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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA mRNA sequence ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA Coding sequence (CDS) ATGTCATCCAAGCTTTCTCCGGCTATCTCTAAACCCCAAGCAGATGATAATCTGCCACCCTCTACTCTATCTCTTGGTATCGAATCCCAAGCTCTCGACCCTTGTCCCCGATCCCAATCCTACCCGTTTTTATATGGGCCAAATGGAAAAAGTAGACTTCTGGATGCCCGCTTAGAGGGAGAGTTGGATGGGCACACACCATCAGCTATATGGACATGGAGCAAATGGAACCTCTTCTGA Protein sequence MSSKLSPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGHTPSAIWTWSKWNLF
Homology
BLAST of HG10019266.1 vs. NCBI nr
Match: TKS02681.1 (hypothetical protein D5086_0000160820 [Populus alba]) HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24 Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0
Query: 6 SPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGH 65
SPAI +PQA DNLPPSTLSLGIESQAL+PCPR +SYPF YGPNGKSRL DARLEGELDGH
Sbjct: 65 SPAIPEPQAGDNLPPSTLSLGIESQALEPCPRPKSYPFSYGPNGKSRLPDARLEGELDGH 124
Query: 66 TPSAIWTWS 75
TPSAI W+
Sbjct: 125 TPSAICGWN 133
BLAST of HG10019266.1 vs. ExPASy TrEMBL
Match: A0A4U5PZP9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160820 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25 Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0
Query: 6 SPAISKPQADDNLPPSTLSLGIESQALDPCPRSQSYPFLYGPNGKSRLLDARLEGELDGH 65
SPAI +PQA DNLPPSTLSLGIESQAL+PCPR +SYPF YGPNGKSRL DARLEGELDGH
Sbjct: 65 SPAIPEPQAGDNLPPSTLSLGIESQALEPCPRPKSYPFSYGPNGKSRLPDARLEGELDGH 124
Query: 66 TPSAIWTWS 75
TPSAI W+
Sbjct: 125 TPSAICGWN 133
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TKS02681.1 | 1.3e-24 | 84.06 | hypothetical protein D5086_0000160820 [Populus alba] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A4U5PZP9 | 6.1e-25 | 84.06 | Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160820 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| HG10019266 | HG10019266 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10019266.1-cds | HG10019266.1-cds-Chr04:19499119..19499358 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| HG10019266.1 | HG10019266.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005739 |
mitochondrion |
|
