HG10008582.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008582.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	Chr10: 24369486 .. 24370094 (+)
Sequence length	336
RNA-Seq Expression	HG10008582.1
Synteny	HG10008582.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTGTAAGTGTTCGATTATGCTTAATTTTCTGTAAATCTGTTGAAGAACATAGACAGAATTAATCCATTGGACAGGAAACTGACCTTCAGTTTAACATTTAACCACTGTTTAATGTCAGACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCTATGAAGGTACCATCTCTCCAGTTTCAATGTGTTTGGGTTGAGTCAAATTATTGAGTACTGAACAAGATTATGGTTTTAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGGTAAACTTTCTTTTGTGGGACTTAAGGTCTTTAGCAATGGCACCATGTTTAAGGTTTTGTCTTTGTAAATGCCTGATATTGCAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAATTGGAAGAAGCTGGAAAGAAATAA

mRNA sequence

ATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCTATGAAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAATTGGAAGAAGCTGGAAAGAAATAA

Coding sequence (CDS)

ATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCTATGAAGGATCCATATTATGATTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAGCAAAGGGTTGGAGGACTAAAAGAATTGGAAGAAGCTGGAAAGAAATAA

Protein sequence

MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK

Homology

[Close]

BLAST of HG10008582.1 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 68  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 127

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK
Sbjct: 128 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 178

[Close]

BLAST of HG10008582.1 vs. NCBI nr
Match: XP_008453213.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis melo] >KAA0057951.1 photosynthetic NDH subunit of subcomplex B 4 [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 6.7e-56
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 67  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 126

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 127 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of HG10008582.1 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 68  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 127

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 128 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of HG10008582.1 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 68  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 127

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 128 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of HG10008582.1 vs. NCBI nr
Match: XP_022933404.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata] >XP_023531595.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >KAG6587547.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021522.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 69  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 128

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 129 KDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of HG10008582.1 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-44
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR
Sbjct: 65  MAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYR 124

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
            DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 125 GDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of HG10008582.1 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.2e-56
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 67  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 126

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 127 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of HG10008582.1 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.2e-56
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 67  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 126

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 127 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of HG10008582.1 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.2e-56
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 68  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 127

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 128 KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of HG10008582.1 vs. ExPASy TrEMBL
Match: A0A6J1I7D8 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471485 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 97  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 156

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 157 KDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 207

[Close]

BLAST of HG10008582.1 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR
Sbjct: 69  MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 128

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
           KDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 129 KDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of HG10008582.1 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-45
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR
Sbjct: 65  MAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYR 124

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
            DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 125 GDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of HG10008582.1 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 178.7 bits (452), Expect = 2.6e-45
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR
Sbjct: 64  MAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYR 123

Query: 61  KDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 112
            DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQ+VGGL+ELEEA  K
Sbjct: 124 GDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of HG10008582.1 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 124.4 bits (311), Expect = 5.7e-29
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR
Sbjct: 64  MAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYR 123

Query: 61  KDGGDGTGHWVYE 74
            DGGDGTG+WVYE
Sbjct: 124 GDGGDGTGYWVYE 136

[Close]

BLAST of HG10008582.1 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 124.4 bits (311), Expect = 5.7e-29
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYR 60
           MAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR
Sbjct: 64  MAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYR 123

Query: 61  KDGGDGTGHWVYE 74
            DGGDGTG+WVYE
Sbjct: 124 GDGGDGTGYWVYE 136

The following BLAST results are available for this feature:

BLAST of HG10008582.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880039.1	1.4e-56	100.00	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]	[more]
XP_008453213.1	6.7e-56	98.20	PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis ...	[more]
XP_023516363.1	1.5e-55	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_022987205.1	1.5e-55	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]
XP_022933404.1	2.0e-55	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]...	[more]

BLAST of HG10008582.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	3.6e-44	74.77	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of HG10008582.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWT7	3.2e-56	98.20	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVN6	3.2e-56	98.20	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1JG67	7.2e-56	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1I7D8	9.5e-56	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1EZP2	9.5e-56	97.30	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat...	[more]

BLAST of HG10008582.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.1	2.6e-45	74.77	NDH dependent flow 6	[more]
AT1G18730.3	2.6e-45	74.77	NDH dependent flow 6	[more]
AT1G18730.2	5.7e-29	71.23	NDH dependent flow 6	[more]
AT1G18730.4	5.7e-29	71.23	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 88..108
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008582	HG10008582	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008582.1-cds	HG10008582.1-cds-Chr10:24369486..24369579	CDS
HG10008582.1-cds	HG10008582.1-cds-Chr10:24369696..24369751	CDS
HG10008582.1-cds	HG10008582.1-cds-Chr10:24369825..24369896	CDS
HG10008582.1-cds	HG10008582.1-cds-Chr10:24369981..24370094	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008582.1	HG10008582.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0016021	integral component of membrane