HG10019269.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019269.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like
Location	Chr04: 19559504 .. 19565607 (+)
Sequence length	252
RNA-Seq Expression	HG10019269.1
Synteny	HG10019269.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAGGGTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTTAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTAGAGTGCCTCCACCATTCCAAGGAGGTAAGACCTTCCATTTCCCTTACTCTCTTGCTTCTGTTTTGATTTTCTTCCAATCGTTCATGTGTAGGTTAGGTTGATTGCCTGTGTAGGGATTAGATATGTGGTTCCTTGTTCCTTTGAACTTCTGTCGCCTAATTCGACCGCGGCTCATGTTTTCGACATGGCATCCGAAGGCGGTTGCGTGAGATGTGGTTTAGATCTGTTTTTATATGTAACTTGTTGATTGACAAAATTTCTGGAGGGATTTGAATTTTTGGCTACTTGGATTTTTGTGGTTTTAGGTGATAGTGATCGATTAGGGAAAGTCGCGTCATGTCGACGATTAAATAAGATTATGTGGCCTCCGTTTCCAGTTCCACATAGTTTTTCAACATTTCGATGAACTTTTTAGAGTTTTCATTAACAAGAAAGAATGTTTTAGGGAAGCACAGTGGAGCCCTCTGTCTCCACCTCTTACATTTTGGTTCCACCTCTTACATTTTAAGTTTTGTGTCTAATGAGGGAGAGGGATAGGTCAACTTTATTGTTTCAAGTGAACGGTTTGCCACACATTGCGTGGTATAATCTATTTAGGCCAATCCTAGCTTAGTTCAATGAAAGTCATAATCAGTTTAGGAATCCCTTTGAGTTCGGGGACATCCGATAAAATAATCAGTTTAGGAGTTTCTGCTAACACACAATAGTGTGTTTATGTTACTGAGCATACATCCTCTCTGTGAAGATATGTGTCTGTGTACACTTACTCTAACAACATTGAGTTCTGCCTTCTAAGTTTAATGTAAAGAGTTTGTTTTATTCCAAAAGAAAAAAAAGGGGGTAGTGGGATATGTTTTTGGTAAATTGAATATATAGATGCTTGATTGTTAAAATAAAACAGCACACCTTTATGTTGTTGAAGATATAACTTACCTATGAAGATTTGAATTTGTGAAAAGCACAATTGATTTTAAACTGTGATAAGCACAATCGATTTTTGGATTATGTGGCATCTTTTTGCATGCTTGCGTTCGGCCTTGGCATCAATTTTATTAATCAACAAACACACGGGAGGGATTTAAGAGCTCTCCTCTCTCCCAATTCTTATAGGAATAATGACTTTCATTGAGAAAAAAATAAAAGAATACAAGGGCATACAAAAAACCAAGCCTACAAAAAACCCTCTAAAGAAAGAGTTTCCCACGAGTAAGATGCTACCTAGCCAAACAATATATATATATACACACACACACACACACTCAGCAACCCAAGTCCCCCAAACTAACAATTTTCTTTGGGGCCTACACACACACAACATTCTCTCTCATGTAATTACAATTTTGCACCTCTCTTCTTATGCCTACGTGTATAAACTCTCATAATTGGGGCCAATTAGCTTGTTAAAATGAATAATAGAAGAATGTCGTGTATCTATGTGGGAGAAAGCAACGTTAGTTGCGAACAATTAGGAAGTATAAAAGTAAGCTTCTTTGTTGTTGGGGTCAATGGACATTTTATCTCTATGAGCATTTTAACAAGCTGTGCAACTACAGTGTTTCAACGTCTTGGTGATAGAGGTGATCTACTCAAACCAAAAGACCGACCGAAACCGATAACGATGGCCAGTTTTATGCACTGTACAGTCAGTGGTCGGTTTTTCTGACAGTCAGCCAACAAGCCCAAAAATAGCTCATTGACCTCATTGACCAAACTCGACCGCTTAGCTATAATTTAGAAAAAAAAAAACCTGTGCTAGGAGGTAGTGCACGCACACAGTTACAAAAAAAAAAAGTTATTACAATAGCCATTAGGTAATCATTACCTATTAAGGTTAAATAAACATTTTTTTGGGCTAGAAAATGCCCATAAACTTTGAACTTTGTGTAAAAGATACCCCTGAACTTACATAGTTTAAAAAATATCCTTAAACTTTCTAAAAGAGTTCAAACATACCCTTGCCGTTAGTTTTGAATGGAAACTGTTAAAGTTTTATTTTAAAAGTACACCGAACTTTCAAAAGTTTCAAAAATACTCCTAACTTAAAAAAAGTTAAAAAATACTTTCACTGTTAATATATGAACAAAAACTGTTAATACCTCATTGCAAAAATAACTTTAAAATTAAAAAAAAGTTTAAAAATACTCCTACCATTAATATGGTGATCAATTTGTTTGAAGTTTTCTTAAGTTTGGAAAGTACCAATTCTAAAACAAATTATATATAGATCCTCATTTTTTTTTTCATATAGATACTCTCAACTTTCTCTTAATTTTCCACTTCTTAGCTTACACCAATTTTCTGAGCAGCCAAAATTTTAAGTTAGAATATAAAATCCCACAAAATCTCACAAAATTCCAAAATCAAAATCTTCCCGTATAACACAAGAACGATAAATAGTAGAATAAAAAAAATGTAGTTGGTTATTAACGCACACTCAACTACTAATGTACAACTTTGTTAAAAACATTTAAATACCAAAATCCCTTGGTGCTTCCTTTATGTGCAACTTTATTTATTTATTTTAGATTTTAGATAAACAAATGTCAAATAGTTAGCGAAAAAAGGGGAGTAAGAGGGGTATTGAAGAAGGGAGGGGAGAAAAAAATGGAAAATAGAGAAGTAAGATGATATTAACAGTTTATGTTTGTATAACAGTAAGGATATTTTTGAAGTTTTTGAAAGTTCTGGGGTATTTTGATACAACACACTAATGGTTTCCATCCAAAACTAATAGTAAGAGTATTTTTGAACTCATTTTTGAAGTTTAAGAGTATTTTTGAAACTTTTGAAAGTTCAAGGGTATTTTTGACATAAAGAACAAAGTTTAGAGGTATTTTGAATAATTTAGCCTTTTTTTTTACTTCTTTTCATGTACGATTCGACATGTCTTCTTCCTTCCTTCCCTTTCTCTTTGTTTTATCTTGTTCTTTTACCATCTTTCATTATTTTTTATTTTTTATTTTTTATTTTACTTTTTGCTTTCAAGTTTTCCTTCATGAAGTCTTCCATGACCAATGGTGCACACTATCTATCGTAGCCACTGGCCGGTAACTCTATGATCAACGTTGTCATTCATCTTTTCTTCTCCCTTCTATTCTCTTCTCAATGACAACAAAGTTACCTTCTGAAAACTGATAAAAACCAGCCTACTGTTAGTGTGGTCGGTTGGACGATGTCTCCACTTACCCTAAAATTGTTGGAAACGGATGTGCTGGTGGCCCGCGACAGTTTTCCCGCAAAACTGATGCCAACCGACCGATGATCACCCCTACTTGGTGATGAAATTCTCCTCCCCCATCTCATTTTGCTAAAGTTATGTTATGATATTTTGTCTATTTTTAATTGTTGTTTTTTAGCCTTTGGGGGCATTTGGATCTTTTACCATGATGTAGCCTAAGTGACTTAAAAGAAAATTCTCTCCATGAATTAATCAAATGTTATTATGAATCAAACCCTAAACCCTACAAGATACCATGAACATTGGCAGCTCCTTTTCTAATTTCTTCCAGTGCTTTAAGATTGATGCAAGATACGCCAACTACTTTGCTAGTTTCAGAATAACTGTAGTAGGAAGTGACAAGCTTTCTTGAATAAGCTTCTGTTTGTTTGTAACCAAGAGAATATTTTCTGGTTTTGAACGTCATTCTAGCATTTTAGTATTCCATTCTTGGACGATTCTTTGGAATTTTCTCCTTAAAAGGTTTCCCCTTGTAATTTGGTATGTTGTTCTGAAACGAACACATCTCACGAAACATTCTCTCTTGCAATGGGCCTCACCAAGAGAGTTTCTTGGTCTTCCATCAGTGGCAACTAACATTGGCCTAGACGTTCGCGCTAATACCAAATTGATGTAGTCTAAGTGACTAAAATGAGAATTTTCTCTAAGAATTAATCAAATGTTTATTATGTATCAAAAGTTGTGCATACGTGAAGACATTTATAGAGAATTGGAAAACAAACTAATCCTAATCCTAATTGTGGAAACTATTCTTAATCCTAATCAATTAAGGATTTGACGAAGATACCTTAATTTATCCTAATCCTACTACATCCTACCACTTCATAATTTTCAATTTTTTTTTGTTATATCCTTGATAGATCCCTTCTTTTAATGTTTGCATCGTCACCATCAGCTTTGCAAATATGAAGATCTAAATAAACCTCATCTAAATTTGTTACATTTTATGGGCTAAATATGTGTAAGTCTAATATTCGAGTGTTTCTTCAATTTTGTCCTCTATTTTTTAACATTTTTTAAGTTATGTTCTTCCCAATGGTAAATGTTAAAATTGGCTTATGATAAGTTTACATTTGTATATCCTTGGTGAGTTGGCAAAAATTTAAGAAAGGAATTATGCCATTTAAGTAAGGAAATTTTCCAACTTTTCCTCTAAGTTGATGGACATTTTGACATTCCTTCTTTTTGATGGTCTACTTTCTCTCCTCAATTTTTGCCATCTCACTAAGTATCATATCATAAATTTAACAGTCATGATTCATGGATGGGAATGATATAATTGAAAAATATTAAATCATAAGGATCTAAGTTGAAACTTTTAAAACAAGAGAGACTACATTGGAAGAGAACACCCAAACGTAAGGTACCAAAAGAGATATTTACCCTTTTAATGGCATGGTAAATTACTCCCCTTGTGCCTTAGCGGTTCTTTCCCCACTTTTGGTTTAGACGTTGGTACCTGCTACTTGTTAAGTTTGTCTTCATTATTAGTTCTTAATGATAGCCTTGTGCATATGACTTCTGGAAAGCACTGGTGTACATTTTTTTTCCTTTTTTTCTTTTTCTTCTCAAATGGATTTTCTCTCTCGTTTTTACTTTCATTTATCTTGAAGGTAAATGGATTATGCTAAAAATTGACTTTATTTATTTATACCTAAATCAGTAAATCTAGCACCAAGTAACAAAATCACAGTGCTAGGTTTTTGTAGGAATAAAGTTTTAACTTTTTTAGCATGATCATAGATTCACCATGCGTTCAGATGATCTTTTCTGTTTTTTCGGGGGATATGTTGCTTTCTTGAGACAGAAATGAATCTTAATCCAATTACTATTTTTGTTGCCACGGATATTGGAATATTATTCCTTCTGTGCATGTCGTTGAGCGGTGTGGTCTCTGCTCTGCAATTGCTATCACGCTATATGGATAAGTTTGTTATATCACTTGTAAGCACAGTTTAGTATTCATGTGGAAAAAGGTAGACAGGTGGATTTTTAATTGAATTAATTTATTTTATTTTTTGCATCTCTAATAACATCATTGGTTGATTCACTAGTCCAAAGTGCAAGCTGTTATCTTACATGCACTTGAGGTTTCAATCATGGTTCAAAACTTAAATTATAGCTACTATCGACCTATGATACTAGAAATATTTAACTAGTATTAGTACTTGCGATTATTCCATAGAATTAGTCATGCACCACGTCTTTAAGAACCAAAATTTAAAAATCAGGTATTTTATAGTGAGTCGAGCTGGTACTTGATTCTGTCAATTACTAATTTGACCTTGATGACAATACCACACATAAATGGGTTAGATTATGTTATTGTGTGTGTGTGTGTTTTATCTTATTTTATTTTTTACATATAAATTAGTTAAATGAATTCATGGAACCATTATGATTGTGAGTTGAATTCTAATATTTATTAATTGAGTGGGGTATTCAATTAGATGATAAGAGAATGATTAACTCAAAATTCATTATATAAGGATTAAGCACGTCACTGTTAAAGAATAGGAACACATGGATAAACATCCAAAATGGTAGGAGTATGATCTGCTTTTATTAAGAATGATTCTGCCTGCTTTATAAGTATCCGTTCTAATTCAAGTTGCTTTGTTTGGACCATACCTTATAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAACGTAAACTAAGGGCAGCCGAACGGGAGGCCAAAGAGGGTAAACATGCTGATGCTGCTCATGCATAG

mRNA sequence

ATGGCGTCAGGGTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTTAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTAGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAACGTAAACTAAGGGCAGCCGAACGGGAGGCCAAAGAGGGTAAACATGCTGATGCTGCTCATGCATAG

Coding sequence (CDS)

ATGGCGTCAGGGTGGGGAATCACCGGGAACAAGGGCCGATGCTACGATTTCTGGATTGATTTTAGCGATTGTATGTCCCGCTGCCGAGAACCAAAGGACTGTGCTCTACTCCGTGAAGATTACCTAGAGTGCCTCCACCATTCCAAGGAGTTCCAAAGAAGAAACCGTATTTATAAGGAGGAGCAACGTAAACTAAGGGCAGCCGAACGGGAGGCCAAAGAGGGTAAACATGCTGATGCTGCTCATGCATAG

Protein sequence

MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAAEREAKEGKHADAAHA

Homology

[Close]

BLAST of HG10019269.1 vs. NCBI nr
Match: XP_022155272.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 8.6e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAAEREAKEGKH DAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. NCBI nr
Match: XP_038905985.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAAER+AKEGKH DAAHA
Sbjct: 61 EQRKLRAAERDAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. NCBI nr
Match: XP_011652934.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucumis sativus] >KGN52808.1 hypothetical protein Csa_015424 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAAEREAKEGKH DAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. NCBI nr
Match: XP_022948762.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita moschata] >XP_022998534.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita maxima] >KAG7036666.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAA+ EAKEGKH DAAHA
Sbjct: 61 EQRKLRAAKGEAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. NCBI nr
Match: XP_023521877.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.2 bits (422), Expect = 6.2e-38
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLR A+ EAKEGKH DAAHA
Sbjct: 61 EQRKLRVAKGEAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. ExPASy Swiss-Prot
Match: Q9LZI6 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana OX=3702 GN=At3g62790 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKE 75
          EQRKLRAA R+ +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of HG10019269.1 vs. ExPASy Swiss-Prot
Match: O82238 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana OX=3702 GN=At2g47690 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-34
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EQRKLRAAER---EAKEGKH 78
           EQRKLRAA R   EA +G H
Sbjct: 96  EQRKLRAASRKGEEAGDGTH 115

[Close]

BLAST of HG10019269.1 vs. ExPASy TrEMBL
Match: A0A6J1DNW8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Momordica charantia OX=3673 GN=LOC111022414 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAAEREAKEGKH DAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. ExPASy TrEMBL
Match: A0A0A0KTA7 (Fiber protein Fb14 OS=Cucumis sativus OX=3659 GN=Csa_4G001750 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.0e-39
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC+LLREDYLECLHH KEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCSLLREDYLECLHHFKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAAEREAKEGKH DAAHA
Sbjct: 61 EQRKLRAAEREAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. ExPASy TrEMBL
Match: A0A6J1KEK7 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita maxima OX=3661 GN=LOC111493141 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAA+ EAKEGKH DAAHA
Sbjct: 61 EQRKLRAAKGEAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. ExPASy TrEMBL
Match: A0A6J1GA50 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita moschata OX=3662 GN=LOC111452335 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          EQRKLRAA+ EAKEGKH DAAHA
Sbjct: 61 EQRKLRAAKGEAKEGKHVDAAHA 83

[Close]

BLAST of HG10019269.1 vs. ExPASy TrEMBL
Match: A0A6J1F476 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita moschata OX=3662 GN=LOC111442238 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDC LLREDYLECLHHSKEFQRRNR+YKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCTLLREDYLECLHHSKEFQRRNRVYKE 60

Query: 61 EQRKLRAAEREAKEGKHADAAHA 84
          E+RKLRAAEREAKEGK  +AAHA
Sbjct: 61 EKRKLRAAEREAKEGKQVEAAHA 83

[Close]

BLAST of HG10019269.1 vs. TAIR 10
Match: AT3G62790.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-35
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 1  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 60

Query: 61 EQRKLRAAEREAKE 75
          EQRKLRAA R+ +E
Sbjct: 61 EQRKLRAASRKGEE 74

[Close]

BLAST of HG10019269.1 vs. TAIR 10
Match: AT2G47690.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 144.8 bits (364), Expect = 3.1e-35
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1   MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKE 60
           MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKEFQRRNRIYKE
Sbjct: 36  MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKE 95

Query: 61  EQRKLRAAER---EAKEGKH 78
           EQRKLRAA R   EA +G H
Sbjct: 96  EQRKLRAASRKGEEAGDGTH 115

[Close]

BLAST of HG10019269.1 vs. TAIR 10
Match: AT2G47690.2 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-25
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MASGWGITGNKGRCYDFWIDFSDCMSRCREPKDCALLREDYLECLHHSKE 51
          MASGWGITGNKGRCYDFW+DFS+CMS CREPKDC LLREDYLECLHHSKE
Sbjct: 36 MASGWGITGNKGRCYDFWMDFSECMSHCREPKDCTLLREDYLECLHHSKE 85

The following BLAST results are available for this feature:

BLAST of HG10019269.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155272.1	8.6e-40	98.80	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Momordica charanti...	[more]
XP_038905985.1	1.9e-39	97.59	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Benincasa hispida]	[more]
XP_011652934.1	1.2e-38	95.18	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Cucumis sativus] >KGN52...	[more]
XP_022948762.1	2.1e-38	95.18	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita moschata...	[more]
XP_023521877.1	6.2e-38	93.98	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Cucurbita pepo sub...	[more]

BLAST of HG10019269.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZI6	3.3e-34	89.19	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana ...	[more]
O82238	4.3e-34	86.25	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A OS=Arabidopsis thaliana ...	[more]

BLAST of HG10019269.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNW8	4.2e-40	98.80	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Momordica charan...	[more]
A0A0A0KTA7	6.0e-39	95.18	Fiber protein Fb14 OS=Cucumis sativus OX=3659 GN=Csa_4G001750 PE=3 SV=1	[more]
A0A6J1KEK7	1.0e-38	95.18	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita maxima...	[more]
A0A6J1GA50	1.0e-38	95.18	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita moscha...	[more]
A0A6J1F476	1.1e-37	92.77	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like OS=Cucurbita moscha...	[more]

BLAST of HG10019269.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62790.1	2.3e-35	89.19	NADH-ubiquinone oxidoreductase-related	[more]
AT2G47690.1	3.1e-35	86.25	NADH-ubiquinone oxidoreductase-related	[more]
AT2G47690.2	2.9e-25	92.00	NADH-ubiquinone oxidoreductase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..78
None	No IPR available	PANTHER	PTHR15224:SF5	BNAC04G00180D PROTEIN	coord: 1..82
None	No IPR available	PROSITE	PS51808	CHCH	coord: 11..52 score: 11.175484
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PFAM	PF10200	Ndufs5	coord: 12..65 e-value: 2.0E-6 score: 28.0
IPR019342	NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5	PANTHER	PTHR15224	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5	coord: 1..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019269	HG10019269	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019269.1-cds	HG10019269.1-cds-Chr04:19559504..19559653	CDS
HG10019269.1-cds	HG10019269.1-cds-Chr04:19565506..19565607	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019269.1	HG10019269.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005747	mitochondrial respiratory chain complex I