HG10010358.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010358.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	phylloplanin-like
Location	Chr06: 21438625 .. 21438897 (-)
Sequence length	273
RNA-Seq Expression	HG10010358.1
Synteny	HG10010358.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGCGGAGCCGGAACTGTAATTTCGTCCGTCAAAACCGATGCGACTGGCACTTTCTCAATTCTTCTCGATGCTCCTCAATTATTGCTCTCTTTTTTACTCACTAATTGCAGTCTCGTCGTCACCACGCCGCTCGTCCACTGCAACGCCGCCCTGCCGTCGTTCGGCGCCCTCGTCTCCCCGCTCCAGCTCATCGGAAATACCTTCCTCGGACTCTTCAATGTCACCAATTTCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAA

mRNA sequence

ATGGAATGCGGAGCCGGAACTGTAATTTCGTCCGTCAAAACCGATGCGACTGGCACTTTCTCAATTCTTCTCGATGCTCCTCAATTATTGCTCTCTTTTTTACTCACTAATTGCAGTCTCGTCGTCACCACGCCGCTCGTCCACTGCAACGCCGCCCTGCCGTCGTTCGGCGCCCTCGTCTCCCCGCTCCAGCTCATCGGAAATACCTTCCTCGGACTCTTCAATGTCACCAATTTCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAA

Coding sequence (CDS)

ATGGAATGCGGAGCCGGAACTGTAATTTCGTCCGTCAAAACCGATGCGACTGGCACTTTCTCAATTCTTCTCGATGCTCCTCAATTATTGCTCTCTTTTTTACTCACTAATTGCAGTCTCGTCGTCACCACGCCGCTCGTCCACTGCAACGCCGCCCTGCCGTCGTTCGGCGCCCTCGTCTCCCCGCTCCAGCTCATCGGAAATACCTTCCTCGGACTCTTCAATGTCACCAATTTCATTCCGGTAGGGTTCCGATTCCTTCCGATTCTTTAA

Protein sequence

MECGAGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGALVSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL

Homology

[Close]

BLAST of HG10010358.1 vs. NCBI nr
Match: XP_038906580.1 (phylloplanin-like [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 9.7e-37
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MECGAGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGALV 60
           M+CGAG V+SSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLV CN ALPSFGALV
Sbjct: 63  MQCGAGIVVSSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVDCNTALPSFGALV 122

Query: 61  SPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
           SPLQL+GNTFLGLFNVTNFIPV FRFLPIL
Sbjct: 123 SPLQLVGNTFLGLFNVTNFIPVAFRFLPIL 152

[Close]

BLAST of HG10010358.1 vs. NCBI nr
Match: XP_022930243.1 (phylloplanin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 132 MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 191

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 192 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 222

[Close]

BLAST of HG10010358.1 vs. NCBI nr
Match: XP_022930242.1 (uncharacterized protein LOC111436755 isoform X1 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 149 MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 208

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 209 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 239

[Close]

BLAST of HG10010358.1 vs. NCBI nr
Match: KAG7026315.1 (hypothetical protein SDJN02_12816 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 65  MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 124

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 125 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 155

[Close]

BLAST of HG10010358.1 vs. NCBI nr
Match: KAG6593974.1 (hypothetical protein SDJN03_13450, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 146 MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 205

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 206 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 236

[Close]

BLAST of HG10010358.1 vs. ExPASy Swiss-Prot
Match: Q56S59 (Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1   MECGAGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGALV 60
           + CGA  VISS  T+ +G FS+ ++      +F L NC+LVV TPL  CNA L S G L 
Sbjct: 64  LRCGATNVISSTITNGSGAFSLAVN------TFPLLNCNLVVATPLSTCNATLQSVGRLA 123

Query: 61  SPLQLIGNTF---LGLFNVTNFIPVGF 85
           S L+L+  T     GL  V    P GF
Sbjct: 124 SSLRLVNITLGSGTGLIRV-GLAPTGF 143

[Close]

BLAST of HG10010358.1 vs. ExPASy TrEMBL
Match: A0A6J1EPU9 (uncharacterized protein LOC111436755 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 149 MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 208

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 209 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 239

[Close]

BLAST of HG10010358.1 vs. ExPASy TrEMBL
Match: A0A6J1EUI5 (phylloplanin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MECGA-GTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CGA GTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN A+PSFGAL
Sbjct: 132 MHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMPSFGAL 191

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLIGNTFLGLFN+TN IPVGFRFLPIL
Sbjct: 192 ASPLQLIGNTFLGLFNITNIIPVGFRFLPIL 222

[Close]

BLAST of HG10010358.1 vs. ExPASy TrEMBL
Match: A0A6J1KIA9 (phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111494688 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.1e-33
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1   MECG-AGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           M CG AGTVISSVK+DATG FS+LLDAPQLLLSFLL NCSLVVTTPLV+CN ALPSFGAL
Sbjct: 65  MHCGAAGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGALPSFGAL 124

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
            SPLQLI NTFLGLFNVTN IPVGFRFLPIL
Sbjct: 125 ASPLQLIRNTFLGLFNVTNIIPVGFRFLPIL 155

[Close]

BLAST of HG10010358.1 vs. ExPASy TrEMBL
Match: A0A1S3C7U3 (phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103497845 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   MECGAGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGALV 60
           M+CGAGTV+SSVKTDATG FSIL+DAP+L+L FLLTNC+LVVTTPL  CNA LPSFG LV
Sbjct: 64  MQCGAGTVVSSVKTDATGNFSILIDAPRLMLPFLLTNCTLVVTTPLFDCNAELPSFGVLV 123

Query: 61  SPLQLIGNTFLGLFNVTNFIPVGFRFL 88
           SPLQLIGNTF GLFNVTNFIPVGFRF+
Sbjct: 124 SPLQLIGNTFHGLFNVTNFIPVGFRFV 150

[Close]

BLAST of HG10010358.1 vs. ExPASy TrEMBL
Match: A0A6J1CAI6 (phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009877 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   MECGAGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGALV 60
           M+CG+GTVISSVKTD +G FS+LLDAP LLLSFLL NCSLVVTTPL  C+AALPSFG L+
Sbjct: 65  MQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPSFGGLI 124

Query: 61  SPLQLIGNTFLGLFNVTNFIPVGFRFLPIL 91
           SPLQ IGNTFLGLFNVTN +P+GFRFLP L
Sbjct: 125 SPLQRIGNTFLGLFNVTNIVPLGFRFLPFL 154

[Close]

BLAST of HG10010358.1 vs. TAIR 10
Match: AT3G16660.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-16
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1   MECG-AGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           ++CG    V+S+  T+A G FS+  D+ Q+LLS LL++C +VVTTPL  CNA LPS G L
Sbjct: 92  LQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLSTLLSDCRVVVTTPLSTCNANLPSVGNL 151

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGFRFL 88
           VS L +IGN+  GL N+ + IP GF  L
Sbjct: 152 VSRLAMIGNSLTGLLNIISIIPAGFGLL 179

[Close]

BLAST of HG10010358.1 vs. TAIR 10
Match: AT3G16670.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1   MECG-AGTVISSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVHCNAALPSFGAL 60
           ++CG    V++   T+  G F+   +  Q+ L  LL +C +VV TP   C+A LPS G L
Sbjct: 66  LQCGNLNRVVAETITNIAGLFTFSTNGIQISLPTLLNDCRIVVPTPRSSCDATLPSTGQL 125

Query: 61  VSPLQLIGNTFLGLFNVTNFIPVGF 85
           +S L L+G+   GL N+   +P GF
Sbjct: 126 ISQLNLVGSIVSGLLNIVAILPTGF 150

The following BLAST results are available for this feature:

BLAST of HG10010358.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906580.1	9.7e-37	92.22	phylloplanin-like [Benincasa hispida]	[more]
XP_022930243.1	2.2e-33	86.81	phylloplanin-like isoform X2 [Cucurbita moschata]	[more]
XP_022930242.1	2.2e-33	86.81	uncharacterized protein LOC111436755 isoform X1 [Cucurbita moschata]	[more]
KAG7026315.1	2.2e-33	86.81	hypothetical protein SDJN02_12816 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6593974.1	2.2e-33	86.81	hypothetical protein SDJN03_13450, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10010358.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56S59	2.8e-07	43.68	Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1	[more]

BLAST of HG10010358.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPU9	1.1e-33	86.81	uncharacterized protein LOC111436755 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EUI5	1.1e-33	86.81	phylloplanin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 ...	[more]
A0A6J1KIA9	4.1e-33	87.91	phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111494688 PE=4 SV=1	[more]
A0A1S3C7U3	3.5e-32	83.91	phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103497845 PE=4 SV=1	[more]
A0A6J1CAI6	2.2e-31	80.00	phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009877 PE=4 SV=1	[more]

BLAST of HG10010358.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16660.1	2.6e-16	51.14	Pollen Ole e 1 allergen and extensin family protein	[more]
AT3G16670.1	1.4e-09	37.65	Pollen Ole e 1 allergen and extensin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040404	Phylloplanin-like	PANTHER	PTHR34458	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN-RELATED	coord: 1..87
None	No IPR available	PANTHER	PTHR34458:SF5	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10010358	HG10010358	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10010358.1-cds	HG10010358.1-cds-Chr06:21438625..21438897	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10010358.1	HG10010358.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane