HG10008105.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008105.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 19819678 .. 19820001 (+)
Sequence length	324
RNA-Seq Expression	HG10008105.1
Synteny	HG10008105.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTCAAGTCACTGAACACATTTACAATGAAGTTCGCACTAGTAATTCTTGTTTGCATAATCATTTTAGCACCATCGACAACAGCCCGCACGGTGGCGGCAACACCGGGTCTATCAGTACAACAAAATCTCTCTTTCTTAAGTTGTGCCCCATTTATTTTGGATGCTGCATTGTGTGTGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTAGATGATTGTGCTCCCGAAATTTTCGAAAAGATTCCTCTTACTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

mRNA sequence

ATGACGGTCAAGTCACTGAACACATTTACAATGAAGTTCGCACTAGTAATTCTTGTTTGCATAATCATTTTAGCACCATCGACAACAGCCCGCACGGTGGCGGCAACACCGGGTCTATCAGTACAACAAAATCTCTCTTTCTTAAGTTGTGCCCCATTTATTTTGGATGCTGCATTGTGTGTGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTAGATGATTGTGCTCCCGAAATTTTCGAAAAGATTCCTCTTACTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Coding sequence (CDS)

ATGACGGTCAAGTCACTGAACACATTTACAATGAAGTTCGCACTAGTAATTCTTGTTTGCATAATCATTTTAGCACCATCGACAACAGCCCGCACGGTGGCGGCAACACCGGGTCTATCAGTACAACAAAATCTCTCTTTCTTAAGTTGTGCCCCATTTATTTTGGATGCTGCATTGTGTGTGGTCGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTAGATGATTGTGCTCCCGAAATTTTCGAAAAGATTCCTCTTACTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Protein sequence

MTVKSLNTFTMKFALVILVCIIILAPSTTARTVAATPGLSVQQNLSFLSCAPFILDAALCVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL

Homology

[Close]

BLAST of HG10008105.1 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MTVKSLNTFTMKFALVILVCIIILAPSTT-ARTVAATPGLSVQQNLSFLSCAPFILDAAL 60
           M  +SLN   MK  LV LVCI ILAPSTT A T AA P  SV QN  FL CAPFIL+A L
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           CV DVIKFPIAPHP CCKAI KL+DCAPEI++KIP  DMD+IKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008105.1 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 4   KSLNTFTMKFALVILVCIIILAPSTTA-RTVAATPGL--SVQQNLSFLSCAPFILDAALC 63
           KSL    MK ALV +V I ILA S TA RTV ++  L  S+ Q+LSF SC PFILDA LC
Sbjct: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60

Query: 64  VVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           +VDV KFPIAPHPFCCKAIFKL+DCAP +F+ IP  DMD++K ICAL
Sbjct: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 107

[Close]

BLAST of HG10008105.1 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-27
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 11  MKFALVILVCIIILAPSTT-ARTVAATPGLSVQQNLSFLSCAPFILDAALCVVDVIKFPI 70
           MK  LV LVCI ILAPSTT A T AA P  SV QN  FL CAPFIL+A LCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           APHP CCKAI KL DCAP+I++KIP +DM++IKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008105.1 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MTVKSLNTFTMKFALVILVCIIILAPSTTA-RTVAATP-GLSVQQNLSFLSCAPFILDAA 60
           M VKSL    +K A V +V I ILA S TA RTV++T    S+ QNLSF SCAPFI D  
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICA 107
           LC+VDV KFPI+PHP CCKAIFKL+DCAP +F+ IP  DMD+IKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008105.1 vs. NCBI nr
Match: KAE8653020.1 (hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypothetical protein Csa_004566, partial [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MTVKSLNTFTMKFALVILVCIIILAPSTTA-RTVAATPGL--SVQQNLSFLSCAPFILDA 60
           M VKSL    MK ALV +V I ILA S TA RTV ++  L  S+ Q+LSF SC PFILDA
Sbjct: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60

Query: 61  ALCVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDI 101
            LC+VDV KFPIAPHPFCCKAIFKL+DCAP +F+ IP  DMD+
Sbjct: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 103

[Close]

BLAST of HG10008105.1 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MTVKSLNTFTMKFALVILVCIIILAPSTT-ARTVAATPGLSVQQNLSFLSCAPFILDAAL 60
           M  +SLN   MK  LV LVCI ILAPSTT A T AA P  SV QN  FL CAPFIL+A L
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           CV DVIKFPIAPHP CCKAI KL+DCAPEI++KIP  DMD+IKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008105.1 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 11  MKFALVILVCIIILAPSTT-ARTVAATPGLSVQQNLSFLSCAPFILDAALCVVDVIKFPI 70
           MK  LV LVCI ILAPSTT A T AA P  SV QN  FL CAPFIL+A LCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           APHP CCKAI KL DCAP+I++KIP +DM++IKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008105.1 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.5e-26
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 1   MTVKSLNTFTMKFALVILVCIIILAPSTTA-RTVAATP-GLSVQQNLSFLSCAPFILDAA 60
           M VKSL    +K A V +V I ILA S TA RTV++T    S+ QNLSF SCAPFI D  
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCVVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICA 107
           LC+VDV KFPI+PHP CCKAIFKL+DCAP +F+ IP  DMD+IKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008105.1 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 4   KSLNTFTMKFALVILVCIIILAPSTTARTVAATPGLSVQQNLSFLSCAPFILDAALCVVD 63
           + ++TF MK +L  LV + ILAPS TA TVAA P     ++LSF +C PFILDA +CVV 
Sbjct: 5   RGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCVVS 64

Query: 64  VIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           VIKFP+APHP CCKAI  L+DC+PE+++ IP   MD+IKKIC+L
Sbjct: 65  VIKFPVAPHPSCCKAISDLNDCSPEVYQHIP--GMDVIKKICSL 106

[Close]

BLAST of HG10008105.1 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 4   KSLNTFTMKFALVILVCIIILAPSTTARTVAATPG---LSVQQNLSFLSCAPFILDAALC 63
           KS +  T++ ALV LVCI+ILAPS TA T+A  P    + + Q+ SF +CAPFIL+A +C
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVDVIKFPIAPHPFCCKAIFKLDDCAPEIFEKIPLTDMDIIKKICAL 108
           +VDVIK P+APHP CCKAI  L+DCAPEI++ IP   MD+IKKIC L
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

The following BLAST results are available for this feature:

BLAST of HG10008105.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050069.1	4.2e-31	70.37	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
KAE8653023.1	3.7e-27	65.42	hypothetical protein Csa_023561, partial [Cucumis sativus]	[more]
TYK10334.1	4.8e-27	69.39	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]
KAA0050072.1	1.6e-25	63.89	hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033...	[more]
KAE8653020.1	1.3e-24	65.05	hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypotheti...	[more]

BLAST of HG10008105.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008105.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9A1	2.0e-31	70.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGK9	2.3e-27	69.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2L3	7.5e-26	63.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U475	1.9e-24	58.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CGL7	2.4e-24	58.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10008105.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008105	HG10008105	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008105.1-cds	HG10008105.1-cds-Chr10:19819678..19820001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008105.1	HG10008105.1-protein	polypeptide