HG10017054.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017054.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 10620768 .. 10624054 (-)
Sequence length231
RNA-Seq ExpressionHG10017054.1
SyntenyHG10017054.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAATCGGAATGAAATTGACGACTGCACTTGGTCTATGTGCAGGGAGGTGTGTGGTGGGGTTTTCTTGTCACGCATATTCAAACATTTTTAAAAGATAATGCCAGTCAAAGATGAGTGTGATTTTTTGCAAATTTATCAGATATGTTTTTCCACTTCGTTGGTAACTGTTTGTAACTAGTTTAGATTTATTTTTGCGATAAAGTAGCCTATAATTCAGCCAGTTATCTGTTTAATTAGGTTGTCCTCGTAGGCCATCATCAATTCCTTCTTTATGATTTATTTTTTTTAGGAAGTTTTCCACGGAGGATGTCGAGAAACTTTTTGCATCACCAATTGTTGCACCTGATGGAGAATCTCAAAAGGTTTCCTAAATTGTTTTTTATTTCAGGAGAAACAATGTGGCATAAAAAAGATGGACATTGATTGTTTTTTCTTATTTGTCTACTTCTATTGTTATTATTTATTTTGAAAAAAAAAAAATCTCTATTTTCCTGTTAAAATAAAGTACAATCAAAGTTTCTATATGGATTTTACAAAAGAAAATTTAGGGAAATTAGAACAACCGCATCTCACATAATTCTTTATATCTTATTGTACATTTCAAATACAGAATATTGTGTTCAAGTTCTGCACAATTTCTATGAGCTTTCCTTTCACATTTTTTAAATTTTCGTTCTTGAATGAATATACCTTTTTATCAAATGAAATATAGGAGCTGAAACGGGAGGAGTTTCATCTGTTGCCACTGCTTGTTCGCCAACACCAGAGGTATTGTCACCACAATTCTCATCATGAAATATTTTCCTACTAAATTTGTTTCTCAATTATTTATTTTTTTTTAAAAAGCAGATGTATCTATTTGAGAAAATAACTTTGAAACTTAAATTAAGATTGAAAGCCACCATGAAAATTCATTTTATGGGTTTATTGCAAAATGTATGCACATTGAAATCTTATGTACCTAGTAGCTCTTAATCTGAATGAATAGCCATTGAGGAAACTATGATGCCTTTATGGTATTATATGGAGTTTAAACTTGATGATTTTGTCTTGCTTTAATAGTATTGTGGCGTGGTTTAAGCAAAATTAATTGAACAATTTCCCTTTTCTTCTCGAAGTGCACTCTAGTTGCTCCCACTTTTATCCTTCTCCCTAGTCTCTTCCACTAATTTTTTTTTTGCATTTGCTGTATACCTCCTATTATAGAATTTTGATTATTTGCGATTGTGATGCTTGTTTCAGATTGTTGACCAAATATGCCGATCTTATGTCTTGTTTCAAACAATTTTCACTGTAAATAAATTAGGACATGGTTTTAATAAAAGGGGTTTTAGAGAGAAAGAGTTTCATCCATGGTGGCCACCTACTTAGTATTTAACATTTAACATTTTACGAGTTTTCTTGACACCCAAATGCTATAGTGTTGGGCGGGTTGTCTTATGAGTTTGTTTATGAGTTTTGATTATCCATCTATGGTTTATCCTAATGCTATTCGAAATTTAAAGTAAATTCTGTTTTTTTTTTTTGGAAAAAATAAATCATTTATAGCTAATTTCTTTTCTTTAAAACTCAACAATATTAAAGTATATGGTTATGTGTTTCACAATATTAAGATAAAGATGGAATATTGTTAAGAAATCTGTGTTTTGTATTTTGTACTTGAGCCATGTTTGTGGAGAAGTTGACAAAAAATACAACCCATTTAATATGCAGGTTTTCTGATGGGCCAAAGTATGAGGCTGCTCTTCAATGGGGAATACATTTTAATTAGAGCGGAATGGATATATGTGTATCAGATAGGTACCTTCATGATTCTGTTTCCCTTCATTATTCATGCATTTCCTGATTGAAATATTGAACTTGTTGTGGTTATCTTTCTTTACTCTTAGATAGGATACTGTTTGGATACAAAAGTTTTAGAGTAAGCTTGTTACTTTTGATTTGTTTGATCCCAAAGAAGTTAAGCTCAGTCACAAGTTCAAATCTTGGGATATTTATGTCATGTGAAAGCACCATTTTTTTTAAAAAAATTCTATTTTGGTTAAATATAAGTTTAGTCCTTGAACTTTTATGTTTTTGCTGATTTGGTCGTTAAACTTTGGAAGTGTCTAATAGTAGGAGTGAACACTAAAACCGACCAAACCGAATTGAATAGCAAAATTGAACAAAAAAATCGATTTTTACTAAAGCATTGGTTCGGTCGGTTAAAAATCATAAGGAAACTGAATTTTTCAGTTCAGTTTTGGTTTTTTATTTGAAAACTTGCTCTATTCGGTCGGTTGCAGGAGGTATCTAAATGGTTGCAGGAGATATCTAAATGGTTGCAGGAGGTATACAAATCCCAGCATTAGAAGTAAGTCATTAATTTACTTTTGTTATTTCTTTCTTTGTTTTGCTCTACCTTAAAATTTTTGTTTGAAGATGATATATTACCATTTGAAGCTGGACAAAAGTAAGCATTCTTTTTGAAATTGGTTTTAGCTTCTTTTATAAAAATGAAAACAAAGTTAAAAATTTGAATGTGTTTATAAAATTTACAGCTGATGATAACATAAAAAGTTTTGAAAAAAGAATTATGTCAAATTATTTCTAAAAAAATATTGTTTTACCTTATATTATAAATAATAATTAACAACAAAAATTTCAAAGTTATTGAAATTTAATAATTGAATAAATTTTCAAATAAAAGTTAAAATACAAAGAAATTAAGACGGTAAATGCATTCATAAAAAATGATAAATAATAATAATAAAAAAAAATACACAGACGTTGTCAATTTGCATATAGAAGTTGGCTGCTTAGTTGCTGTGGTTGGAGGTACTGGTGAAGGAAAAGCATCACCATGTTGGCAATGACAGGGGAGCACGTTGAATTCAGAGGGACAGTAAAATTTTTATATTTTTTTAAATAGTTTTATATTTTTTTTTTATTTATAGTAATTTCCCACCAACAAATTTCATTTTTTGTTTTTTAAATCCCGCAGCCCCCCTCTCTCTATCTTTCTCCCTCTCTCACACTTACTCTCATTCGCACGCACGAGATAAGCCAACGAAAAAGAAATACTCTTCCTCACTCTCACGCCTCCCATCGCAGGCCAACCGGTTCGTCGCCGTCGCTCAACGGTAAGCCTCATCCGGTCTATCCCATTTCCACTCTCGATTTCTCTCTCTTGCAGCCTCTCACTCATCGCCGCACAACCGTAGCAGACGCCAGACTTTCGCTCAACTCCGTTGCCGTCGCTGTCTTCGCAGGCCACGACCACCGCGCGCCGTCGTCGTAA

mRNA sequence

ATGAGTGGAATCGGAATGAAATTGACGACTGCACTTGGTCTATGTGCAGGGAGGAAGTTTTCCACGGAGGATGTCGAGAAACTTTTTGCATCACCAATTGTTGCACCTGATGGAGAATCTCAAAAGCCTCTCACTCATCGCCGCACAACCGTAGCAGACGCCAGACTTTCGCTCAACTCCGTTGCCGTCGCTGTCTTCGCAGGCCACGACCACCGCGCGCCGTCGTCGTAA

Coding sequence (CDS)

ATGAGTGGAATCGGAATGAAATTGACGACTGCACTTGGTCTATGTGCAGGGAGGAAGTTTTCCACGGAGGATGTCGAGAAACTTTTTGCATCACCAATTGTTGCACCTGATGGAGAATCTCAAAAGCCTCTCACTCATCGCCGCACAACCGTAGCAGACGCCAGACTTTCGCTCAACTCCGTTGCCGTCGCTGTCTTCGCAGGCCACGACCACCGCGCGCCGTCGTCGTAA

Protein sequence

MSGIGMKLTTALGLCAGRKFSTEDVEKLFASPIVAPDGESQKPLTHRRTTVADARLSLNSVAVAVFAGHDHRAPSS
Homology
The following BLAST results are available for this feature:
BLAST of HG10017054.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10017054.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10017054.1 vs.
Match NameE-valueIdentityDescription
BLAST of HG10017054.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10017054HG10017054gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10017054.1-cdsHG10017054.1-cds-Chr03:10620768..10620872CDS
HG10017054.1-cdsHG10017054.1-cds-Chr03:10623686..10623758CDS
HG10017054.1-cdsHG10017054.1-cds-Chr03:10624002..10624054CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10017054.1HG10017054.1-proteinpolypeptide