HG10019032.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019032.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 14563763 .. 14564119 (-)
Sequence length	357
RNA-Seq Expression	HG10019032.1
Synteny	HG10019032.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCAATTTCCACCTCCAAAAATCGAACATTCCAGACTTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATCCAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCTCCACCACTTCCAGCGACGACAAATCCCTCCCCTCCGCTGCAATGGAAGACGACGGGAGCCTCACCAGCCGCCGCCGAGCCACTGCGCCGCCTACATCCTCTCTCATAGAACACATCTTCGAAGAAATTGGAGACGGTCCGAATCGGAGGGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTGAAATGA

mRNA sequence

ATGGCGAAATCAATTTCCACCTCCAAAAATCGAACATTCCAGACTTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATCCAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCTCCACCACTTCCAGCGACGACAAATCCCTCCCCTCCGCTGCAATGGAAGACGACGGGAGCCTCACCAGCCGCCGCCGAGCCACTGCGCCGCCTACATCCTCTCTCATAGAACACATCTTCGAAGAAATTGGAGACGGTCCGAATCGGAGGGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTGAAATGA

Coding sequence (CDS)

ATGGCGAAATCAATTTCCACCTCCAAAAATCGAACATTCCAGACTTCCTTCTTCTCCGATTCCGAAATCGACGTCGCAATCCAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACCACCTCACCGCCTCCTCCACCACTTCCAGCGACGACAAATCCCTCCCCTCCGCTGCAATGGAAGACGACGGGAGCCTCACCAGCCGCCGCCGAGCCACTGCGCCGCCTACATCCTCTCTCATAGAACACATCTTCGAAGAAATTGGAGACGGTCCGAATCGGAGGGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTGAAATGA

Protein sequence

MAKSISTSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASSTTSSDDKSLPSAAMEDDGSLTSRRRATAPPTSSLIEHIFEEIGDGPNRRGRKRRSRSVYEIYKLTKPVISVK

Homology

[Close]

BLAST of HG10019032.1 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 89/124 (71.77%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MAKSISTSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASSTTSSDDKSLPSAA- 60
           MA+S+STS+NR FQTS FSDSEIDVAIQLIHLSEDSDYHD L ASST+ SDDKSL SA+ 
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60

Query: 61  -----MEDDGSLTSRRRATAPPTSSLIEHIFEEIGDGPNRRGRKRRSRSVYEIYKLTKPV 119
                MEDDG    RR     P    IE I+EEIGDG NRR RKRRSRSVYEIYKLTKPV
Sbjct: 61  SNADEMEDDGRNNGRRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV 120

[Close]

BLAST of HG10019032.1 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-33
Identity = 91/126 (72.22%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MAKSISTSKNRTFQTSFFSDSEIDVAIQLIHLSEDSDYHDHLTASSTTSSDDKSLPS--- 60
           MAKSIS+ KNR F+TS FSDSEIDVAIQL+HLSEDSDY  +  ASST+ SDDKS+ S   
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 61  ----AAMEDDGS-LTSRRRATAPPTSSLIEHIFEEIGDGPNRRGRKRRSRSVYEIYKLTK 119
               A MEDDGS  +SRR AT  PT+SLIE IFEEIGD  NRR RKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

The following BLAST results are available for this feature:

BLAST of HG10019032.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588821.1	2.9e-33	71.77	hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571728.1	3.8e-33	72.22	hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10019032.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019032.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019032.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10019032	HG10019032	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10019032.1-cds	HG10019032.1-cds-Chr04:14563763..14564119	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10019032.1	HG10019032.1-protein	polypeptide