LSYL SP  DFYVFEG +TF E ESSF SSNT D    HH   SS +  S  HQ EAQ Q
Sbjct: 20  LSYLGSPLLDFYVFEGCETFSEAESSFVSSNTED--DQHHLPFSSFTFDSSKHQGEAQEQ 79

Query: 70  SSCCQEFNGDYCSWSCEELMPNDNRK---------------------------------- 129
           SSCCQE NGD CSWS EELM N+N+K                                  
Sbjct: 80  SSCCQELNGD-CSWSWEELMGNENKKSKSRIGWKKRIKWTEELHQKFMNCVDQLGGTQKA 139

Query: 130 ------------------------KYRISQQIQEFSEGVCSYFNPK-------------- 159
                                   K RISQ I++FS+G       K              
Sbjct: 140 TPKQLLHLMKTEGLTLIHIKSHLQKCRISQHIRDFSKGKPERKTDKELMLANQNRGKQLV 199

The following BLAST results are available for this feature:

BLAST of HG10019448.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904770.1	1.5e-40	49.79	myb family transcription factor PHL5-like isoform X2 [Benincasa hispida]	[more]
XP_038904769.1	1.6e-39	49.58	myb family transcription factor PHL5-like isoform X1 [Benincasa hispida]	[more]
XP_011652834.2	2.5e-32	45.61	myb family transcription factor PHL5 [Cucumis sativus]	[more]
KAE8650941.1	2.5e-32	45.61	hypothetical protein Csa_001106 [Cucumis sativus]	[more]
TYK10646.1	5.6e-32	76.60	protein PHR1-LIKE 1-like [Cucumis melo var. makuwa]	[more]

BLAST of HG10019448.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019448.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U415	2.7e-32	76.60	Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CJQ9	2.7e-32	76.60	Protein PHR1-LIKE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LEY1	1.1e-30	74.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G702590 PE=4 SV=1	[more]
A0A6J1F3G0	4.8e-29	42.39	myb family transcription factor PHL5-like isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1J569	4.7e-24	41.03	myb family transcription factor PHL5-like isoform X2 OS=Cucurbita maxima OX=3661...	[more]

BLAST of HG10019448.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019448	HG10019448	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019448.1-cds	HG10019448.1-cds-Chr04:21955446..21955556	CDS
HG10019448.1-cds	HG10019448.1-cds-Chr04:21956739..21956822	CDS
HG10019448.1-cds	HG10019448.1-cds-Chr04:21957640..21957921	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019448.1	HG10019448.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity