HG10008568.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008568.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	HNH domain-containing protein
Location	Chr10: 24236714 .. 24241424 (+)
Sequence length	666
RNA-Seq Expression	HG10008568.1
Synteny	HG10008568.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTCGTCGGAGGTTCGCCGTTCGTGGTCTGTGATCGCCGGAGAACGAGACTGAGCAAGGGGGCGGCGGCAACGAGGGGAAAGATGAAGGTAGGTGACCTCTCTAGAATTTTTTCCTTTTCCTTTTTTTCCTTTTTTTTTTTTTCTTTATTCCTTTGGCTCTTTTATGACCTCACCAGACAGAACAAATTTCTTGGTTAAAAAGAAATATAACAAATTTCTTTTCCACATCTATGGATCTCAAAAGGTAAAAATTTAAGAATTAATTAAAACAAAATTGGAAAATTACTATAAATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAACTATTTACAAATATAAAAAAATTCAATAGATAGATAATAAAAAAATTTATATTTATAAATAGTTTGACTCATATTTTTTATATTTGAAAACCTACCTTAAAAATTTATAATCTAAAAATTTGAAAATTCAAATATTTTATTTTAATTTACTTTAAATCTAGTTTACTCAAATTAAATTTCAAACAATATCTCAAATAACTCAATTTAAATCTAGTTTACTCAAATTAAATTTCAAACAATATCTCAAATAACTCAATTAAGACTAAAAAATTAACTCTAAATATCAACTCCCTTTAATTAAATTTGATCTAAATTATTTAACTAATATGAAATTTAAAATAAATTTTATTCAACTATAAATTATCTGTATCTAAAAATGTGGGGCGTTACAAAAAGGGTATCTAAAAAAAAAAAATCAATGTCATATAAGACTCATTAAATTGAGATATAATATCAGACAATCCACGTTTATTTTTTATTTTTTATTTTCTCCATTCGACATTGTACATGTCCGCACTCTTGTATTGCGGACATTAAATGCCAACTAGTTGTAATGAGTCAATGATATATGTAAACAAAGCTTGAGTTTTTTTTTTTTTTTTAAGTGTATTTTATAAAAAAAAAATGAACTTTTAAAAAACATTTTTTTCTCTAGTCAATCTAAACATGTCCTAAATAAAAATGAATTATGTTTTGATCAATGTCTTTTAACGGATAATTTAAAAAAAAAAACCCATAAATACACAAAATAGATGGGAATGGATTCTCTTCTAATTAATAGTTTTGAGTAGAGTTGGTGTTAGTCAACGTTGAAGTGATTAGAGTTAACTGCAAGTTAACATCAATCTCAACATTAGATAATGTGAAGATTAAAGCAATATTTTTGCTCATAAAAGAAAAGTTTCTTCACTATATTTAGAGCAGTTAAAATTGCAACACTTCTTAAAATGTAGGGTTAAACTTGTAACATTTATTTAAATTTGAGGTGTAAGTGAAACTTCTTGAAATTAAAAATTTTGGGTTAAAATTGAAACAACTTGATTAATTTAAGGTATATATACTAGTATTAAAGTACCAAAAGGGTAAAGGTAAAAAAAAATGACCTAAAATCTATATATAAAAATTTAAGGCTCCGTCGGTAACCTTTTCGTTTTTTATTTTTGAAAATTAAGTGCATTTCCTCTCCATTTCTTACATCGATTATCATAGTTGAATTATTTGTCAAATTAAAAAAACAAAAACAAGTTTTAAAAGTCATTTTTTCTAGCTTTCAAAATTTGGTTTGTTTTTTAAACCATTGGTAAAAAGTAGATAACATATGAATAAATTTGAAGGTGGAAGTAATGTCTATAAGCTTAATTTTCAAAAAAAAAAAAAAAAATGTTACTGAGGCCGATTTTTTGTTTTTTGTTTTTAGTTTTTGAAAATTAAGGCTAAAAAATATTCCTTCTACCTCTAAATTTATTGTTTTTTTTATCTACTTTTTATCCATGTTTTAAAAAACTAAGCTAAAATTTGAAAATAAAAAAAAATAGTTTTTAAAAACTTATTTTTATGTTTGAAATTGACTAAGAAAAGATGTAAACCATCGTAAGAAAATATAAAAAAAATAGACTTAATTTTTAAAAATAAAAAAAATGAAAAACAAAATTATTACCAAGGAAGATATTAGTACATTTATGAAATGTGAACTATGGATTAGGCTAATAGGCTAAAAATTTATTGATGTAAATATATGTTCAAAGACGGGTCTAACTAGGCCTATGCATGAATCCGATTGGGCCATGATTGGAGTCAAATGGGCTCTTAATGGGCCTTCCCCAATTTCCCAGCACAGCCCATTCGAATTGACCCGTTTGGGGCTCGCCGAAGAAGGGCCGAGGAGGAGCATTGATCGGCTTTTTGGACAAATTAACAAGTAGGAAATGATCTCACGTCTTCAGTTTCTTCCCTTTCTGTCTTCTACAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGTAATATGATTTCCATCTCTGACACCTTTAGTCGACGAATGGTTTCTGATTCCTATTCGAGAATTTTTTATTCTGCTGTTGCGTTTTCGTAGTGGATGACTGGATATATTTAAATTTAGGGCTTAGCTCTGATTGTGATGAAATTCGATCGGCGATTGTTTGCAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGGTATTTTTTCATCTGCTCCAGTTCTTTCTTTTGGAATGATCATGCTCTACTGTTTAGTTTTATAACACTCGTTAGGGCTCGAGAGTCGAGACTATAAAATGGTAAACCTATGTTTGATGTCTGAATTTTCATATCCCAAATCATGGGCTGCTAATCTATGACCTGTCCATACCAAGTTACATAAAATTAAACTTTTAAAATGATCTCACCTTCTATACTGCCTATTAATTTTCATAAATCCTTTCTGCCGTACTATTCAAACGCAAGAACTTATCAAATTCGCGCTTGTTAAAGCTACGAGTACAACATCCGCTTGGAATACCCAAGTAGTTAACCTTTCTGTTGTTTTGTTCCTTCTTGCAATCTCTCCCAGTAGAATATAGCTTTTAGCATCAATTTCTTTTTCTCTTAGCTGCCCCATATGGCCATATGTTCATCAGCTTTTACATAATCATATGGTTTTTTGCTCAAAATTTGTAATTTCTGTAAATTAAAAACTCAGCCATTCCATGAGAATTGATTGGCTTGACTGTTGTGCTGTTGTTTAACTTTTGACAGTACTTGGTGACATTTTTGGGGGGAGTGGTCTAGAAACATCATTACAGTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGTTTTAGAAATATCTGTTGTCCTGTTCCATATTAGCTGTCATTGCTGGTGGTAGTTTGTGATTAAAAATTTAAAACAAACGAATACTTGTATTTTAGGTCATCTGAAACACAAATGAAGAATCTCCATAGATTGCTGTCTTTAACTTCGAACTATAAATTCACCTCCTTAATGTTATGAATTCAAATCATGCTGTGTACCCACGTACAATATCAAATATCTTATGAAATTTTAATCATTAAATGATGTAGAGAAATTAAATTGTTATGCATAAGTGGAATAGAGCACGCTCTGTGCATCTTGATCAATACCTAAAACTGGAGAAAGTCCTCTGGGTAGGAATTCTTCAAGGAACACATGGATTACCTCTTAGTTCATTGTCAATTTCCATATTCGGGTTTCAATGAGACATTGAGATCAACTTGCATGTATCTCAACGGATCTCACAAGATAATTACTTTATCTTACTACACGAGAAAAAAAAATGAAGGAATACAAGGGTGTACAGAAAAACCAAGCCCACAAAGCCCCCTTTAAAGAGAAAGGGGTCAAATTAAGAAAAATGTTGCCTAAAGAGTAATTACAAAAGAACTTCGAAAGCGAAGTTCAAAGGGAGACAAGAAACTTCACCAAGGACCAAACATCACTAGAGTCCCTCTCCACCCCTTTAAACACTACTATTTCTCTCTCCATAAATCTCATAACAAAGCACACACCCAACATTCTAAAGAAAGCAGTCATTCTCACTAAAAGAGGCGGATGGAGGAGGTACTCTCCGATCAAACTACTGACACTGCTCTTGGATCTCAAGTGGATGTCCACCATGAATTGAACTCATTGTGCTTAACCTTTCAAACGTGCCCTAGTATCCACTAGACCATCTCATGGTAGTTAAGGTTTTGAAGTCGATGAAAACAATTGACTCTCCCTTCGAGGTTCTTTTCCCCACTCTGTCTTACATCTATATATTTATGATGTATTTGGAGTGCATATTTCGTTGCAGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAA

mRNA sequence

ATGCTGCTCGTCGGAGGTTCGCCGTTCGTGGTCTGTGATCGCCGGAGAACGAGACTGAGCAAGGGGGCGGCGGCAACGAGGGGAAAGATGAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAA

Coding sequence (CDS)

ATGCTGCTCGTCGGAGGTTCGCCGTTCGTGGTCTGTGATCGCCGGAGAACGAGACTGAGCAAGGGGGCGGCGGCAACGAGGGGAAAGATGAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAA

Protein sequence

MLLVGGSPFVVCDRRRTRLSKGAAATRGKMKSDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

Homology

[Close]

BLAST of HG10008568.1 vs. NCBI nr
Match: XP_023531696.1 (uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 hypothetical protein SDJN03_16128, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 32  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGR 91
           SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGR
Sbjct: 2   SDPSDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGR 61

Query: 92  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDK 151
           HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKSDK
Sbjct: 62  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK 121

Query: 152 NDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 211
           +DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP
Sbjct: 122 DDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 181

Query: 212 CKLPYNEDS 221
           CKLPYNEDS
Sbjct: 182 CKLPYNEDS 190

[Close]

BLAST of HG10008568.1 vs. NCBI nr
Match: XP_022933741.1 (uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 uncharacterized protein LOC111471509 [Cucurbita maxima])

HSP 1 Score: 375.2 bits (962), Expect = 4.0e-100
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 32  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGR 91
           SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGR
Sbjct: 2   SDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGR 61

Query: 92  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDK 151
           HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKSDK
Sbjct: 62  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK 121

Query: 152 NDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 211
           +DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP
Sbjct: 122 DDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 181

Query: 212 CKLPYNEDS 221
           CKLPYNEDS
Sbjct: 182 CKLPYNEDS 190

[Close]

BLAST of HG10008568.1 vs. NCBI nr
Match: XP_038878253.1 (uncharacterized protein LOC120070538 [Benincasa hispida])

HSP 1 Score: 374.8 bits (961), Expect = 5.2e-100
Identity = 173/180 (96.11%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 42  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 101
           ME TSSSPSPTRSRGGHRHSGSGSGDERPRFFD KAKAICW KADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDTKAKAICWDKADVVPGRHPERWRKDAA 60

Query: 102 GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 161
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS++NDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNRNDVDTSELKG 120

Query: 162 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 221
           YSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDSL
Sbjct: 121 YSCDIKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKAKDRLAPCKLPYNEDSL 180

[Close]

BLAST of HG10008568.1 vs. NCBI nr
Match: XP_008453224.1 (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo] >KAA0057965.1 HNH endonuclease [Cucumis melo var. makuwa])

HSP 1 Score: 370.5 bits (950), Expect = 9.8e-99
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 42  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 101
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 102 GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 161
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 162 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 221
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 180

[Close]

BLAST of HG10008568.1 vs. NCBI nr
Match: XP_008453223.1 (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 5.4e-97
Identity = 174/184 (94.57%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 42  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 101
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 102 GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 161
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 162 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 221
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180

[Close]

BLAST of HG10008568.1 vs. ExPASy TrEMBL
Match: A0A6J1I7G1 (uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 32  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGR 91
           SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGR
Sbjct: 2   SDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGR 61

Query: 92  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDK 151
           HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKSDK
Sbjct: 62  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK 121

Query: 152 NDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 211
           +DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP
Sbjct: 122 DDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 181

Query: 212 CKLPYNEDS 221
           CKLPYNEDS
Sbjct: 182 CKLPYNEDS 190

[Close]

BLAST of HG10008568.1 vs. ExPASy TrEMBL
Match: A0A0A0LUK3 (HNHc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 176/185 (95.14%), Postives = 180/185 (97.30%), Query Frame = 0


Query: 35  LAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPE 94
           L GVPTPME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPE
Sbjct: 23  LDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPE 82

Query: 95  RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDV 154
           RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DV
Sbjct: 83  RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDV 142

Query: 155 DTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKL 214
           DTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKL
Sbjct: 143 DTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKL 202

Query: 215 PYNED 220
           PYNE+
Sbjct: 203 PYNEE 207

[Close]

BLAST of HG10008568.1 vs. ExPASy TrEMBL
Match: A0A6J1EZW3 (uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC111441065 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 32  SDPLAGVPTPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGR 91
           SDP  GV TPME TSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGR
Sbjct: 2   SDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGR 61

Query: 92  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDK 151
           HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKSDK
Sbjct: 62  HPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK 121

Query: 152 NDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 211
           +DVDTS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP
Sbjct: 122 DDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAP 181

Query: 212 CKLPYNEDS 221
           CKLPYNEDS
Sbjct: 182 CKLPYNEDS 190

[Close]

BLAST of HG10008568.1 vs. ExPASy TrEMBL
Match: A0A5A7UWI1 (HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002690 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.7e-99
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 42  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 101
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 102 GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 161
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 162 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 221
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 180

[Close]

BLAST of HG10008568.1 vs. ExPASy TrEMBL
Match: A0A1S3BVP6 (uncharacterized protein LOC103494011 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494011 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.7e-99
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 42  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 101
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 102 GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 161
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 162 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 221
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 180

[Close]

BLAST of HG10008568.1 vs. TAIR 10
Match: AT1G18680.1 (HNH endonuclease domain-containing protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-70
Identity = 120/176 (68.18%), Postives = 141/176 (80.11%), Query Frame = 0


Query: 40  TPMETTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKD 99
           T   T ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD
Sbjct: 10  TNSTTAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKD 69

Query: 100 AAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSEL 159
            AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQILQTRVNRFKS + +VD + L
Sbjct: 70  VAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTL 129

Query: 160 KGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 216
           K YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 130 KSYSCGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of HG10008568.1 vs. TAIR 10
Match: AT3G47490.1 (HNH endonuclease )

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-33
Identity = 78/193 (40.41%), Postives = 101/193 (52.33%), Query Frame = 0


Query: 30  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGS 89
           MK DP         +  P+      SS SP R+ G  R                    GS
Sbjct: 40  MKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGS 99

Query: 90  GSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYD 149
           G GD    PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YD
Sbjct: 100 GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 159

Query: 150 HIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVY 195
           HIVPYSKGG+ST +NCQ+LQ +VNR K +K D+  SEL   S   +   +++D+IE+  Y
Sbjct: 160 HIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAY 219

[Close]

BLAST of HG10008568.1 vs. TAIR 10
Match: AT3G47490.3 (HNH endonuclease )

HSP 1 Score: 128.6 bits (322), Expect = 6.0e-30
Identity = 78/213 (36.62%), Postives = 101/213 (47.42%), Query Frame = 0


Query: 30  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGS 89
           MK DP         +  P+      SS SP R+ G  R                    GS
Sbjct: 1   MKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGS 60

Query: 90  GSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYD 149
           G GD    PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YD
Sbjct: 61  GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 120

Query: 150 HIVPYS--------------------KGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 195
           HIVPYS                    KGG+ST +NCQ+LQ +VNR K +K D+  SEL  
Sbjct: 121 HIVPYSKDMCPLEHAFDEPHKDFLDLKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQ 180

[Close]

BLAST of HG10008568.1 vs. TAIR 10
Match: AT3G47490.2 (HNH endonuclease )

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-16
Identity = 50/127 (39.37%), Postives = 60/127 (47.24%), Query Frame = 0


Query: 30  MKSDPL--------AGVPTPMETTSSSPSPTRSRGGHR------------------HSGS 89
           MK DP         +  P+      SS SP R+ G  R                    GS
Sbjct: 40  MKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGS 99

Query: 90  GSGD--ERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYD 129
           G GD    PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YD
Sbjct: 100 GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 159

The following BLAST results are available for this feature:

BLAST of HG10008568.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531696.1	3.0e-100	93.12	uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 ...	[more]
XP_022933741.1	4.0e-100	93.12	uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 unchar...	[more]
XP_038878253.1	5.2e-100	96.11	uncharacterized protein LOC120070538 [Benincasa hispida]	[more]
XP_008453224.1	9.8e-99	96.67	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_008453223.1	5.4e-97	94.57	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]

BLAST of HG10008568.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008568.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7G1	1.9e-100	93.12	uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509...	[more]
A0A0A0LUK3	1.9e-100	95.14	HNHc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011480 PE=4 S...	[more]
A0A6J1EZW3	1.9e-100	93.12	uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC1114410...	[more]
A0A5A7UWI1	4.7e-99	96.67	HNH endonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002...	[more]
A0A1S3BVP6	4.7e-99	96.67	uncharacterized protein LOC103494011 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10008568.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18680.1	1.6e-70	68.18	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	1.5e-33	40.41	HNH endonuclease	[more]
AT3G47490.3	6.0e-30	36.62	HNH endonuclease	[more]
AT3G47490.2	2.2e-16	39.37	HNH endonuclease	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003615	HNH nuclease	SMART	SM00507	HNH_5	coord: 92..146 e-value: 0.0083 score: 25.3
IPR003615	HNH nuclease	CDD	cd00085	HNHc	coord: 107..146 e-value: 1.34466E-5 score: 39.7624
None	No IPR available	GENE3D	1.10.30.50		coord: 89..169 e-value: 2.1E-8 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	PANTHER	PTHR33427:SF1	F6A14.21 PROTEIN	coord: 48..219
None	No IPR available	PANTHER	PTHR33427	HNH ENDONUCLEASE	coord: 48..219
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 106..140 e-value: 4.9E-5 score: 23.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008568	HG10008568	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008568.1-cds	HG10008568.1-cds-Chr10:24236714..24236806	CDS
HG10008568.1-cds	HG10008568.1-cds-Chr10:24239046..24239337	CDS
HG10008568.1-cds	HG10008568.1-cds-Chr10:24239503..24239625	CDS
HG10008568.1-cds	HG10008568.1-cds-Chr10:24241267..24241424	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008568.1	HG10008568.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding